Wall clock time and date at job start Mon Mar 30 2020 05:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35257 * 116.99762 * 2 1 4 4 S 1.75170 * 124.57619 * 358.66464 * 3 2 1 5 5 C 1.75898 * 92.75995 * 179.97438 * 4 3 2 6 6 C 1.39802 * 129.63679 * 180.02562 * 5 4 3 7 7 C 1.37608 * 120.56995 * 180.02562 * 6 5 4 8 8 C 1.39053 * 120.06237 * 359.96806 * 7 6 5 9 9 O 1.35982 * 119.94331 * 180.27794 * 8 7 6 10 10 C 1.37815 * 120.11633 * 0.02562 * 8 7 6 11 11 C 1.39241 * 110.62941 * 0.02562 * 5 4 3 12 12 C 1.37462 * 124.56929 * 178.65023 * 3 2 1 13 13 C 1.40666 * 123.24122 * 0.03637 * 12 3 2 14 14 H 1.08005 * 120.00267 * 144.82912 * 13 12 3 15 15 C 1.39566 * 119.99847 * 324.82506 * 13 12 3 16 16 N 1.31258 * 119.99438 * 156.79069 * 15 13 12 17 17 Si 1.86796 * 120.00330 * 336.78868 * 15 13 12 18 18 H 1.48502 * 109.46932 * 116.30568 * 17 15 13 19 19 H 1.48492 * 109.47397 * 236.31288 * 17 15 13 20 20 H 1.48503 * 109.46984 * 356.31227 * 17 15 13 21 21 H 1.09000 * 109.46811 * 299.99519 * 1 2 3 22 22 H 1.08997 * 109.47524 * 60.00301 * 1 2 3 23 23 H 1.09004 * 109.46982 * 180.02562 * 1 2 3 24 24 H 1.07994 * 119.71692 * 0.02562 * 6 5 4 25 25 H 1.07995 * 119.96575 * 179.97438 * 7 6 5 26 26 H 0.96701 * 114.00467 * 269.73152 * 9 8 7 27 27 H 1.08007 * 119.80237 * 179.97438 * 10 8 7 28 28 H 0.97008 * 119.99682 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0430 1.2052 0.0000 4 16 1.2095 2.7455 -0.0336 5 6 2.7140 3.6564 -0.0112 6 6 2.9196 5.0392 -0.0207 7 6 4.1942 5.5575 0.0003 8 6 5.2923 4.7051 0.0319 9 8 6.5506 5.2198 0.0583 10 6 5.1075 3.3394 0.0418 11 6 3.8082 2.7958 0.0203 12 6 3.4054 1.3864 0.0267 13 6 4.3244 0.3220 0.0566 14 1 5.2671 0.4076 -0.4635 15 6 4.0181 -0.8449 0.7584 16 7 4.6071 -1.9745 0.4423 17 14 2.7702 -0.7990 2.1476 18 1 1.6026 -1.6450 1.7922 19 1 3.3952 -1.3151 3.3918 20 1 2.3205 0.5999 2.3630 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 2.0708 5.7065 -0.0447 25 1 4.3417 6.6273 -0.0078 26 1 6.9371 5.3591 -0.8171 27 1 5.9641 2.6819 0.0660 28 1 4.3940 -2.7856 0.9298 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396383531.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:48 Heat of formation + Delta-G solvation = -36.075424 kcal Electronic energy + Delta-G solvation = -15843.770923 eV Core-core repulsion = 13144.864586 eV Total energy + Delta-G solvation = -2698.906337 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.22897 -37.87316 -36.55240 -34.05265 -32.28733 -29.70384 -28.52963 -26.61227 -25.20140 -22.35324 -21.80832 -19.84506 -17.71627 -17.49659 -17.29042 -15.94788 -15.33255 -15.07882 -14.77125 -14.35822 -13.66008 -13.57096 -13.18411 -12.79093 -12.60948 -12.10675 -11.69495 -11.36082 -11.30262 -11.09961 -10.63147 -10.50278 -9.98198 -9.81811 -9.57775 -9.31481 -9.05266 -8.66109 -7.26886 -6.88661 -6.77763 -4.27547 1.53651 1.68595 2.37087 2.91969 3.03154 3.31212 3.45654 3.50747 4.16348 4.19666 4.50391 4.69526 5.10098 5.33989 5.43456 5.68294 5.71436 5.86738 5.92899 6.00574 6.20457 6.51108 6.62815 6.77244 6.90409 7.21077 7.37871 7.44658 8.02129 8.18728 8.32140 8.60714 8.92021 10.22075 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.024024 B = 0.010153 C = 0.007715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.208919 B = 2757.044395 C = 3628.516385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.267 6.267 3 C -0.166 4.166 4 S -0.011 6.011 5 C -0.136 4.136 6 C -0.078 4.078 7 C -0.147 4.147 8 C 0.084 3.916 9 O -0.500 6.500 10 C -0.098 4.098 11 C -0.021 4.021 12 C 0.048 3.952 13 C -0.428 4.428 14 H 0.090 0.910 15 C 0.099 3.901 16 N -0.810 5.810 17 Si 0.926 3.074 18 H -0.274 1.274 19 H -0.301 1.301 20 H -0.252 1.252 21 H 0.041 0.959 22 H 0.047 0.953 23 H 0.088 0.912 24 H 0.119 0.881 25 H 0.124 0.876 26 H 0.382 0.618 27 H 0.132 0.868 28 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.865 8.774 -1.016 9.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.183 6.183 3 C -0.323 4.323 4 S 0.247 5.753 5 C -0.251 4.251 6 C -0.101 4.101 7 C -0.168 4.168 8 C 0.037 3.963 9 O -0.309 6.309 10 C -0.118 4.118 11 C -0.030 4.030 12 C 0.039 3.961 13 C -0.459 4.459 14 H 0.108 0.892 15 C -0.120 4.120 16 N -0.436 5.436 17 Si 0.755 3.245 18 H -0.200 1.200 19 H -0.230 1.230 20 H -0.176 1.176 21 H 0.060 0.940 22 H 0.065 0.935 23 H 0.107 0.893 24 H 0.137 0.863 25 H 0.142 0.858 26 H 0.236 0.764 27 H 0.150 0.850 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.310 8.598 -0.446 10.116 hybrid contribution 0.688 -0.431 0.135 0.823 sum -4.622 8.168 -0.311 9.390 Atomic orbital electron populations 1.22860 0.81116 1.02592 1.00393 1.85569 1.18024 1.23747 1.90956 1.22141 0.93092 0.84829 1.32265 1.83036 1.07964 0.99704 1.84553 1.22171 0.96593 0.96654 1.09676 1.20211 0.96572 0.91897 1.01431 1.20977 0.91714 0.99294 1.04817 1.18034 0.83866 0.90662 1.03783 1.84854 1.27668 1.85039 1.33343 1.21196 0.96655 0.93804 1.00162 1.19172 0.91834 0.93050 0.98929 1.16975 0.89342 0.90248 0.99577 1.18538 1.03285 0.95775 1.28278 0.89237 1.25931 0.94954 0.93685 0.97389 1.69922 1.38746 0.99574 1.35340 0.85696 0.79957 0.80760 0.78090 1.20043 1.23016 1.17633 0.94035 0.93455 0.89306 0.86257 0.85772 0.76396 0.85013 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.18 101.05 1.03 1.54 15 2 O -0.27 -6.43 5.94 -17.46 -0.10 -6.54 15 3 C -0.17 -4.08 5.29 30.45 0.16 -3.92 15 4 S -0.01 -0.23 21.84 -107.50 -2.35 -2.58 15 5 C -0.14 -2.82 6.41 -38.62 -0.25 -3.07 15 6 C -0.08 -1.33 10.05 -39.23 -0.39 -1.72 15 7 C -0.15 -2.35 9.97 -39.51 -0.39 -2.75 15 8 C 0.08 1.45 6.68 -39.43 -0.26 1.19 15 9 O -0.50 -7.44 13.50 -19.68 -0.27 -7.71 15 10 C -0.10 -2.00 9.75 -38.75 -0.38 -2.37 15 11 C -0.02 -0.48 6.00 -105.17 -0.63 -1.11 15 12 C 0.05 1.24 4.92 -105.90 -0.52 0.72 15 13 C -0.43 -11.84 9.39 -38.17 -0.36 -12.19 15 14 H 0.09 2.54 8.06 -52.48 -0.42 2.12 15 15 C 0.10 2.72 5.09 -17.30 -0.09 2.63 15 16 N -0.81 -22.53 13.95 55.53 0.77 -21.76 15 17 Si 0.93 22.91 24.17 -169.99 -4.11 18.80 15 18 H -0.27 -6.56 7.00 56.52 0.40 -6.17 15 19 H -0.30 -7.26 7.11 56.52 0.40 -6.85 15 20 H -0.25 -6.44 6.23 56.52 0.35 -6.09 15 21 H 0.04 0.72 8.04 -51.93 -0.42 0.31 15 22 H 0.05 0.79 7.99 -51.93 -0.42 0.38 15 23 H 0.09 1.42 8.14 -51.93 -0.42 1.00 15 24 H 0.12 1.70 8.06 -52.49 -0.42 1.28 15 25 H 0.12 1.60 8.06 -52.49 -0.42 1.18 15 26 H 0.38 3.69 9.06 45.56 0.41 4.11 15 27 H 0.13 2.66 8.03 -52.48 -0.42 2.24 15 28 H 0.28 7.16 8.31 -40.82 -0.34 6.82 15 LS Contribution 257.21 15.07 3.88 3.88 Total: -1.00 -30.65 257.21 -5.98 -36.64 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -1.72 Total: 0.31 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -2.09 Total: -21.05 kcal Atomic # 7 Polarization: -22.53 SS G_CDS: 0.77 Total: -21.76 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.37 Total: -14.24 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.11 Total: 18.80 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -2.35 Total: -2.58 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.65 -5.98 -36.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396383531.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.563 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds