Wall clock time and date at job start Mon Mar 30 2020 05:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35263 * 116.99991 * 2 1 4 4 S 1.75191 * 124.58340 * 3.98255 * 3 2 1 5 5 C 1.75881 * 92.74727 * 180.17835 * 4 3 2 6 6 C 1.39878 * 129.67966 * 179.83210 * 5 4 3 7 7 C 1.37679 * 120.60309 * 179.97438 * 6 5 4 8 8 C 1.38549 * 120.17190 * 0.02562 * 7 6 5 9 9 C 1.37936 * 120.16997 * 359.97438 * 8 7 6 10 10 O 1.35833 * 119.83342 * 180.02562 * 9 8 7 11 11 C 1.39198 * 110.63372 * 359.82969 * 5 4 3 12 12 C 1.37481 * 124.58449 * 183.84515 * 3 2 1 13 13 C 1.40689 * 123.23362 * 0.03641 * 12 3 2 14 14 H 1.07994 * 119.99793 * 140.34292 * 13 12 3 15 15 C 1.39513 * 119.99822 * 320.06177 * 13 12 3 16 16 N 1.31275 * 119.99486 * 159.18182 * 15 13 12 17 17 Si 1.86803 * 120.00276 * 339.18157 * 15 13 12 18 18 H 1.48495 * 109.47237 * 94.79236 * 17 15 13 19 19 H 1.48501 * 109.46849 * 214.79278 * 17 15 13 20 20 H 1.48504 * 109.46876 * 334.79259 * 17 15 13 21 21 H 1.08993 * 109.47367 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47008 * 300.00280 * 1 2 3 23 23 H 1.09000 * 109.46864 * 59.99871 * 1 2 3 24 24 H 1.08001 * 119.70098 * 359.97438 * 6 5 4 25 25 H 1.07995 * 119.91728 * 180.02562 * 7 6 5 26 26 H 1.07999 * 119.91654 * 179.97438 * 8 7 6 27 27 H 0.96701 * 114.00324 * 269.97793 * 10 9 8 28 28 H 0.97002 * 119.99474 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0431 1.2052 0.0000 4 16 1.2125 2.7444 0.1002 5 6 2.7152 3.6558 0.0303 6 6 2.9229 5.0388 0.0553 7 6 4.1965 5.5576 -0.0104 8 6 5.2894 4.7110 -0.1029 9 6 5.1070 3.3440 -0.1291 10 8 6.1833 2.5203 -0.2194 11 6 3.8063 2.7964 -0.0624 12 6 3.4036 1.3878 -0.0759 13 6 4.3206 0.3245 -0.1640 14 1 5.1812 0.4058 -0.8113 15 6 4.1212 -0.8328 0.5893 16 7 4.7003 -1.9557 0.2329 17 14 3.0305 -0.7843 2.1050 18 1 1.6547 -1.2063 1.7386 19 1 3.5732 -1.7060 3.1351 20 1 2.9964 0.5982 2.6463 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 2.0765 5.7059 0.1269 25 1 4.3442 6.6272 0.0102 26 1 6.2866 5.1224 -0.1546 27 1 6.4394 2.3058 -1.1268 28 1 4.5613 -2.7604 0.7565 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396382783.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:47 Heat of formation + Delta-G solvation = -31.239164 kcal Electronic energy + Delta-G solvation = -16097.279769 eV Core-core repulsion = 13398.583148 eV Total energy + Delta-G solvation = -2698.696621 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.18610 -37.67272 -35.98832 -34.33578 -32.41062 -29.38057 -28.38263 -26.56963 -25.08657 -22.50161 -21.60644 -19.63195 -18.28515 -17.20601 -16.65611 -15.54202 -15.39499 -15.18594 -14.70030 -14.30228 -13.95179 -13.39751 -13.12126 -12.61633 -12.39276 -11.94932 -11.56461 -11.39534 -11.15884 -10.97759 -10.80172 -10.35831 -10.04112 -9.68045 -9.54729 -9.37148 -8.85128 -8.42980 -7.34170 -6.74185 -6.65793 -4.19454 1.57078 1.71574 2.37551 2.91901 3.13489 3.33277 3.45849 3.56775 4.21178 4.27500 4.53656 4.91181 5.15967 5.34433 5.57143 5.64692 5.73050 5.77365 5.97671 6.03239 6.23419 6.44924 6.71231 6.85657 6.93775 7.25570 7.45316 7.50378 8.24278 8.37436 8.43276 8.69073 9.01185 10.33791 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022171 B = 0.012153 C = 0.008658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.618473 B = 2303.404518 C = 3233.168293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.264 6.264 3 C -0.167 4.167 4 S -0.014 6.014 5 C -0.116 4.116 6 C -0.104 4.104 7 C -0.110 4.110 8 C -0.165 4.165 9 C 0.150 3.850 10 O -0.482 6.482 11 C -0.064 4.064 12 C 0.050 3.950 13 C -0.412 4.412 14 H 0.092 0.908 15 C 0.099 3.901 16 N -0.820 5.820 17 Si 0.913 3.087 18 H -0.250 1.250 19 H -0.299 1.299 20 H -0.264 1.264 21 H 0.087 0.913 22 H 0.039 0.961 23 H 0.044 0.956 24 H 0.116 0.884 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.385 0.615 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.725 8.744 -0.693 9.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.179 6.179 3 C -0.325 4.325 4 S 0.245 5.755 5 C -0.232 4.232 6 C -0.128 4.128 7 C -0.130 4.130 8 C -0.187 4.187 9 C 0.103 3.897 10 O -0.292 6.292 11 C -0.073 4.073 12 C 0.041 3.959 13 C -0.444 4.444 14 H 0.110 0.890 15 C -0.118 4.118 16 N -0.447 5.447 17 Si 0.741 3.259 18 H -0.175 1.175 19 H -0.227 1.227 20 H -0.188 1.188 21 H 0.105 0.895 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.134 0.866 25 H 0.140 0.860 26 H 0.142 0.858 27 H 0.241 0.759 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.097 8.604 0.027 10.000 hybrid contribution 0.689 -0.410 0.158 0.818 sum -4.408 8.193 0.185 9.306 Atomic orbital electron populations 1.22792 0.81547 1.02397 1.00082 1.85937 1.17729 1.23001 1.91261 1.22384 0.92852 0.85207 1.32012 1.83084 1.08327 1.00045 1.84043 1.22066 0.96303 0.96515 1.08286 1.20355 0.97163 0.91818 1.03450 1.20604 0.91635 0.98864 1.01923 1.21045 0.99197 0.92228 1.06250 1.18309 0.84890 0.88083 0.98393 1.84807 1.45248 1.67320 1.31780 1.19744 0.92088 0.93865 1.01634 1.16966 0.89300 0.90221 0.99436 1.18474 1.07740 0.95711 1.22432 0.89000 1.25835 0.93697 0.93721 0.98527 1.69900 1.38501 0.99917 1.36378 0.86202 0.81106 0.78941 0.79663 1.17508 1.22695 1.18800 0.89455 0.94278 0.93720 0.86566 0.85966 0.85811 0.75883 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.93 101.05 1.00 1.55 15 2 O -0.26 -6.42 6.08 -17.48 -0.11 -6.52 15 3 C -0.17 -4.15 5.70 30.46 0.17 -3.97 15 4 S -0.01 -0.29 21.84 -107.50 -2.35 -2.64 15 5 C -0.12 -2.45 6.41 -38.61 -0.25 -2.69 15 6 C -0.10 -1.79 10.06 -39.17 -0.39 -2.19 15 7 C -0.11 -1.69 10.03 -39.67 -0.40 -2.09 15 8 C -0.17 -2.78 9.95 -39.58 -0.39 -3.17 15 9 C 0.15 3.07 6.75 -38.53 -0.26 2.81 15 10 O -0.48 -9.67 11.67 -19.22 -0.22 -9.89 15 11 C -0.06 -1.48 6.01 -105.05 -0.63 -2.12 15 12 C 0.05 1.31 4.85 -105.92 -0.51 0.80 15 13 C -0.41 -11.48 8.66 -38.18 -0.33 -11.81 15 14 H 0.09 2.59 7.10 -52.49 -0.37 2.22 15 15 C 0.10 2.77 5.12 -17.31 -0.09 2.68 15 16 N -0.82 -23.13 13.95 55.53 0.77 -22.35 15 17 Si 0.91 23.07 24.66 -169.99 -4.19 18.88 15 18 H -0.25 -6.04 5.77 56.52 0.33 -5.72 15 19 H -0.30 -7.30 7.11 56.52 0.40 -6.90 15 20 H -0.26 -6.98 7.11 56.52 0.40 -6.57 15 21 H 0.09 1.41 8.14 -51.93 -0.42 0.99 15 22 H 0.04 0.69 7.94 -51.93 -0.41 0.28 15 23 H 0.04 0.76 8.09 -51.93 -0.42 0.34 15 24 H 0.12 1.68 8.06 -52.49 -0.42 1.26 15 25 H 0.12 1.43 8.06 -52.49 -0.42 1.01 15 26 H 0.12 1.73 8.06 -52.49 -0.42 1.31 15 27 H 0.39 6.08 8.93 45.56 0.41 6.49 15 28 H 0.28 7.26 8.31 -40.82 -0.34 6.92 15 LS Contribution 254.35 15.07 3.83 3.83 Total: -1.00 -31.23 254.35 -6.04 -37.27 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -1.70 Total: 1.62 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -2.08 Total: -20.20 kcal Atomic # 7 Polarization: -23.13 SS G_CDS: 0.77 Total: -22.35 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.33 Total: -16.41 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.19 Total: 18.88 kcal Atomic # 16 Polarization: -0.29 SS G_CDS: -2.35 Total: -2.64 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.23 -6.04 -37.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396382783.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.031 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds