Wall clock time and date at job start Mon Mar 30 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35898 * 116.99971 * 2 1 4 4 C 1.38009 * 119.84723 * 0.02562 * 3 2 1 5 5 C 1.38533 * 120.24367 * 180.02562 * 4 3 2 6 6 C 1.38136 * 120.17387 * 0.25967 * 5 4 3 7 7 O 1.36000 * 119.80307 * 179.70091 * 6 5 4 8 8 C 1.40238 * 120.39470 * 359.44703 * 6 5 4 9 9 S 1.75788 * 130.17144 * 180.21689 * 8 6 5 10 10 C 1.69979 * 93.21980 * 180.32933 * 9 8 6 11 11 C 1.36483 * 111.92439 * 359.97438 * 10 9 8 12 12 C 1.40829 * 123.30150 * 180.02562 * 11 10 9 13 13 H 1.07995 * 119.99842 * 156.68100 * 12 11 10 14 14 C 1.39633 * 119.99620 * 336.68163 * 12 11 10 15 15 N 1.31115 * 120.00616 * 348.89586 * 14 12 11 16 16 Si 1.86801 * 119.99737 * 168.89856 * 14 12 11 17 17 H 1.48500 * 109.47083 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47237 * 119.99629 * 16 14 12 19 19 H 1.48500 * 109.47113 * 239.99713 * 16 14 12 20 20 C 1.39227 * 119.62796 * 0.56669 * 8 6 5 21 21 H 1.08999 * 109.47237 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47151 * 299.99937 * 1 2 3 23 23 H 1.09002 * 109.47109 * 59.99863 * 1 2 3 24 24 H 1.07996 * 119.88086 * 0.02562 * 4 3 2 25 25 H 1.07996 * 119.91416 * 179.97438 * 5 4 3 26 26 H 0.96697 * 114.00189 * 89.99460 * 7 6 5 27 27 H 1.08010 * 124.03696 * 180.02562 * 10 9 8 28 28 H 0.97000 * 120.00280 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3663 0.0005 5 6 1.9116 3.6050 0.0000 6 6 3.2903 3.6910 -0.0065 7 8 3.8914 4.9109 -0.0131 8 6 4.0738 2.5279 -0.0009 9 16 5.8214 2.3379 -0.0017 10 6 5.7329 0.6405 -0.0020 11 6 4.4420 0.1975 -0.0009 12 6 4.0926 -1.1668 -0.0004 13 1 3.1269 -1.4768 0.3707 14 6 4.9949 -2.1186 -0.4795 15 7 6.0693 -1.7363 -1.1265 16 14 4.6712 -3.9369 -0.1989 17 1 3.4011 -4.1033 0.5523 18 1 4.5667 -4.6290 -1.5086 19 1 5.7889 -4.5236 0.5833 20 6 3.4547 1.2809 -0.0007 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.2131 2.3046 0.0014 25 1 1.3158 4.5057 0.0000 26 1 4.0691 5.2666 0.8683 27 1 6.5953 -0.0099 -0.0021 28 1 6.6959 -2.3976 -1.4597 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396383188.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:08 Heat of formation + Delta-G solvation = -45.121492 kcal Electronic energy + Delta-G solvation = -15825.752230 eV Core-core repulsion = 13126.453626 eV Total energy + Delta-G solvation = -2699.298604 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.60694 -37.78264 -36.07160 -34.31813 -32.17560 -28.66161 -28.40563 -26.61229 -25.66309 -22.50976 -21.44800 -19.69250 -18.07274 -17.51405 -16.46330 -15.79436 -15.25854 -15.03431 -14.76183 -14.47649 -13.83181 -13.44003 -12.94797 -12.44481 -12.13805 -11.86163 -11.39149 -11.19224 -11.09086 -10.86386 -10.80914 -10.48894 -10.21913 -10.04475 -9.74165 -9.29612 -9.10637 -7.92828 -7.43050 -6.60310 -6.48210 -4.21220 1.77780 1.87864 2.79970 3.00282 3.14041 3.20301 3.67883 3.75351 3.99827 4.08463 4.36079 4.81208 5.31067 5.35323 5.48337 5.49514 5.52151 5.77899 5.96809 6.17018 6.54140 6.68112 6.86460 6.93575 7.13380 7.32747 7.75474 7.96751 8.06451 8.21589 8.60138 8.88284 8.98770 10.37819 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022071 B = 0.009786 C = 0.006887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.317840 B = 2860.470301 C = 4064.940736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.291 6.291 3 C 0.168 3.832 4 C -0.233 4.233 5 C -0.109 4.109 6 C 0.081 3.919 7 O -0.495 6.495 8 C -0.139 4.139 9 S 0.071 5.929 10 C -0.364 4.364 11 C 0.090 3.910 12 C -0.422 4.422 13 H 0.086 0.914 14 C 0.065 3.935 15 N -0.804 5.804 16 Si 0.912 3.088 17 H -0.261 1.261 18 H -0.277 1.277 19 H -0.275 1.275 20 C -0.078 4.078 21 H 0.093 0.907 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.375 0.625 27 H 0.163 0.837 28 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.223 4.817 3.149 9.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.204 6.204 3 C 0.120 3.880 4 C -0.256 4.256 5 C -0.130 4.130 6 C 0.031 3.969 7 O -0.303 6.303 8 C -0.256 4.256 9 S 0.336 5.664 10 C -0.500 4.500 11 C 0.081 3.919 12 C -0.455 4.455 13 H 0.105 0.895 14 C -0.150 4.150 15 N -0.432 5.432 16 Si 0.737 3.263 17 H -0.185 1.185 18 H -0.202 1.202 19 H -0.201 1.201 20 C -0.090 4.090 21 H 0.112 0.888 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.142 0.858 25 H 0.140 0.860 26 H 0.228 0.772 27 H 0.180 0.820 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.646 5.334 2.405 8.131 hybrid contribution -1.471 -1.712 0.430 2.297 sum -7.117 3.623 2.835 8.474 Atomic orbital electron populations 1.22999 0.80282 1.03233 1.00595 1.86324 1.19524 1.26662 1.87850 1.18860 0.90388 0.83905 0.94836 1.20600 0.99055 0.91663 1.14298 1.20639 0.92753 0.97119 1.02478 1.17571 0.89508 0.82544 1.07308 1.84873 1.81082 1.31776 1.32619 1.22856 0.99404 0.95103 1.08201 1.81915 0.98558 1.06710 1.79209 1.24405 1.01698 0.93902 1.29980 1.17252 0.88260 0.92044 0.94331 1.19150 1.01561 0.89681 1.35059 0.89549 1.25806 0.94601 1.01334 0.93230 1.69900 1.10247 1.35719 1.27293 0.86193 0.79374 0.81993 0.78710 1.18517 1.20225 1.20063 1.18969 0.90596 0.93426 1.05969 0.88830 0.93270 0.93217 0.85827 0.85954 0.77155 0.81969 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.80 101.05 0.99 1.34 15 2 O -0.29 -6.02 8.42 -19.42 -0.16 -6.18 15 3 C 0.17 3.63 6.74 -38.60 -0.26 3.37 15 4 C -0.23 -4.19 9.01 -39.56 -0.36 -4.54 15 5 C -0.11 -1.91 9.96 -39.51 -0.39 -2.31 15 6 C 0.08 1.60 6.73 -38.87 -0.26 1.34 15 7 O -0.50 -8.52 13.47 -19.74 -0.27 -8.79 15 8 C -0.14 -3.21 6.39 -38.46 -0.25 -3.45 15 9 S 0.07 1.64 22.92 -107.50 -2.46 -0.83 15 10 C -0.36 -9.76 9.50 30.10 0.29 -9.48 15 11 C 0.09 2.46 5.68 -106.19 -0.60 1.86 15 12 C -0.42 -11.57 8.70 -38.08 -0.33 -11.90 15 13 H 0.09 2.32 6.37 -52.49 -0.33 1.98 15 14 C 0.07 1.71 5.35 -17.34 -0.09 1.61 15 15 N -0.80 -21.75 10.84 55.53 0.60 -21.14 15 16 Si 0.91 19.58 29.57 -169.99 -5.03 14.56 15 17 H -0.26 -5.52 7.11 56.52 0.40 -5.12 15 18 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 19 H -0.28 -5.80 7.11 56.52 0.40 -5.40 15 20 C -0.08 -1.94 6.03 -105.10 -0.63 -2.57 15 21 H 0.09 1.12 8.14 -51.93 -0.42 0.70 15 22 H 0.05 0.60 7.64 -51.93 -0.40 0.20 15 23 H 0.05 0.63 7.65 -51.93 -0.40 0.23 15 24 H 0.12 1.78 6.24 -52.49 -0.33 1.46 15 25 H 0.12 1.75 8.06 -52.49 -0.42 1.33 15 26 H 0.37 4.59 9.06 45.56 0.41 5.00 15 27 H 0.16 4.58 6.33 -52.48 -0.33 4.25 15 28 H 0.27 6.79 8.30 -40.82 -0.34 6.45 15 LS Contribution 258.23 15.07 3.89 3.89 Total: -1.00 -30.91 258.23 -6.68 -37.60 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -1.35 Total: 5.64 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -1.90 Total: -24.74 kcal Atomic # 7 Polarization: -21.75 SS G_CDS: 0.60 Total: -21.14 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.43 Total: -14.97 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.56 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.46 Total: -0.83 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.91 -6.68 -37.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396383188.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.526 kcal (2) G-P(sol) polarization free energy of solvation -30.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds