Wall clock time and date at job start Mon Mar 30 2020 05:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35962 * 117.00136 * 2 1 4 4 C 1.38019 * 119.79006 * 359.97438 * 3 2 1 5 5 C 1.39372 * 120.13502 * 180.02562 * 4 3 2 6 6 O 1.35975 * 119.78433 * 179.97438 * 5 4 3 7 7 C 1.37317 * 120.43155 * 359.97438 * 5 4 3 8 8 C 1.42044 * 120.41941 * 359.97017 * 7 5 4 9 9 C 1.39804 * 128.39600 * 180.02562 * 8 7 5 10 10 C 1.36957 * 115.02419 * 180.02562 * 9 8 7 11 11 C 1.39943 * 124.84060 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00469 * 0.02562 * 11 10 9 13 13 C 1.40176 * 119.99603 * 180.02562 * 11 10 9 14 14 N 1.30771 * 119.99831 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99949 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46954 * 60.00015 * 15 13 11 17 17 H 1.48498 * 109.47124 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47024 * 300.00217 * 15 13 11 19 19 S 1.75454 * 110.31431 * 0.02562 * 10 9 8 20 20 C 1.40055 * 119.78852 * 179.72811 * 3 2 1 21 21 H 1.09001 * 109.47103 * 300.00468 * 1 2 3 22 22 H 1.09004 * 109.47054 * 59.99972 * 1 2 3 23 23 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 24 24 H 1.07999 * 119.93342 * 359.97438 * 4 3 2 25 25 H 0.96693 * 114.00192 * 90.00187 * 6 5 4 26 26 H 1.08003 * 119.78981 * 180.02562 * 7 5 4 27 27 H 1.07999 * 122.48464 * 359.97438 * 9 8 7 28 28 H 0.96999 * 119.99163 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2904 2.3662 -0.0005 5 6 1.9157 3.6118 -0.0011 6 8 1.1640 4.7449 -0.0021 7 6 3.2859 3.7022 -0.0006 8 6 4.0842 2.5273 0.0012 9 6 5.4785 2.4249 0.0024 10 6 5.9653 1.1448 0.0035 11 6 7.3231 0.8058 0.0043 12 1 8.0736 1.5823 0.0045 13 6 7.7089 -0.5418 0.0047 14 7 6.8001 -1.4821 0.0049 15 14 9.5213 -0.9944 0.0051 16 1 10.1709 -0.4347 1.2175 17 1 9.6623 -2.4727 0.0062 18 1 10.1713 -0.4355 -1.2075 19 16 4.6439 -0.0095 0.0021 20 6 3.4452 1.2795 0.0058 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.2122 2.3045 -0.0014 25 1 0.9463 5.0732 0.8809 26 1 3.7596 4.6728 -0.0006 27 1 6.1237 3.2909 0.0018 28 1 7.0673 -2.4146 0.0056 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396383418.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:48 Heat of formation + Delta-G solvation = -84.054255 kcal Electronic energy + Delta-G solvation = -15400.399710 eV Core-core repulsion = 12699.412855 eV Total energy + Delta-G solvation = -2700.986855 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.95614 -39.17988 -37.95883 -36.32056 -34.00969 -30.70387 -30.49094 -28.29037 -26.88977 -24.04743 -22.99114 -21.27162 -19.95236 -18.99555 -18.02387 -17.64973 -16.96553 -16.64404 -16.45955 -15.70281 -15.50553 -15.08254 -14.51007 -14.05769 -13.76450 -13.73538 -13.17680 -13.11531 -12.75573 -12.45357 -12.32919 -12.02874 -11.89766 -11.60611 -11.49257 -10.96951 -10.89810 -9.75835 -9.27396 -8.93761 -8.07257 -6.63901 0.24812 0.53854 1.31833 1.36117 1.41728 1.53851 1.82496 1.92180 2.14387 2.47835 2.75310 3.13300 3.43683 4.20331 4.33132 4.37397 4.40945 4.61500 4.70716 4.86815 4.87537 5.07567 5.29207 5.35281 5.48482 5.63662 5.85281 5.91782 6.08445 6.39127 6.50088 6.53717 6.98124 7.92474 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.033988 B = 0.006807 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.624414 B = 4112.462604 C = 4918.396496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.338 6.338 3 C 0.197 3.803 4 C -0.305 4.305 5 C 0.156 3.844 6 O -0.504 6.504 7 C -0.229 4.229 8 C 0.041 3.959 9 C -0.395 4.395 10 C 0.028 3.972 11 C -0.403 4.403 12 H 0.108 0.892 13 C 0.016 3.984 14 N -0.793 5.793 15 Si 1.017 2.983 16 H -0.253 1.253 17 H -0.259 1.259 18 H -0.254 1.254 19 S 0.138 5.862 20 C -0.332 4.332 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.121 0.879 24 H 0.150 0.850 25 H 0.406 0.594 26 H 0.119 0.881 27 H 0.109 0.891 28 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.020 -0.015 1.751 5.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.252 6.252 3 C 0.147 3.853 4 C -0.326 4.326 5 C 0.110 3.890 6 O -0.317 6.317 7 C -0.249 4.249 8 C 0.033 3.967 9 C -0.419 4.419 10 C -0.092 4.092 11 C -0.436 4.436 12 H 0.126 0.874 13 C -0.204 4.204 14 N -0.419 5.419 15 Si 0.834 3.166 16 H -0.177 1.177 17 H -0.182 1.182 18 H -0.178 1.178 19 S 0.398 5.602 20 C -0.447 4.447 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.139 0.861 24 H 0.167 0.833 25 H 0.265 0.735 26 H 0.137 0.863 27 H 0.127 0.873 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.053 -2.051 1.147 5.573 hybrid contribution 0.406 1.739 0.461 1.844 sum -4.647 -0.312 1.608 4.928 Atomic orbital electron populations 1.23322 0.76547 1.05331 1.02171 1.86070 1.23553 1.27108 1.88453 1.18047 0.89001 0.84535 0.93679 1.20918 1.00085 0.90706 1.20933 1.17614 0.88341 0.85386 0.97672 1.84709 1.71711 1.40169 1.35108 1.21025 0.93045 0.96870 1.14003 1.17846 0.92995 0.91636 0.94267 1.19715 0.92557 0.95858 1.33793 1.21900 0.97764 0.94925 0.94626 1.19764 0.91288 0.94443 1.38133 0.87449 1.27393 1.07113 0.94903 0.91007 1.68690 1.38374 1.03905 1.30923 0.84683 0.72735 0.78518 0.80658 1.17682 1.18242 1.17768 1.84673 0.91992 1.04475 1.79089 1.23084 0.96218 1.01185 1.24213 0.91632 0.92023 0.86121 0.83286 0.73532 0.86311 0.87331 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.80 113.37 1.11 1.65 15 2 O -0.34 -13.57 10.46 -93.13 -0.97 -14.55 15 3 C 0.20 8.84 6.71 22.66 0.15 9.00 15 4 C -0.31 -11.95 8.96 22.49 0.20 -11.75 15 5 C 0.16 6.23 6.67 22.33 0.15 6.38 15 6 O -0.50 -16.07 13.49 -93.27 -1.26 -17.33 15 7 C -0.23 -10.35 10.01 23.00 0.23 -10.12 15 8 C 0.04 2.12 5.85 -21.48 -0.13 2.00 15 9 C -0.39 -21.30 10.14 22.35 0.23 -21.07 15 10 C 0.03 1.51 6.11 22.38 0.14 1.65 15 11 C -0.40 -20.33 9.27 23.15 0.21 -20.12 15 12 H 0.11 5.05 7.85 -2.91 -0.02 5.03 15 13 C 0.02 0.71 5.50 85.32 0.47 1.18 15 14 N -0.79 -37.37 10.59 21.87 0.23 -37.14 15 15 Si 1.02 33.30 29.56 68.60 2.03 35.33 15 16 H -0.25 -8.03 7.11 99.48 0.71 -7.32 15 17 H -0.26 -7.86 7.11 99.48 0.71 -7.15 15 18 H -0.25 -8.09 7.11 99.48 0.71 -7.39 15 19 S 0.14 7.33 20.09 -56.49 -1.13 6.19 15 20 C -0.33 -17.19 6.42 23.18 0.15 -17.04 15 21 H 0.07 1.52 7.65 -2.39 -0.02 1.50 15 22 H 0.06 1.48 7.64 -2.38 -0.02 1.47 15 23 H 0.12 2.43 8.14 -2.39 -0.02 2.41 15 24 H 0.15 4.74 6.24 -2.91 -0.02 4.72 15 25 H 0.41 8.34 9.06 -74.06 -0.67 7.67 15 26 H 0.12 4.96 8.06 -2.91 -0.02 4.94 15 27 H 0.11 5.59 8.06 -2.91 -0.02 5.57 15 28 H 0.31 13.01 8.29 -92.71 -0.77 12.24 15 Total: -1.00 -64.41 261.94 2.34 -62.07 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.54 Total: 23.68 kcal Atomic # 6 Polarization: -61.16 SS G_CDS: 2.91 Total: -58.25 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.23 Total: -37.14 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -2.23 Total: -31.88 kcal Atomic # 14 Polarization: 33.30 SS G_CDS: 2.03 Total: 35.33 kcal Atomic # 16 Polarization: 7.33 SS G_CDS: -1.13 Total: 6.19 kcal Total: -64.41 2.34 -62.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396383418.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.987 kcal (2) G-P(sol) polarization free energy of solvation -64.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds