Wall clock time and date at job start Mon Mar 30 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35898 * 116.99971 * 2 1 4 4 C 1.38009 * 119.84723 * 0.02562 * 3 2 1 5 5 C 1.38533 * 120.24367 * 180.02562 * 4 3 2 6 6 C 1.38136 * 120.17387 * 0.25967 * 5 4 3 7 7 O 1.36000 * 119.80307 * 179.70091 * 6 5 4 8 8 C 1.40238 * 120.39470 * 359.44703 * 6 5 4 9 9 S 1.75788 * 130.17144 * 180.21689 * 8 6 5 10 10 C 1.69979 * 93.21980 * 180.32933 * 9 8 6 11 11 C 1.36483 * 111.92439 * 359.97438 * 10 9 8 12 12 C 1.40829 * 123.30150 * 180.02562 * 11 10 9 13 13 H 1.07995 * 119.99842 * 156.68100 * 12 11 10 14 14 C 1.39633 * 119.99620 * 336.68163 * 12 11 10 15 15 N 1.31115 * 120.00616 * 348.89586 * 14 12 11 16 16 Si 1.86801 * 119.99737 * 168.89856 * 14 12 11 17 17 H 1.48500 * 109.47083 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47237 * 119.99629 * 16 14 12 19 19 H 1.48500 * 109.47113 * 239.99713 * 16 14 12 20 20 C 1.39227 * 119.62796 * 0.56669 * 8 6 5 21 21 H 1.08999 * 109.47237 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47151 * 299.99937 * 1 2 3 23 23 H 1.09002 * 109.47109 * 59.99863 * 1 2 3 24 24 H 1.07996 * 119.88086 * 0.02562 * 4 3 2 25 25 H 1.07996 * 119.91416 * 179.97438 * 5 4 3 26 26 H 0.96697 * 114.00189 * 89.99460 * 7 6 5 27 27 H 1.08010 * 124.03696 * 180.02562 * 10 9 8 28 28 H 0.97000 * 120.00280 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3663 0.0005 5 6 1.9116 3.6050 0.0000 6 6 3.2903 3.6910 -0.0065 7 8 3.8914 4.9109 -0.0131 8 6 4.0738 2.5279 -0.0009 9 16 5.8214 2.3379 -0.0017 10 6 5.7329 0.6405 -0.0020 11 6 4.4420 0.1975 -0.0009 12 6 4.0926 -1.1668 -0.0004 13 1 3.1269 -1.4768 0.3707 14 6 4.9949 -2.1186 -0.4795 15 7 6.0693 -1.7363 -1.1265 16 14 4.6712 -3.9369 -0.1989 17 1 3.4011 -4.1033 0.5523 18 1 4.5667 -4.6290 -1.5086 19 1 5.7889 -4.5236 0.5833 20 6 3.4547 1.2809 -0.0007 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.2131 2.3046 0.0014 25 1 1.3158 4.5057 0.0000 26 1 4.0691 5.2666 0.8683 27 1 6.5953 -0.0099 -0.0021 28 1 6.6959 -2.3976 -1.4597 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396383188.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:08 Heat of formation + Delta-G solvation = -66.820600 kcal Electronic energy + Delta-G solvation = -15826.693174 eV Core-core repulsion = 13126.453626 eV Total energy + Delta-G solvation = -2700.239548 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.12812 -39.20614 -37.73255 -36.00966 -33.98058 -30.35042 -29.88165 -28.13106 -27.39663 -24.17874 -22.98005 -21.50392 -19.65653 -18.96932 -18.30092 -17.39741 -16.83769 -16.53554 -16.36986 -15.96748 -15.34651 -14.99975 -14.65293 -14.00444 -13.62866 -13.42197 -13.12696 -12.85673 -12.74179 -12.59259 -12.24855 -12.09085 -11.92605 -11.59177 -11.31624 -11.15819 -10.96856 -9.62910 -9.18121 -8.54860 -8.22444 -6.23959 0.14080 0.33429 1.09524 1.27708 1.36640 1.52791 1.88130 1.95195 2.24779 2.59064 2.69684 3.37941 3.42237 3.95539 4.09803 4.36801 4.48484 4.54997 4.61730 4.76298 4.91419 5.13503 5.31198 5.32255 5.40889 5.65051 5.77141 6.02787 6.55752 6.64659 6.88239 6.93675 6.99541 8.44323 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022071 B = 0.009786 C = 0.006887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.317840 B = 2860.470301 C = 4064.940736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.326 6.326 3 C 0.151 3.849 4 C -0.213 4.213 5 C -0.089 4.089 6 C 0.077 3.923 7 O -0.497 6.497 8 C -0.153 4.153 9 S 0.085 5.915 10 C -0.401 4.401 11 C 0.066 3.934 12 C -0.452 4.452 13 H 0.084 0.916 14 C 0.019 3.981 15 N -0.839 5.839 16 Si 0.987 3.013 17 H -0.255 1.255 18 H -0.268 1.268 19 H -0.268 1.268 20 C -0.125 4.125 21 H 0.110 0.890 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.169 0.831 25 H 0.170 0.830 26 H 0.399 0.601 27 H 0.136 0.864 28 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.149 5.849 3.419 12.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C 0.103 3.897 4 C -0.235 4.235 5 C -0.110 4.110 6 C 0.026 3.974 7 O -0.308 6.308 8 C -0.269 4.269 9 S 0.348 5.652 10 C -0.537 4.537 11 C 0.057 3.943 12 C -0.485 4.485 13 H 0.102 0.898 14 C -0.193 4.193 15 N -0.467 5.467 16 Si 0.808 3.192 17 H -0.178 1.178 18 H -0.193 1.193 19 H -0.193 1.193 20 C -0.135 4.135 21 H 0.129 0.871 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.186 0.814 25 H 0.187 0.813 26 H 0.256 0.744 27 H 0.153 0.847 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.588 6.392 2.692 11.039 hybrid contribution -0.729 -1.882 0.354 2.049 sum -9.316 4.510 3.046 10.789 Atomic orbital electron populations 1.23394 0.77001 1.05227 1.02494 1.86263 1.22986 1.26802 1.87832 1.19052 0.89627 0.85603 0.95412 1.21103 1.01014 0.90311 1.11072 1.21179 0.91956 0.98717 0.99131 1.17738 0.90303 0.82299 1.07068 1.84812 1.80967 1.30284 1.34783 1.23201 0.98977 0.96157 1.08594 1.81442 0.99720 1.03609 1.80399 1.24259 1.01024 0.96179 1.32265 1.17722 0.89419 0.93262 0.93900 1.19412 1.02042 0.90651 1.36388 0.89829 1.26779 0.94001 1.06129 0.92343 1.70011 1.11198 1.37493 1.27969 0.85076 0.79482 0.75694 0.78914 1.17849 1.19271 1.19261 1.19160 0.92362 0.93189 1.08819 0.87132 0.90961 0.91401 0.81418 0.81280 0.74364 0.84678 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 9.80 113.37 1.11 1.44 15 2 O -0.33 -13.16 8.42 -92.40 -0.78 -13.94 15 3 C 0.15 6.36 6.74 22.90 0.15 6.51 15 4 C -0.21 -6.75 9.01 22.29 0.20 -6.55 15 5 C -0.09 -2.70 9.96 22.32 0.22 -2.48 15 6 C 0.08 2.83 6.73 22.73 0.15 2.98 15 7 O -0.50 -15.56 13.47 -93.55 -1.26 -16.82 15 8 C -0.15 -7.06 6.39 22.99 0.15 -6.92 15 9 S 0.08 4.03 22.92 -56.49 -1.30 2.74 15 10 C -0.40 -22.98 9.50 67.41 0.64 -22.34 15 11 C 0.07 3.81 5.68 -20.88 -0.12 3.69 15 12 C -0.45 -25.97 8.70 23.24 0.20 -25.77 15 13 H 0.08 4.67 6.37 -2.91 -0.02 4.65 15 14 C 0.02 1.04 5.35 85.14 0.46 1.49 15 15 N -0.84 -47.63 10.84 21.78 0.24 -47.39 15 16 Si 0.99 41.11 29.57 68.60 2.03 43.14 15 17 H -0.26 -10.22 7.11 99.48 0.71 -9.51 15 18 H -0.27 -10.67 7.11 99.48 0.71 -9.96 15 19 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 20 C -0.12 -6.33 6.03 -20.18 -0.12 -6.45 15 21 H 0.11 2.34 8.14 -2.39 -0.02 2.33 15 22 H 0.07 1.46 7.64 -2.39 -0.02 1.45 15 23 H 0.07 1.44 7.65 -2.39 -0.02 1.42 15 24 H 0.17 3.79 6.24 -2.91 -0.02 3.78 15 25 H 0.17 3.63 8.06 -2.91 -0.02 3.60 15 26 H 0.40 8.43 9.06 -74.06 -0.67 7.75 15 27 H 0.14 8.28 6.33 -2.91 -0.02 8.26 15 28 H 0.28 14.48 8.30 -92.71 -0.77 13.71 15 Total: -1.00 -71.73 258.23 2.52 -69.20 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.55 Total: 17.47 kcal Atomic # 6 Polarization: -57.44 SS G_CDS: 3.05 Total: -54.40 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.24 Total: -47.39 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -2.04 Total: -30.76 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.30 Total: 2.74 kcal Total: -71.73 2.52 -69.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396383188.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.383 kcal (2) G-P(sol) polarization free energy of solvation -71.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds