Wall clock time and date at job start Mon Mar 30 2020 05:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35263 * 116.99991 * 2 1 4 4 S 1.75191 * 124.58340 * 3.98255 * 3 2 1 5 5 C 1.75881 * 92.74727 * 180.17835 * 4 3 2 6 6 C 1.39878 * 129.67966 * 179.83210 * 5 4 3 7 7 C 1.37679 * 120.60309 * 179.97438 * 6 5 4 8 8 C 1.38549 * 120.17190 * 0.02562 * 7 6 5 9 9 C 1.37936 * 120.16997 * 359.97438 * 8 7 6 10 10 O 1.35833 * 119.83342 * 180.02562 * 9 8 7 11 11 C 1.39198 * 110.63372 * 359.82969 * 5 4 3 12 12 C 1.37481 * 124.58449 * 183.84515 * 3 2 1 13 13 C 1.40689 * 123.23362 * 0.03641 * 12 3 2 14 14 H 1.07994 * 119.99793 * 140.34292 * 13 12 3 15 15 C 1.39513 * 119.99822 * 320.06177 * 13 12 3 16 16 N 1.31275 * 119.99486 * 159.18182 * 15 13 12 17 17 Si 1.86803 * 120.00276 * 339.18157 * 15 13 12 18 18 H 1.48495 * 109.47237 * 94.79236 * 17 15 13 19 19 H 1.48501 * 109.46849 * 214.79278 * 17 15 13 20 20 H 1.48504 * 109.46876 * 334.79259 * 17 15 13 21 21 H 1.08993 * 109.47367 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47008 * 300.00280 * 1 2 3 23 23 H 1.09000 * 109.46864 * 59.99871 * 1 2 3 24 24 H 1.08001 * 119.70098 * 359.97438 * 6 5 4 25 25 H 1.07995 * 119.91728 * 180.02562 * 7 6 5 26 26 H 1.07999 * 119.91654 * 179.97438 * 8 7 6 27 27 H 0.96701 * 114.00324 * 269.97793 * 10 9 8 28 28 H 0.97002 * 119.99474 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0431 1.2052 0.0000 4 16 1.2125 2.7444 0.1002 5 6 2.7152 3.6558 0.0303 6 6 2.9229 5.0388 0.0553 7 6 4.1965 5.5576 -0.0104 8 6 5.2894 4.7110 -0.1029 9 6 5.1070 3.3440 -0.1291 10 8 6.1833 2.5203 -0.2194 11 6 3.8063 2.7964 -0.0624 12 6 3.4036 1.3878 -0.0759 13 6 4.3206 0.3245 -0.1640 14 1 5.1812 0.4058 -0.8113 15 6 4.1212 -0.8328 0.5893 16 7 4.7003 -1.9557 0.2329 17 14 3.0305 -0.7843 2.1050 18 1 1.6547 -1.2063 1.7386 19 1 3.5732 -1.7060 3.1351 20 1 2.9964 0.5982 2.6463 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 2.0765 5.7059 0.1269 25 1 4.3442 6.6272 0.0102 26 1 6.2866 5.1224 -0.1546 27 1 6.4394 2.3058 -1.1268 28 1 4.5613 -2.7604 0.7565 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396382783.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:47 Heat of formation + Delta-G solvation = -53.750944 kcal Electronic energy + Delta-G solvation = -16098.255953 eV Core-core repulsion = 13398.583148 eV Total energy + Delta-G solvation = -2699.672805 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.70707 -39.44489 -37.49578 -36.10563 -34.26751 -30.89368 -29.95907 -28.24269 -26.85052 -24.05652 -23.13343 -21.40794 -19.89229 -19.09920 -18.26430 -17.15479 -17.01433 -16.78899 -16.35953 -16.03600 -15.47354 -15.00348 -14.96108 -14.28489 -14.00538 -13.51418 -13.21818 -12.98939 -12.81807 -12.69698 -12.46747 -12.08045 -11.95026 -11.36170 -11.16812 -11.03436 -10.82121 -10.01926 -8.93972 -8.72073 -8.43683 -6.21719 0.02166 0.28424 0.73692 1.13319 1.20483 1.33748 1.43760 1.69321 2.27672 2.67697 2.83721 3.16267 3.49560 4.10166 4.20227 4.29298 4.30545 4.35190 4.57291 4.59176 4.83969 5.04097 5.16300 5.44462 5.48640 5.57037 5.62243 5.93255 6.34285 6.44583 6.77140 6.96258 7.01475 8.36335 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022171 B = 0.012153 C = 0.008658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.618473 B = 2303.404518 C = 3233.168293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.296 6.296 3 C -0.164 4.164 4 S 0.030 5.970 5 C -0.137 4.137 6 C -0.102 4.102 7 C -0.087 4.087 8 C -0.151 4.151 9 C 0.124 3.876 10 O -0.500 6.500 11 C -0.109 4.109 12 C 0.018 3.982 13 C -0.441 4.441 14 H 0.067 0.933 15 C 0.063 3.937 16 N -0.865 5.865 17 Si 0.954 3.046 18 H -0.234 1.234 19 H -0.290 1.290 20 H -0.284 1.284 21 H 0.112 0.888 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.152 0.848 25 H 0.176 0.824 26 H 0.157 0.843 27 H 0.397 0.603 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.164 12.152 -0.315 13.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.212 6.212 3 C -0.321 4.321 4 S 0.288 5.712 5 C -0.252 4.252 6 C -0.125 4.125 7 C -0.107 4.107 8 C -0.172 4.172 9 C 0.078 3.922 10 O -0.311 6.311 11 C -0.118 4.118 12 C 0.008 3.992 13 C -0.474 4.474 14 H 0.085 0.915 15 C -0.149 4.149 16 N -0.495 5.495 17 Si 0.781 3.219 18 H -0.159 1.159 19 H -0.218 1.218 20 H -0.210 1.210 21 H 0.130 0.870 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.169 0.831 25 H 0.193 0.807 26 H 0.175 0.825 27 H 0.254 0.746 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.549 12.016 0.396 13.691 hybrid contribution 1.060 -1.158 -0.048 1.571 sum -5.489 10.857 0.348 12.171 Atomic orbital electron populations 1.23162 0.78724 1.04605 1.01372 1.85886 1.20774 1.23473 1.91053 1.22911 0.93714 0.87139 1.28352 1.82717 1.07557 0.96915 1.83963 1.22455 0.95444 0.98146 1.09143 1.20855 0.99387 0.90326 1.01955 1.21240 0.90106 1.01235 0.98159 1.21474 1.01578 0.90496 1.03606 1.18699 0.84062 0.89670 0.99783 1.84759 1.45254 1.67990 1.33139 1.19880 0.94278 0.92885 1.04719 1.17313 0.89903 0.91631 1.00305 1.18454 1.08139 0.97153 1.23693 0.91545 1.26345 0.94824 0.93587 1.00101 1.69938 1.41271 1.00448 1.37888 0.85603 0.80981 0.77616 0.77706 1.15894 1.21819 1.21004 0.86998 0.93101 0.92129 0.83058 0.80668 0.82528 0.74572 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.93 113.37 1.13 1.74 15 2 O -0.30 -14.31 6.08 -85.47 -0.52 -14.83 15 3 C -0.16 -8.12 5.70 67.64 0.39 -7.73 15 4 S 0.03 1.19 21.84 -56.49 -1.23 -0.04 15 5 C -0.14 -5.45 6.41 22.90 0.15 -5.30 15 6 C -0.10 -3.02 10.06 22.53 0.23 -2.79 15 7 C -0.09 -2.18 10.03 22.21 0.22 -1.96 15 8 C -0.15 -4.48 9.95 22.27 0.22 -4.26 15 9 C 0.12 5.01 6.75 22.95 0.16 5.16 15 10 O -0.50 -20.64 11.67 -91.68 -1.07 -21.71 15 11 C -0.11 -5.05 6.01 -20.14 -0.12 -5.18 15 12 C 0.02 0.99 4.85 -20.70 -0.10 0.89 15 13 C -0.44 -26.00 8.66 23.18 0.20 -25.80 15 14 H 0.07 4.07 7.10 -2.91 -0.02 4.05 15 15 C 0.06 3.69 5.12 85.08 0.44 4.12 15 16 N -0.87 -51.41 13.95 21.77 0.30 -51.11 15 17 Si 0.95 48.72 24.66 68.60 1.69 50.41 15 18 H -0.23 -11.16 5.77 99.48 0.57 -10.58 15 19 H -0.29 -14.12 7.11 99.48 0.71 -13.41 15 20 H -0.28 -15.26 7.11 99.48 0.71 -14.56 15 21 H 0.11 3.36 8.14 -2.39 -0.02 3.34 15 22 H 0.05 1.67 7.94 -2.39 -0.02 1.65 15 23 H 0.06 1.94 8.09 -2.39 -0.02 1.92 15 24 H 0.15 3.42 8.06 -2.91 -0.02 3.40 15 25 H 0.18 2.66 8.06 -2.91 -0.02 2.63 15 26 H 0.16 3.62 8.06 -2.91 -0.02 3.60 15 27 H 0.40 13.30 8.93 -74.06 -0.66 12.64 15 28 H 0.28 15.45 8.31 -92.71 -0.77 14.68 15 Total: -1.00 -71.51 254.35 2.48 -69.04 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.41 Total: 9.36 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 2.90 Total: -41.10 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.30 Total: -51.11 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.59 Total: -36.54 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 1.69 Total: 50.41 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -1.23 Total: -0.04 kcal Total: -71.51 2.48 -69.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396382783.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.284 kcal (2) G-P(sol) polarization free energy of solvation -71.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds