Wall clock time and date at job start Mon Mar 30 2020 05:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35523 * 117.00270 * 2 1 4 4 C 1.33410 * 124.61443 * 179.97438 * 3 2 1 5 5 C 1.40266 * 115.73854 * 180.02562 * 4 3 2 6 6 C 1.41947 * 128.48581 * 179.97438 * 5 4 3 7 7 C 1.35715 * 120.81031 * 180.02562 * 6 5 4 8 8 O 1.35837 * 119.88599 * 179.97438 * 7 6 5 9 9 C 1.41755 * 120.22710 * 0.02562 * 7 6 5 10 10 C 1.40808 * 120.22369 * 179.97438 * 9 7 6 11 11 H 1.08000 * 120.00408 * 334.56715 * 10 9 7 12 12 C 1.39797 * 119.99673 * 154.55963 * 10 9 7 13 13 N 1.30971 * 120.00234 * 342.29333 * 12 10 9 14 14 Si 1.86803 * 119.99744 * 162.29169 * 12 10 9 15 15 H 1.48500 * 109.46932 * 90.00378 * 14 12 10 16 16 H 1.48508 * 109.46934 * 210.00063 * 14 12 10 17 17 H 1.48496 * 109.47249 * 330.00061 * 14 12 10 18 18 C 1.40426 * 119.54771 * 359.97438 * 9 7 6 19 19 C 1.38604 * 120.09038 * 0.02562 * 18 9 7 20 20 S 1.75466 * 124.61405 * 359.97438 * 3 2 1 21 21 H 1.09011 * 109.46724 * 300.00264 * 1 2 3 22 22 H 1.09000 * 109.47183 * 59.99585 * 1 2 3 23 23 H 1.08993 * 109.47434 * 180.02562 * 1 2 3 24 24 H 1.08000 * 122.13119 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.59639 * 359.74443 * 6 5 4 26 26 H 0.96698 * 113.99918 * 92.18006 * 8 7 6 27 27 H 0.97003 * 120.00389 * 179.97438 * 13 12 10 28 28 H 1.07994 * 119.95773 * 179.97438 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 3.3667 1.3842 0.0005 5 6 3.8031 2.7173 0.0010 6 6 5.1339 3.2111 0.0020 7 6 5.3800 4.5457 0.0029 8 8 6.6610 4.9977 0.0044 9 6 4.3050 5.4697 0.0032 10 6 4.5605 6.8544 0.0047 11 1 5.4889 7.2319 0.4071 12 6 3.6124 7.7406 -0.5150 13 7 2.6647 7.2977 -1.3031 14 14 3.6972 9.5566 -0.0854 15 1 4.5395 10.2626 -1.0840 16 1 2.3283 10.1324 -0.0968 17 1 4.2910 9.7183 1.2661 18 6 2.9836 4.9946 0.0022 19 6 2.7353 3.6310 0.0013 20 16 1.2102 2.7512 -0.0006 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 4.0572 0.5538 0.0013 25 1 5.9607 2.5162 0.0068 26 1 7.0217 5.1606 -0.8779 27 1 2.0066 7.9125 -1.6634 28 1 2.1595 5.6927 0.0029 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396382934.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:35 Heat of formation + Delta-G solvation = -45.468554 kcal Electronic energy + Delta-G solvation = -15406.232242 eV Core-core repulsion = 12706.918588 eV Total energy + Delta-G solvation = -2699.313654 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.79318 -38.19164 -36.03509 -34.53502 -32.17985 -29.26816 -28.50848 -26.98556 -24.66510 -22.26181 -21.46347 -19.92124 -17.85362 -17.44045 -16.92363 -15.57105 -15.41832 -15.28622 -14.76410 -14.18669 -13.71735 -13.43958 -12.70221 -12.64696 -12.31174 -11.89585 -11.83679 -11.57753 -11.28147 -11.08682 -10.75981 -10.61168 -10.25448 -9.80963 -9.57583 -9.26955 -8.98449 -8.48192 -7.21102 -6.97384 -6.76100 -4.48844 1.84562 2.20708 2.56069 2.76708 2.86056 2.96043 3.02137 3.43461 3.73864 3.75771 4.37398 5.16350 5.29547 5.33659 5.55041 5.60959 5.94587 6.21787 6.50550 6.60920 6.74935 6.85234 7.08630 7.13442 7.38845 7.49348 7.65586 7.72208 7.88324 8.19914 8.49721 8.55084 8.91957 9.88996 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.030684 B = 0.006862 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.298267 B = 4079.503000 C = 4904.325897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.293 6.293 3 C -0.034 4.034 4 C -0.120 4.120 5 C -0.173 4.173 6 C -0.079 4.079 7 C 0.017 3.983 8 O -0.497 6.497 9 C 0.103 3.897 10 C -0.428 4.428 11 H 0.092 0.908 12 C 0.070 3.930 13 N -0.775 5.775 14 Si 0.915 3.085 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.257 1.257 18 C -0.145 4.145 19 C -0.080 4.080 20 S -0.011 6.011 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.097 0.903 24 H 0.126 0.874 25 H 0.104 0.896 26 H 0.366 0.634 27 H 0.287 0.713 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.655 -4.420 0.034 5.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.209 6.209 3 C -0.191 4.191 4 C -0.150 4.150 5 C -0.179 4.179 6 C -0.100 4.100 7 C -0.029 4.029 8 O -0.304 6.304 9 C 0.096 3.904 10 C -0.456 4.456 11 H 0.110 0.890 12 C -0.150 4.150 13 N -0.399 5.399 14 Si 0.738 3.262 15 H -0.192 1.192 16 H -0.198 1.198 17 H -0.181 1.181 18 C -0.171 4.171 19 C -0.194 4.194 20 S 0.246 5.754 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.115 0.885 24 H 0.144 0.856 25 H 0.122 0.878 26 H 0.218 0.782 27 H 0.098 0.902 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.327 -4.276 0.502 6.104 hybrid contribution 1.117 0.516 -0.507 1.331 sum -3.210 -3.759 -0.005 4.944 Atomic orbital electron populations 1.23029 0.79061 1.03325 1.01547 1.85786 1.20212 1.23926 1.90938 1.22407 0.94628 0.87111 1.14971 1.19123 0.92082 0.96634 1.07204 1.17102 0.92861 0.90360 1.17553 1.20347 0.93940 0.94390 1.01347 1.17980 0.83698 0.90596 1.10585 1.84769 1.25775 1.87756 1.32108 1.17718 0.90043 0.93246 0.89385 1.19567 1.03164 0.90667 1.32209 0.89022 1.26077 0.93957 1.02404 0.92605 1.69881 1.11570 1.38283 1.20118 0.86185 0.78745 0.80690 0.80553 1.19167 1.19840 1.18085 1.20393 0.97261 0.90213 1.09238 1.22023 0.92449 0.97676 1.07271 1.83745 1.10337 0.97210 1.84152 0.92899 0.92859 0.88478 0.85594 0.87796 0.78170 0.90232 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.24 101.05 1.03 1.39 15 2 O -0.29 -5.25 10.55 -18.26 -0.19 -5.44 15 3 C -0.03 -0.70 7.16 29.04 0.21 -0.49 15 4 C -0.12 -2.55 10.15 -40.51 -0.41 -2.96 15 5 C -0.17 -4.03 5.88 -106.85 -0.63 -4.66 15 6 C -0.08 -1.80 9.91 -39.07 -0.39 -2.19 15 7 C 0.02 0.40 6.65 -39.14 -0.26 0.14 15 8 O -0.50 -10.59 12.76 -19.23 -0.25 -10.84 15 9 C 0.10 2.63 5.57 -106.76 -0.59 2.04 15 10 C -0.43 -10.67 8.68 -38.03 -0.33 -11.00 15 11 H 0.09 2.23 7.64 -52.49 -0.40 1.83 15 12 C 0.07 1.64 5.12 -17.34 -0.09 1.55 15 13 N -0.77 -18.82 11.00 55.54 0.61 -18.20 15 14 Si 0.91 17.51 29.59 -169.99 -5.03 12.48 15 15 H -0.27 -5.01 7.11 56.52 0.40 -4.60 15 16 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15 17 H -0.26 -4.94 7.11 56.52 0.40 -4.54 15 18 C -0.14 -3.71 8.69 -38.62 -0.34 -4.05 15 19 C -0.08 -1.93 6.45 -38.58 -0.25 -2.18 15 20 S -0.01 -0.23 21.96 -107.50 -2.36 -2.59 15 21 H 0.05 0.68 8.03 -51.92 -0.42 0.26 15 22 H 0.05 0.69 8.02 -51.93 -0.42 0.27 15 23 H 0.10 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.13 2.39 8.06 -52.49 -0.42 1.97 15 25 H 0.10 2.08 8.06 -52.48 -0.42 1.66 15 26 H 0.37 6.21 9.06 45.56 0.41 6.62 15 27 H 0.29 6.30 8.30 -40.82 -0.34 5.96 15 28 H 0.13 3.29 6.19 -52.49 -0.33 2.97 15 LS Contribution 263.20 15.07 3.97 3.97 Total: -1.00 -28.00 263.20 -6.84 -34.85 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -1.55 Total: 8.18 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -2.04 Total: -22.40 kcal Atomic # 7 Polarization: -18.82 SS G_CDS: 0.61 Total: -18.20 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.44 Total: -16.28 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -2.36 Total: -2.59 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.00 -6.84 -34.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396382934.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.622 kcal (2) G-P(sol) polarization free energy of solvation -28.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds