Wall clock time and date at job start Mon Mar 30 2020 05:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35835 * 116.99613 * 2 1 4 4 C 1.35752 * 119.88845 * 0.28546 * 3 2 1 5 5 C 1.41913 * 120.81271 * 180.28307 * 4 3 2 6 6 C 1.40258 * 128.49715 * 179.69416 * 5 4 3 7 7 C 1.33411 * 115.74364 * 179.97438 * 6 5 4 8 8 O 1.35520 * 124.61129 * 179.97438 * 7 6 5 9 9 S 1.75459 * 110.77422 * 0.02562 * 7 6 5 10 10 C 1.40569 * 119.07865 * 359.68664 * 5 4 3 11 11 C 1.38566 * 120.24288 * 0.02586 * 10 5 4 12 12 C 1.40457 * 120.09065 * 359.97438 * 11 10 5 13 13 C 1.40814 * 120.22592 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99639 * 205.56855 * 13 12 11 15 15 C 1.39788 * 120.00412 * 25.56552 * 13 12 11 16 16 N 1.30981 * 119.99910 * 17.32043 * 15 13 12 17 17 Si 1.86801 * 120.00198 * 197.33085 * 15 13 12 18 18 H 1.48503 * 109.46816 * 265.19264 * 17 15 13 19 19 H 1.48496 * 109.47089 * 25.19087 * 17 15 13 20 20 H 1.48502 * 109.47548 * 145.19267 * 17 15 13 21 21 H 1.09005 * 109.46900 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47337 * 299.99774 * 1 2 3 23 23 H 1.08998 * 109.47227 * 60.00488 * 1 2 3 24 24 H 1.07995 * 119.59214 * 359.94967 * 4 3 2 25 25 H 1.07998 * 122.12580 * 0.02562 * 6 5 4 26 26 H 0.96700 * 113.99262 * 90.00483 * 8 7 6 27 27 H 1.08002 * 119.95160 * 179.97438 * 11 10 5 28 28 H 0.97002 * 119.99649 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 1.3040 2.3474 0.0059 5 6 1.9276 3.6221 0.0000 6 6 1.3253 4.8887 -0.0013 7 6 2.1617 5.9281 -0.0068 8 8 1.7753 7.2271 -0.0094 9 16 3.8299 5.3844 -0.0118 10 6 3.3314 3.6958 -0.0054 11 6 4.0911 2.5370 -0.0054 12 6 3.4610 1.2818 0.0004 13 6 4.2303 0.1024 -0.0001 14 1 3.8168 -0.8118 -0.3997 15 6 5.5291 0.1148 0.5165 16 7 5.9148 1.0946 1.2954 17 14 6.7149 -1.2659 0.0956 18 1 6.6752 -2.2956 1.1649 19 1 6.3208 -1.8799 -1.1977 20 1 8.0915 -0.7198 -0.0148 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 0.2261 2.2810 0.0097 25 1 0.2527 5.0146 0.0028 26 1 1.6660 7.6065 0.8733 27 1 5.1694 2.5992 -0.0100 28 1 6.8160 1.1030 1.6542 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396382846.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:58 Heat of formation + Delta-G solvation = -62.259299 kcal Electronic energy + Delta-G solvation = -15545.258756 eV Core-core repulsion = 12845.217001 eV Total energy + Delta-G solvation = -2700.041755 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.79213 -39.24689 -38.05986 -36.30591 -33.85148 -30.91274 -30.35630 -28.14086 -26.46737 -23.98048 -23.01796 -21.52966 -19.61658 -19.28144 -18.30106 -17.29578 -17.01846 -16.68720 -16.31136 -15.78670 -15.59569 -14.79464 -14.40877 -14.21878 -14.02504 -13.84348 -13.23506 -12.86722 -12.76660 -12.57508 -12.32072 -12.14983 -11.68285 -11.58687 -11.23013 -11.07003 -10.66205 -10.19597 -9.00783 -8.73974 -8.37004 -6.29675 -0.02142 0.73566 0.89688 1.27985 1.30439 1.40031 1.54804 1.70238 2.18187 2.63301 2.77532 3.43205 3.48961 4.15088 4.42448 4.49817 4.52800 4.64888 4.77662 4.88668 5.04803 5.08424 5.23371 5.31977 5.61583 5.66611 5.84003 6.03013 6.30280 6.60122 6.68707 6.72922 7.04062 8.19881 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022233 B = 0.008183 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.114932 B = 3420.866723 C = 4592.683762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.333 6.333 3 C 0.041 3.959 4 C -0.153 4.153 5 C -0.182 4.182 6 C -0.107 4.107 7 C -0.032 4.032 8 O -0.456 6.456 9 S -0.002 6.002 10 C -0.107 4.107 11 C -0.172 4.172 12 C 0.086 3.914 13 C -0.449 4.449 14 H 0.087 0.913 15 C 0.031 3.969 16 N -0.808 5.808 17 Si 0.988 3.012 18 H -0.259 1.259 19 H -0.256 1.256 20 H -0.265 1.265 21 H 0.117 0.883 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.138 0.862 25 H 0.156 0.844 26 H 0.401 0.599 27 H 0.110 0.890 28 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.723 1.761 -0.040 5.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C -0.004 4.004 4 C -0.174 4.174 5 C -0.187 4.187 6 C -0.139 4.139 7 C -0.190 4.190 8 O -0.267 6.267 9 S 0.256 5.744 10 C -0.222 4.222 11 C -0.199 4.199 12 C 0.080 3.920 13 C -0.478 4.478 14 H 0.105 0.895 15 C -0.186 4.186 16 N -0.432 5.432 17 Si 0.807 3.193 18 H -0.184 1.184 19 H -0.179 1.179 20 H -0.189 1.189 21 H 0.135 0.865 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.156 0.844 25 H 0.173 0.827 26 H 0.259 0.741 27 H 0.128 0.872 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.133 2.453 -0.498 4.832 hybrid contribution -0.873 -0.796 0.581 1.317 sum -5.006 1.656 0.084 5.273 Atomic orbital electron populations 1.23189 0.78094 1.04739 1.01331 1.86005 1.21966 1.26995 1.89796 1.18789 0.92207 0.84275 1.05109 1.20470 0.99158 0.90129 1.07667 1.17514 0.91293 0.93576 1.16356 1.20303 1.00924 0.90180 1.02450 1.21699 0.92882 0.87209 1.17257 1.84726 1.87100 1.19812 1.35022 1.83736 1.09412 0.99004 1.82203 1.22340 0.96863 0.95813 1.07216 1.20146 0.98329 0.88991 1.12409 1.17301 0.88865 0.93842 0.92022 1.19732 0.98132 0.96583 1.33341 0.89465 1.26891 0.99988 0.99822 0.91879 1.69935 1.20297 1.31898 1.21114 0.85099 0.76643 0.77431 0.80111 1.18381 1.17929 1.18889 0.86521 0.92765 0.92531 0.84418 0.82674 0.74137 0.87168 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.80 113.37 1.11 1.73 15 2 O -0.33 -14.35 9.77 -91.70 -0.90 -15.24 15 3 C 0.04 1.99 6.66 22.55 0.15 2.14 15 4 C -0.15 -6.64 9.02 22.60 0.20 -6.44 15 5 C -0.18 -8.20 5.88 -21.31 -0.13 -8.33 15 6 C -0.11 -4.09 10.15 21.67 0.22 -3.87 15 7 C -0.03 -1.18 7.53 66.73 0.50 -0.68 15 8 O -0.46 -13.75 13.64 -88.23 -1.20 -14.95 15 9 S 0.00 -0.08 23.29 -56.49 -1.32 -1.39 15 10 C -0.11 -5.28 6.45 22.92 0.15 -5.13 15 11 C -0.17 -9.27 8.69 22.89 0.20 -9.07 15 12 C 0.09 4.62 5.57 -21.25 -0.12 4.50 15 13 C -0.45 -23.68 8.68 23.28 0.20 -23.48 15 14 H 0.09 4.48 7.64 -2.91 -0.02 4.46 15 15 C 0.03 1.53 5.13 85.19 0.44 1.96 15 16 N -0.81 -41.26 10.99 21.81 0.24 -41.02 15 17 Si 0.99 36.82 29.59 68.60 2.03 38.85 15 18 H -0.26 -9.25 7.11 99.48 0.71 -8.54 15 19 H -0.26 -9.37 7.11 99.48 0.71 -8.66 15 20 H -0.26 -9.40 7.11 99.48 0.71 -8.69 15 21 H 0.12 2.65 8.14 -2.38 -0.02 2.63 15 22 H 0.05 1.47 7.62 -2.39 -0.02 1.45 15 23 H 0.06 1.51 7.65 -2.39 -0.02 1.49 15 24 H 0.14 4.87 6.14 -2.91 -0.02 4.86 15 25 H 0.16 4.89 8.06 -2.91 -0.02 4.86 15 26 H 0.40 7.73 9.06 -74.06 -0.67 7.06 15 27 H 0.11 6.19 6.19 -2.91 -0.02 6.17 15 28 H 0.29 13.46 8.30 -92.71 -0.77 12.69 15 Total: -1.00 -62.97 260.94 2.33 -60.65 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.54 Total: 19.78 kcal Atomic # 6 Polarization: -49.59 SS G_CDS: 2.93 Total: -46.66 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.24 Total: -41.02 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -2.10 Total: -30.20 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -1.32 Total: -1.39 kcal Total: -62.97 2.33 -60.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396382846.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.614 kcal (2) G-P(sol) polarization free energy of solvation -62.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds