Wall clock time and date at job start Mon Mar 30 2020 05:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35523 * 117.00270 * 2 1 4 4 C 1.33410 * 124.61443 * 179.97438 * 3 2 1 5 5 C 1.40266 * 115.73854 * 180.02562 * 4 3 2 6 6 C 1.41947 * 128.48581 * 179.97438 * 5 4 3 7 7 C 1.35715 * 120.81031 * 180.02562 * 6 5 4 8 8 O 1.35837 * 119.88599 * 179.97438 * 7 6 5 9 9 C 1.41755 * 120.22710 * 0.02562 * 7 6 5 10 10 C 1.40808 * 120.22369 * 179.97438 * 9 7 6 11 11 H 1.08000 * 120.00408 * 334.56715 * 10 9 7 12 12 C 1.39797 * 119.99673 * 154.55963 * 10 9 7 13 13 N 1.30971 * 120.00234 * 342.29333 * 12 10 9 14 14 Si 1.86803 * 119.99744 * 162.29169 * 12 10 9 15 15 H 1.48500 * 109.46932 * 90.00378 * 14 12 10 16 16 H 1.48508 * 109.46934 * 210.00063 * 14 12 10 17 17 H 1.48496 * 109.47249 * 330.00061 * 14 12 10 18 18 C 1.40426 * 119.54771 * 359.97438 * 9 7 6 19 19 C 1.38604 * 120.09038 * 0.02562 * 18 9 7 20 20 S 1.75466 * 124.61405 * 359.97438 * 3 2 1 21 21 H 1.09011 * 109.46724 * 300.00264 * 1 2 3 22 22 H 1.09000 * 109.47183 * 59.99585 * 1 2 3 23 23 H 1.08993 * 109.47434 * 180.02562 * 1 2 3 24 24 H 1.08000 * 122.13119 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.59639 * 359.74443 * 6 5 4 26 26 H 0.96698 * 113.99918 * 92.18006 * 8 7 6 27 27 H 0.97003 * 120.00389 * 179.97438 * 13 12 10 28 28 H 1.07994 * 119.95773 * 179.97438 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 3.3667 1.3842 0.0005 5 6 3.8031 2.7173 0.0010 6 6 5.1339 3.2111 0.0020 7 6 5.3800 4.5457 0.0029 8 8 6.6610 4.9977 0.0044 9 6 4.3050 5.4697 0.0032 10 6 4.5605 6.8544 0.0047 11 1 5.4889 7.2319 0.4071 12 6 3.6124 7.7406 -0.5150 13 7 2.6647 7.2977 -1.3031 14 14 3.6972 9.5566 -0.0854 15 1 4.5395 10.2626 -1.0840 16 1 2.3283 10.1324 -0.0968 17 1 4.2910 9.7183 1.2661 18 6 2.9836 4.9946 0.0022 19 6 2.7353 3.6310 0.0013 20 16 1.2102 2.7512 -0.0006 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 4.0572 0.5538 0.0013 25 1 5.9607 2.5162 0.0068 26 1 7.0217 5.1606 -0.8779 27 1 2.0066 7.9125 -1.6634 28 1 2.1595 5.6927 0.0029 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396382934.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:35 Heat of formation + Delta-G solvation = -63.351037 kcal Electronic energy + Delta-G solvation = -15407.007685 eV Core-core repulsion = 12706.918588 eV Total energy + Delta-G solvation = -2700.089096 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.48652 -39.70783 -37.72833 -36.28798 -33.89470 -31.02255 -30.24742 -28.29654 -26.33900 -23.98852 -23.22602 -21.61726 -19.57928 -19.05881 -18.61439 -17.23407 -16.96064 -16.74708 -16.32384 -15.86360 -15.37569 -15.06903 -14.41991 -14.33817 -13.90755 -13.53472 -13.28504 -13.05736 -12.85655 -12.59251 -12.41648 -12.19270 -11.91874 -11.48727 -11.29012 -11.02053 -10.68143 -10.23619 -8.96766 -8.71269 -8.48138 -6.33685 0.13054 0.54477 0.73764 1.03700 1.30494 1.39454 1.53178 1.74054 2.16684 2.36381 2.61410 3.38317 3.83021 4.20678 4.30016 4.30592 4.59408 4.62401 4.83767 4.88770 5.02416 5.07977 5.27670 5.35151 5.63774 5.81093 5.86111 6.04746 6.15469 6.37869 6.70492 6.73466 7.24473 8.18058 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.030684 B = 0.006862 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.298267 B = 4079.503000 C = 4904.325897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.297 6.297 3 C -0.015 4.015 4 C -0.146 4.146 5 C -0.174 4.174 6 C -0.087 4.087 7 C 0.011 3.989 8 O -0.499 6.499 9 C 0.072 3.928 10 C -0.459 4.459 11 H 0.088 0.912 12 C 0.035 3.965 13 N -0.808 5.808 14 Si 0.986 3.014 15 H -0.257 1.257 16 H -0.266 1.266 17 H -0.259 1.259 18 C -0.167 4.167 19 C -0.112 4.112 20 S 0.020 5.980 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.138 0.862 24 H 0.149 0.851 25 H 0.130 0.870 26 H 0.385 0.615 27 H 0.294 0.706 28 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.155 -5.405 0.087 6.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.212 6.212 3 C -0.173 4.173 4 C -0.175 4.175 5 C -0.180 4.180 6 C -0.107 4.107 7 C -0.035 4.035 8 O -0.309 6.309 9 C 0.066 3.934 10 C -0.488 4.488 11 H 0.106 0.894 12 C -0.183 4.183 13 N -0.432 5.432 14 Si 0.806 3.194 15 H -0.181 1.181 16 H -0.190 1.190 17 H -0.183 1.183 18 C -0.193 4.193 19 C -0.227 4.227 20 S 0.277 5.723 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.156 0.844 24 H 0.167 0.833 25 H 0.148 0.852 26 H 0.241 0.759 27 H 0.105 0.895 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.828 -5.276 0.541 7.172 hybrid contribution 1.166 0.580 -0.538 1.409 sum -3.662 -4.696 0.003 5.955 Atomic orbital electron populations 1.23449 0.76354 1.06274 1.01977 1.85807 1.22835 1.22273 1.90310 1.22619 0.94701 0.87798 1.12163 1.19259 0.93057 0.96325 1.08885 1.17469 0.92979 0.91305 1.16228 1.20609 0.94726 0.94444 1.00920 1.18103 0.84092 0.90968 1.10337 1.84690 1.24674 1.87701 1.33846 1.18071 0.90774 0.94219 0.90303 1.19712 1.03995 0.91122 1.33933 0.89386 1.26870 0.93127 1.06503 0.91776 1.69924 1.12365 1.40002 1.20925 0.85136 0.79030 0.75176 0.80092 1.18127 1.19030 1.18304 1.20279 0.96988 0.90759 1.11260 1.22339 0.94854 0.97728 1.07770 1.83530 1.08376 0.96888 1.83510 0.92365 0.92452 0.84432 0.83344 0.85172 0.75941 0.89535 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.34 10.24 113.37 1.16 1.50 15 2 O -0.30 -9.69 10.55 -88.27 -0.93 -10.62 15 3 C -0.01 -0.57 7.16 66.73 0.48 -0.09 15 4 C -0.15 -5.92 10.15 21.67 0.22 -5.70 15 5 C -0.17 -8.01 5.88 -21.31 -0.13 -8.14 15 6 C -0.09 -3.88 9.91 22.60 0.22 -3.66 15 7 C 0.01 0.51 6.65 22.55 0.15 0.66 15 8 O -0.50 -21.25 12.76 -91.72 -1.17 -22.42 15 9 C 0.07 3.83 5.57 -21.25 -0.12 3.72 15 10 C -0.46 -23.62 8.68 23.28 0.20 -23.42 15 11 H 0.09 4.41 7.64 -2.91 -0.02 4.39 15 12 C 0.03 1.66 5.12 85.20 0.44 2.09 15 13 N -0.81 -40.30 11.00 21.81 0.24 -40.06 15 14 Si 0.99 36.17 29.59 68.60 2.03 38.20 15 15 H -0.26 -8.95 7.11 99.48 0.71 -8.25 15 16 H -0.27 -9.32 7.11 99.48 0.71 -8.61 15 17 H -0.26 -9.49 7.11 99.48 0.71 -8.79 15 18 C -0.17 -8.84 8.69 22.89 0.20 -8.65 15 19 C -0.11 -5.48 6.45 22.92 0.15 -5.34 15 20 S 0.02 0.81 21.96 -56.49 -1.24 -0.43 15 21 H 0.06 1.30 8.03 -2.38 -0.02 1.28 15 22 H 0.06 1.30 8.02 -2.39 -0.02 1.28 15 23 H 0.14 2.07 8.14 -2.39 -0.02 2.06 15 24 H 0.15 5.26 8.06 -2.91 -0.02 5.24 15 25 H 0.13 5.01 8.06 -2.91 -0.02 4.99 15 26 H 0.39 12.96 9.06 -74.06 -0.67 12.29 15 27 H 0.29 13.17 8.30 -92.71 -0.77 12.40 15 28 H 0.11 5.95 6.19 -2.91 -0.02 5.94 15 Total: -1.00 -60.58 263.20 2.44 -58.14 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.54 Total: 24.21 kcal Atomic # 6 Polarization: -50.00 SS G_CDS: 2.97 Total: -47.02 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.24 Total: -40.06 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -2.10 Total: -33.04 kcal Atomic # 14 Polarization: 36.17 SS G_CDS: 2.03 Total: 38.20 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -1.24 Total: -0.43 kcal Total: -60.58 2.44 -58.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396382934.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.208 kcal (2) G-P(sol) polarization free energy of solvation -60.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds