Wall clock time and date at job start Mon Mar 30 2020 05:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35877 * 116.99965 * 2 1 4 4 C 1.35637 * 119.84399 * 359.97438 * 3 2 1 5 5 C 1.42084 * 120.98061 * 179.97438 * 4 3 2 6 6 C 1.40549 * 128.49607 * 180.02562 * 5 4 3 7 7 C 1.32446 * 115.87507 * 179.97438 * 6 5 4 8 8 S 1.75478 * 110.80002 * 359.97438 * 7 6 5 9 9 C 1.40040 * 119.12005 * 0.02562 * 5 4 3 10 10 C 1.39463 * 120.23342 * 359.76589 * 9 5 4 11 11 O 1.35695 * 120.04150 * 180.28342 * 10 9 5 12 12 C 1.40923 * 119.91979 * 0.43449 * 10 9 5 13 13 C 1.40749 * 120.28398 * 179.77350 * 12 10 9 14 14 H 1.07996 * 119.99800 * 141.21385 * 13 12 10 15 15 C 1.39824 * 120.00002 * 321.21514 * 13 12 10 16 16 N 1.30991 * 120.00175 * 339.60658 * 15 13 12 17 17 Si 1.86803 * 120.00201 * 159.60605 * 15 13 12 18 18 H 1.48492 * 109.46962 * 59.99898 * 17 15 13 19 19 H 1.48501 * 109.47212 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47027 * 300.00145 * 17 15 13 21 21 H 1.08994 * 109.46806 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46824 * 300.00152 * 1 2 3 23 23 H 1.08999 * 109.47309 * 59.99703 * 1 2 3 24 24 H 1.07997 * 119.50839 * 359.97438 * 4 3 2 25 25 H 1.08003 * 122.06379 * 0.02562 * 6 5 4 26 26 H 1.08007 * 124.60180 * 179.97438 * 7 6 5 27 27 H 0.96698 * 114.00133 * 87.20473 * 11 10 9 28 28 H 0.97001 * 120.00593 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.3041 2.3462 -0.0005 5 6 1.9239 3.6247 0.0000 6 6 1.3157 4.8918 0.0001 7 6 2.1399 5.9286 0.0012 8 16 3.8118 5.3955 0.0030 9 6 3.3220 3.7043 0.0005 10 6 4.0916 2.5412 0.0055 11 8 5.4461 2.6228 0.0118 12 6 3.4608 1.2810 0.0007 13 6 4.2300 0.1023 0.0008 14 1 3.9126 -0.7495 0.5838 15 6 5.4051 0.0343 -0.7539 16 7 5.5942 0.8661 -1.7480 17 14 6.7055 -1.2428 -0.3445 18 1 6.1205 -2.6021 -0.4682 19 1 7.8464 -1.1069 -1.2854 20 1 7.1836 -1.0344 1.0458 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 0.2263 2.2775 -0.0014 25 1 0.2424 5.0126 0.0001 26 1 1.8257 6.9619 0.0010 27 1 5.8319 2.6905 0.8959 28 1 6.4096 0.8192 -2.2713 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396383393.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:59 Heat of formation + Delta-G solvation = -34.805384 kcal Electronic energy + Delta-G solvation = -16003.482242 eV Core-core repulsion = 13304.630978 eV Total energy + Delta-G solvation = -2698.851264 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.16147 -37.26577 -36.02668 -33.74239 -32.42171 -29.20576 -28.16825 -26.69641 -24.93261 -22.22521 -21.14663 -19.60926 -17.88141 -17.02552 -16.28020 -15.57831 -15.29369 -15.11582 -14.77910 -13.80796 -13.60928 -13.15984 -12.99480 -12.40471 -12.08482 -11.86299 -11.47375 -11.33984 -11.14493 -10.94614 -10.66713 -10.53209 -10.11013 -9.85634 -9.35588 -9.20618 -8.83154 -8.26900 -7.15392 -6.80321 -6.54377 -4.34007 1.80956 2.58962 2.67973 3.00029 3.07521 3.08119 3.10403 3.44820 3.92174 4.24518 4.53359 5.19564 5.57239 5.68269 5.71612 5.72351 5.91475 6.08357 6.19351 6.38411 6.70817 6.87317 6.94943 7.06775 7.33552 7.47575 7.58007 7.72739 8.03453 8.41921 8.60277 8.76168 9.20343 10.14722 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021099 B = 0.010190 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.769878 B = 2747.190091 C = 3930.719867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.308 6.308 3 C 0.067 3.933 4 C -0.163 4.163 5 C -0.168 4.168 6 C -0.080 4.080 7 C -0.265 4.265 8 S 0.023 5.977 9 C -0.106 4.106 10 C 0.049 3.951 11 O -0.457 6.457 12 C 0.104 3.896 13 C -0.431 4.431 14 H 0.088 0.912 15 C 0.083 3.917 16 N -0.736 5.736 17 Si 0.909 3.091 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.263 1.263 21 H 0.086 0.914 22 H 0.043 0.957 23 H 0.044 0.956 24 H 0.105 0.895 25 H 0.118 0.882 26 H 0.145 0.855 27 H 0.345 0.655 28 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.981 1.517 3.110 5.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.222 6.222 3 C 0.022 3.978 4 C -0.185 4.185 5 C -0.174 4.174 6 C -0.111 4.111 7 C -0.399 4.399 8 S 0.283 5.717 9 C -0.222 4.222 10 C -0.004 4.004 11 O -0.262 6.262 12 C 0.097 3.903 13 C -0.459 4.459 14 H 0.106 0.894 15 C -0.141 4.141 16 N -0.357 5.357 17 Si 0.733 3.267 18 H -0.191 1.191 19 H -0.203 1.203 20 H -0.188 1.188 21 H 0.104 0.896 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.123 0.877 25 H 0.136 0.864 26 H 0.163 0.837 27 H 0.196 0.804 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.485 2.206 2.264 4.021 hybrid contribution -1.039 -0.906 0.489 1.462 sum -3.524 1.301 2.752 4.657 Atomic orbital electron populations 1.22822 0.81169 1.02233 1.00278 1.86081 1.18700 1.27632 1.89756 1.18593 0.92284 0.82947 1.04008 1.20221 0.97656 0.91011 1.09581 1.17289 0.91098 0.92639 1.16382 1.19680 0.99116 0.91316 1.00988 1.24565 0.96015 1.01419 1.17859 1.83650 1.07099 0.99524 1.81405 1.22700 0.96412 0.95094 1.08006 1.17030 0.82129 0.88076 1.13196 1.85004 1.16485 1.95368 1.29338 1.17042 0.87587 0.93039 0.92595 1.19230 1.04572 0.98741 1.23336 0.89447 1.25802 0.98272 0.96453 0.93558 1.69777 1.24943 1.30305 1.10710 0.86355 0.79744 0.80972 0.79609 1.19125 1.20336 1.18771 0.89570 0.93859 0.93754 0.87729 0.86369 0.83729 0.80400 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.80 101.05 0.99 1.48 15 2 O -0.31 -6.79 9.93 -19.35 -0.19 -6.98 15 3 C 0.07 1.61 6.65 -39.20 -0.26 1.35 15 4 C -0.16 -3.64 9.02 -39.04 -0.35 -3.99 15 5 C -0.17 -3.86 5.88 -106.88 -0.63 -4.49 15 6 C -0.08 -1.60 10.13 -40.63 -0.41 -2.01 15 7 C -0.27 -5.02 11.09 28.81 0.32 -4.70 15 8 S 0.02 0.48 23.26 -107.50 -2.50 -2.02 15 9 C -0.11 -2.58 6.41 -38.45 -0.25 -2.83 15 10 C 0.05 1.25 6.21 -38.11 -0.24 1.01 15 11 O -0.46 -11.14 10.33 -18.79 -0.19 -11.33 15 12 C 0.10 2.72 5.37 -106.62 -0.57 2.15 15 13 C -0.43 -11.12 8.38 -38.04 -0.32 -11.44 15 14 H 0.09 2.20 7.90 -52.49 -0.41 1.78 15 15 C 0.08 2.05 4.38 -17.32 -0.08 1.98 15 16 N -0.74 -19.19 11.25 55.54 0.62 -18.56 15 17 Si 0.91 18.35 29.61 -169.99 -5.03 13.31 15 18 H -0.27 -5.33 7.11 56.52 0.40 -4.92 15 19 H -0.28 -5.53 7.11 56.52 0.40 -5.13 15 20 H -0.26 -5.22 7.11 56.52 0.40 -4.82 15 21 H 0.09 1.12 8.14 -51.93 -0.42 0.69 15 22 H 0.04 0.63 7.63 -51.93 -0.40 0.23 15 23 H 0.04 0.67 7.63 -51.93 -0.40 0.28 15 24 H 0.10 2.00 6.13 -52.49 -0.32 1.67 15 25 H 0.12 1.99 8.06 -52.48 -0.42 1.56 15 26 H 0.14 2.26 8.06 -52.48 -0.42 1.83 15 27 H 0.34 7.02 9.06 45.56 0.41 7.43 15 28 H 0.28 6.85 8.30 -40.82 -0.34 6.51 15 LS Contribution 259.93 15.07 3.92 3.92 Total: -1.00 -29.34 259.93 -6.69 -36.03 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -1.52 Total: 7.13 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -1.79 Total: -21.49 kcal Atomic # 7 Polarization: -19.19 SS G_CDS: 0.62 Total: -18.56 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.39 Total: -18.31 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.31 kcal Atomic # 16 Polarization: 0.48 SS G_CDS: -2.50 Total: -2.02 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.34 -6.69 -36.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396383393.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.222 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds