Wall clock time and date at job start Mon Mar 30 2020 05:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35835 * 116.99613 * 2 1 4 4 C 1.35752 * 119.88845 * 0.28546 * 3 2 1 5 5 C 1.41913 * 120.81271 * 180.28307 * 4 3 2 6 6 C 1.40258 * 128.49715 * 179.69416 * 5 4 3 7 7 C 1.33411 * 115.74364 * 179.97438 * 6 5 4 8 8 O 1.35520 * 124.61129 * 179.97438 * 7 6 5 9 9 S 1.75459 * 110.77422 * 0.02562 * 7 6 5 10 10 C 1.40569 * 119.07865 * 359.68664 * 5 4 3 11 11 C 1.38566 * 120.24288 * 0.02586 * 10 5 4 12 12 C 1.40457 * 120.09065 * 359.97438 * 11 10 5 13 13 C 1.40814 * 120.22592 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99639 * 205.56855 * 13 12 11 15 15 C 1.39788 * 120.00412 * 25.56552 * 13 12 11 16 16 N 1.30981 * 119.99910 * 17.32043 * 15 13 12 17 17 Si 1.86801 * 120.00198 * 197.33085 * 15 13 12 18 18 H 1.48503 * 109.46816 * 265.19264 * 17 15 13 19 19 H 1.48496 * 109.47089 * 25.19087 * 17 15 13 20 20 H 1.48502 * 109.47548 * 145.19267 * 17 15 13 21 21 H 1.09005 * 109.46900 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47337 * 299.99774 * 1 2 3 23 23 H 1.08998 * 109.47227 * 60.00488 * 1 2 3 24 24 H 1.07995 * 119.59214 * 359.94967 * 4 3 2 25 25 H 1.07998 * 122.12580 * 0.02562 * 6 5 4 26 26 H 0.96700 * 113.99262 * 90.00483 * 8 7 6 27 27 H 1.08002 * 119.95160 * 179.97438 * 11 10 5 28 28 H 0.97002 * 119.99649 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 1.3040 2.3474 0.0059 5 6 1.9276 3.6221 0.0000 6 6 1.3253 4.8887 -0.0013 7 6 2.1617 5.9281 -0.0068 8 8 1.7753 7.2271 -0.0094 9 16 3.8299 5.3844 -0.0118 10 6 3.3314 3.6958 -0.0054 11 6 4.0911 2.5370 -0.0054 12 6 3.4610 1.2818 0.0004 13 6 4.2303 0.1024 -0.0001 14 1 3.8168 -0.8118 -0.3997 15 6 5.5291 0.1148 0.5165 16 7 5.9148 1.0946 1.2954 17 14 6.7149 -1.2659 0.0956 18 1 6.6752 -2.2956 1.1649 19 1 6.3208 -1.8799 -1.1977 20 1 8.0915 -0.7198 -0.0148 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 0.2261 2.2810 0.0097 25 1 0.2527 5.0146 0.0028 26 1 1.6660 7.6065 0.8733 27 1 5.1694 2.5992 -0.0100 28 1 6.8160 1.1030 1.6542 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396382846.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:58 Heat of formation + Delta-G solvation = -43.643648 kcal Electronic energy + Delta-G solvation = -15544.451521 eV Core-core repulsion = 12845.217001 eV Total energy + Delta-G solvation = -2699.234520 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.10924 -37.70370 -36.45315 -34.58388 -32.14563 -29.16202 -28.65469 -26.71706 -24.75337 -22.27251 -21.28365 -19.88368 -17.91935 -17.64230 -16.64770 -15.65725 -15.36455 -15.06821 -14.82644 -14.16956 -14.08887 -13.14512 -12.71785 -12.56921 -12.36292 -12.24515 -11.60218 -11.33354 -11.07123 -11.03846 -10.80054 -10.65636 -9.98984 -9.89996 -9.54584 -9.44849 -8.96104 -8.46090 -7.23253 -7.00577 -6.64951 -4.44509 1.64951 2.43721 2.71643 2.86138 2.97719 3.02016 3.03601 3.36191 3.77043 4.26167 4.39559 4.89226 5.30910 5.62418 5.69643 5.81011 5.93577 6.10184 6.25247 6.61045 6.75397 6.83558 6.98642 7.07792 7.36226 7.43194 7.60818 7.82673 7.98054 8.11772 8.38215 8.52676 8.75035 9.89866 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022233 B = 0.008183 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.114932 B = 3420.866723 C = 4592.683762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.311 6.311 3 C 0.050 3.950 4 C -0.150 4.150 5 C -0.180 4.180 6 C -0.093 4.093 7 C -0.058 4.058 8 O -0.459 6.459 9 S -0.005 6.005 10 C -0.075 4.075 11 C -0.152 4.152 12 C 0.119 3.881 13 C -0.413 4.413 14 H 0.093 0.907 15 C 0.068 3.932 16 N -0.771 5.771 17 Si 0.917 3.083 18 H -0.267 1.267 19 H -0.257 1.257 20 H -0.272 1.272 21 H 0.085 0.915 22 H 0.043 0.957 23 H 0.043 0.957 24 H 0.104 0.896 25 H 0.123 0.877 26 H 0.370 0.630 27 H 0.130 0.870 28 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 1.043 0.025 4.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.225 6.225 3 C 0.005 3.995 4 C -0.172 4.172 5 C -0.185 4.185 6 C -0.125 4.125 7 C -0.216 4.216 8 O -0.266 6.266 9 S 0.253 5.747 10 C -0.190 4.190 11 C -0.178 4.178 12 C 0.112 3.888 13 C -0.441 4.441 14 H 0.111 0.889 15 C -0.153 4.153 16 N -0.394 5.394 17 Si 0.740 3.260 18 H -0.192 1.192 19 H -0.180 1.180 20 H -0.197 1.197 21 H 0.104 0.896 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.122 0.878 25 H 0.140 0.860 26 H 0.223 0.777 27 H 0.148 0.852 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.618 1.718 -0.452 3.164 hybrid contribution -1.148 -0.830 0.548 1.519 sum -3.765 0.888 0.096 3.870 Atomic orbital electron populations 1.22811 0.81185 1.02199 1.00287 1.86046 1.18757 1.27788 1.89942 1.18706 0.92496 0.82929 1.05321 1.20162 0.97521 0.90951 1.08526 1.17064 0.91629 0.92043 1.17782 1.20124 0.99207 0.91460 1.01741 1.21637 0.93924 0.85979 1.20102 1.84804 1.87815 1.21561 1.32421 1.83791 1.07780 1.00618 1.82492 1.22085 0.95839 0.94815 1.06274 1.20268 0.99035 0.87948 1.10560 1.16936 0.87209 0.93501 0.91135 1.19597 0.96613 0.96704 1.31226 0.88943 1.26072 0.99008 0.97477 0.92747 1.69888 1.19550 1.29968 1.20022 0.86139 0.78911 0.80535 0.80419 1.19227 1.18017 1.19726 0.89606 0.93805 0.93839 0.87770 0.85954 0.77671 0.85214 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.80 101.05 0.99 1.48 15 2 O -0.31 -6.72 9.77 -19.22 -0.19 -6.90 15 3 C 0.05 1.19 6.66 -39.14 -0.26 0.93 15 4 C -0.15 -3.34 9.02 -39.07 -0.35 -3.69 15 5 C -0.18 -4.16 5.88 -106.85 -0.63 -4.79 15 6 C -0.09 -1.92 10.15 -40.51 -0.41 -2.33 15 7 C -0.06 -1.18 7.53 29.04 0.22 -0.96 15 8 O -0.46 -7.91 13.64 -18.25 -0.25 -8.16 15 9 S -0.01 -0.11 23.29 -107.50 -2.50 -2.62 15 10 C -0.07 -1.82 6.45 -38.58 -0.25 -2.07 15 11 C -0.15 -3.90 8.69 -38.63 -0.34 -4.23 15 12 C 0.12 3.07 5.57 -106.76 -0.59 2.47 15 13 C -0.41 -10.39 8.68 -38.03 -0.33 -10.72 15 14 H 0.09 2.26 7.64 -52.49 -0.40 1.86 15 15 C 0.07 1.59 5.13 -17.33 -0.09 1.51 15 16 N -0.77 -18.84 10.99 55.54 0.61 -18.23 15 17 Si 0.92 17.54 29.59 -169.99 -5.03 12.51 15 18 H -0.27 -5.04 7.11 56.52 0.40 -4.64 15 19 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 20 H -0.27 -5.10 7.11 56.52 0.40 -4.70 15 21 H 0.09 1.09 8.14 -51.93 -0.42 0.67 15 22 H 0.04 0.65 7.62 -51.93 -0.40 0.25 15 23 H 0.04 0.63 7.65 -51.93 -0.40 0.24 15 24 H 0.10 1.99 6.14 -52.49 -0.32 1.67 15 25 H 0.12 2.21 8.06 -52.49 -0.42 1.78 15 26 H 0.37 4.47 9.06 45.56 0.41 4.88 15 27 H 0.13 3.42 6.19 -52.49 -0.32 3.09 15 28 H 0.29 6.32 8.30 -40.82 -0.34 5.99 15 LS Contribution 260.94 15.07 3.93 3.93 Total: -1.00 -28.39 260.94 -6.88 -35.27 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -1.41 Total: 6.61 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: -2.04 Total: -22.41 kcal Atomic # 7 Polarization: -18.84 SS G_CDS: 0.61 Total: -18.23 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.44 Total: -15.06 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -2.50 Total: -2.62 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.39 -6.88 -35.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396382846.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.375 kcal (2) G-P(sol) polarization free energy of solvation -28.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds