Wall clock time and date at job start Mon Mar 30 2020 05:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35780 * 116.99551 * 2 1 4 4 C 1.38446 * 119.90365 * 180.02562 * 3 2 1 5 5 C 1.39348 * 120.52812 * 179.97438 * 4 3 2 6 6 S 1.76023 * 130.12420 * 180.02562 * 5 4 3 7 7 C 1.75456 * 91.77248 * 180.02562 * 6 5 4 8 8 C 1.39853 * 124.83722 * 179.97438 * 7 6 5 9 9 H 1.08008 * 119.99904 * 180.02562 * 8 7 6 10 10 C 1.40036 * 120.00566 * 0.02806 * 8 7 6 11 11 N 1.30864 * 120.00008 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00235 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47339 * 59.99574 * 12 10 8 14 14 H 1.48504 * 109.47107 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46877 * 299.99634 * 12 10 8 16 16 C 1.37035 * 110.31751 * 0.02562 * 7 6 5 17 17 C 1.39560 * 115.06322 * 359.76960 * 16 7 6 18 18 C 1.42533 * 128.42058 * 179.69710 * 17 16 7 19 19 O 1.35722 * 119.84592 * 0.56052 * 18 17 16 20 20 C 1.37428 * 120.30587 * 180.28326 * 18 17 16 21 21 H 1.08994 * 109.47199 * 299.99718 * 1 2 3 22 22 H 1.08999 * 109.46863 * 60.00372 * 1 2 3 23 23 H 1.09002 * 109.47080 * 180.02562 * 1 2 3 24 24 H 1.08001 * 119.73550 * 0.02562 * 4 3 2 25 25 H 0.96999 * 120.00303 * 180.02562 * 11 10 8 26 26 H 1.08002 * 122.46748 * 179.97438 * 16 7 6 27 27 H 0.96700 * 114.00318 * 269.72516 * 19 18 17 28 28 H 1.07999 * 119.80887 * 180.22940 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 3.4281 1.2801 -0.0005 5 6 4.0741 2.5148 -0.0011 6 16 5.7926 2.8959 -0.0024 7 6 5.4659 4.6198 -0.0014 8 6 6.4449 5.6184 -0.0014 9 1 6.1550 6.6589 -0.0003 10 6 7.8011 5.2696 -0.0027 11 7 8.1525 4.0090 -0.0035 12 14 9.1088 6.6036 -0.0019 13 1 8.9561 7.4457 1.2116 14 1 10.4551 5.9770 -0.0042 15 1 8.9545 7.4486 -1.2134 16 6 4.1146 4.8480 0.0004 17 6 3.3212 3.6999 -0.0040 18 6 1.8990 3.6061 0.0024 19 8 1.1475 4.7363 0.0029 20 6 1.2850 2.3765 0.0024 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 4.0106 0.3707 -0.0014 25 1 9.0919 3.7673 -0.0041 26 1 3.6947 5.8430 0.0017 27 1 0.9300 5.0637 0.8864 28 1 0.2068 2.3148 0.0035 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396383203.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:49 Heat of formation + Delta-G solvation = -63.553786 kcal Electronic energy + Delta-G solvation = -15336.806579 eV Core-core repulsion = 12636.708691 eV Total energy + Delta-G solvation = -2700.097888 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.35800 -37.67531 -35.76309 -34.65930 -32.61010 -29.19065 -28.77064 -26.89673 -24.91901 -22.23634 -21.48810 -19.30669 -18.55448 -17.53014 -16.30312 -15.75983 -15.26294 -15.11283 -14.90522 -14.42165 -13.83995 -13.37915 -12.86764 -12.55276 -12.24404 -12.04460 -11.65383 -11.55703 -11.08346 -11.06772 -10.84922 -10.60965 -10.20131 -9.99096 -9.81108 -9.09881 -9.04577 -8.34162 -7.21090 -7.20599 -6.40015 -4.64072 1.92199 2.19646 2.81147 2.83573 2.88029 3.12932 3.52136 3.56022 3.76736 4.03232 4.46900 4.88221 5.12361 5.40055 5.44754 5.60136 5.73519 5.94577 6.26496 6.47181 6.65439 6.80047 6.93005 7.12602 7.28017 7.41247 7.52046 7.73637 7.90804 8.07270 8.23032 8.37932 8.53180 9.63866 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.044006 B = 0.006077 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.126097 B = 4606.761171 C = 5225.217975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.325 6.325 3 C 0.054 3.946 4 C -0.088 4.088 5 C -0.226 4.226 6 S 0.155 5.845 7 C 0.050 3.950 8 C -0.383 4.383 9 H 0.099 0.901 10 C 0.052 3.948 11 N -0.780 5.780 12 Si 0.940 3.060 13 H -0.259 1.259 14 H -0.273 1.273 15 H -0.259 1.259 16 C -0.352 4.352 17 C -0.022 4.022 18 C 0.090 3.910 19 O -0.497 6.497 20 C -0.205 4.205 21 H 0.046 0.954 22 H 0.047 0.953 23 H 0.088 0.912 24 H 0.113 0.887 25 H 0.302 0.698 26 H 0.108 0.892 27 H 0.372 0.628 28 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.406 -2.132 1.593 5.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.240 6.240 3 C 0.008 3.992 4 C -0.111 4.111 5 C -0.341 4.341 6 S 0.416 5.584 7 C -0.069 4.069 8 C -0.417 4.417 9 H 0.117 0.883 10 C -0.168 4.168 11 N -0.407 5.407 12 Si 0.763 3.237 13 H -0.183 1.183 14 H -0.197 1.197 15 H -0.183 1.183 16 C -0.377 4.377 17 C -0.030 4.030 18 C 0.044 3.956 19 O -0.305 6.305 20 C -0.226 4.226 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.107 0.893 24 H 0.131 0.869 25 H 0.116 0.884 26 H 0.126 0.874 27 H 0.226 0.774 28 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.753 -3.336 0.972 4.433 hybrid contribution -1.168 1.610 0.494 2.050 sum -3.922 -1.726 1.466 4.528 Atomic orbital electron populations 1.22824 0.80075 1.02493 1.00694 1.85929 1.19918 1.27531 1.90634 1.18144 0.91440 0.82983 1.06601 1.19321 0.90453 0.95870 1.05476 1.23394 1.02978 0.94806 1.12948 1.84890 0.94233 1.01264 1.78058 1.21433 0.95187 0.95431 0.94880 1.19246 0.89350 0.94940 1.38163 0.88333 1.26306 1.00895 0.97257 0.92384 1.68599 1.21159 1.17752 1.33141 0.85781 0.77639 0.79824 0.80462 1.18350 1.19705 1.18340 1.19450 0.91156 0.96437 1.30671 1.18240 0.91779 0.93212 0.99775 1.18074 0.87696 0.84496 1.05351 1.84742 1.71769 1.41774 1.32219 1.20799 0.98784 0.91888 1.11173 0.93535 0.93455 0.89319 0.86861 0.88432 0.87366 0.77429 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.81 101.05 0.99 1.45 15 2 O -0.33 -5.96 10.49 -19.05 -0.20 -6.16 15 3 C 0.05 1.12 6.69 -39.12 -0.26 0.86 15 4 C -0.09 -1.96 9.99 -39.09 -0.39 -2.35 15 5 C -0.23 -5.53 6.46 -38.35 -0.25 -5.78 15 6 S 0.16 3.82 20.12 -107.50 -2.16 1.66 15 7 C 0.05 1.30 6.11 -39.41 -0.24 1.06 15 8 C -0.38 -9.46 9.26 -38.30 -0.35 -9.81 15 9 H 0.10 2.29 7.85 -52.48 -0.41 1.88 15 10 C 0.05 1.19 5.50 -17.29 -0.10 1.09 15 11 N -0.78 -18.09 10.58 55.55 0.59 -17.50 15 12 Si 0.94 16.84 29.56 -169.99 -5.03 11.81 15 13 H -0.26 -4.59 7.11 56.52 0.40 -4.19 15 14 H -0.27 -4.71 7.11 56.52 0.40 -4.31 15 15 H -0.26 -4.62 7.11 56.52 0.40 -4.21 15 16 C -0.35 -9.09 9.97 -39.53 -0.39 -9.48 15 17 C -0.02 -0.54 5.87 -106.93 -0.63 -1.17 15 18 C 0.09 2.00 6.78 -38.22 -0.26 1.75 15 19 O -0.50 -9.88 13.34 -18.87 -0.25 -10.13 15 20 C -0.21 -4.16 8.91 -39.50 -0.35 -4.51 15 21 H 0.05 0.57 7.65 -51.93 -0.40 0.17 15 22 H 0.05 0.60 7.66 -51.93 -0.40 0.20 15 23 H 0.09 0.90 8.14 -51.93 -0.42 0.48 15 24 H 0.11 2.33 8.06 -52.49 -0.42 1.91 15 25 H 0.30 6.28 8.30 -40.82 -0.34 5.94 15 26 H 0.11 2.72 8.06 -52.49 -0.42 2.29 15 27 H 0.37 5.55 9.06 45.56 0.41 5.96 15 28 H 0.12 2.01 6.27 -52.49 -0.33 1.68 15 LS Contribution 261.78 15.07 3.94 3.94 Total: -1.00 -28.58 261.78 -6.86 -35.45 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -1.53 Total: 7.80 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: -2.23 Total: -26.88 kcal Atomic # 7 Polarization: -18.09 SS G_CDS: 0.59 Total: -17.50 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.45 Total: -16.29 kcal Atomic # 14 Polarization: 16.84 SS G_CDS: -5.03 Total: 11.81 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -2.16 Total: 1.66 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.58 -6.86 -35.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396383203.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.107 kcal (2) G-P(sol) polarization free energy of solvation -28.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds