Wall clock time and date at job start Mon Mar 30 2020 05:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35257 * 116.99762 * 2 1 4 4 S 1.75170 * 124.57619 * 358.66464 * 3 2 1 5 5 C 1.75898 * 92.75995 * 179.97438 * 4 3 2 6 6 C 1.39802 * 129.63679 * 180.02562 * 5 4 3 7 7 C 1.37608 * 120.56995 * 180.02562 * 6 5 4 8 8 C 1.39053 * 120.06237 * 359.96806 * 7 6 5 9 9 O 1.35982 * 119.94331 * 180.27794 * 8 7 6 10 10 C 1.37815 * 120.11633 * 0.02562 * 8 7 6 11 11 C 1.39241 * 110.62941 * 0.02562 * 5 4 3 12 12 C 1.37462 * 124.56929 * 178.65023 * 3 2 1 13 13 C 1.40666 * 123.24122 * 0.03637 * 12 3 2 14 14 H 1.08005 * 120.00267 * 144.82912 * 13 12 3 15 15 C 1.39566 * 119.99847 * 324.82506 * 13 12 3 16 16 N 1.31258 * 119.99438 * 156.79069 * 15 13 12 17 17 Si 1.86796 * 120.00330 * 336.78868 * 15 13 12 18 18 H 1.48502 * 109.46932 * 116.30568 * 17 15 13 19 19 H 1.48492 * 109.47397 * 236.31288 * 17 15 13 20 20 H 1.48503 * 109.46984 * 356.31227 * 17 15 13 21 21 H 1.09000 * 109.46811 * 299.99519 * 1 2 3 22 22 H 1.08997 * 109.47524 * 60.00301 * 1 2 3 23 23 H 1.09004 * 109.46982 * 180.02562 * 1 2 3 24 24 H 1.07994 * 119.71692 * 0.02562 * 6 5 4 25 25 H 1.07995 * 119.96575 * 179.97438 * 7 6 5 26 26 H 0.96701 * 114.00467 * 269.73152 * 9 8 7 27 27 H 1.08007 * 119.80237 * 179.97438 * 10 8 7 28 28 H 0.97008 * 119.99682 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0430 1.2052 0.0000 4 16 1.2095 2.7455 -0.0336 5 6 2.7140 3.6564 -0.0112 6 6 2.9196 5.0392 -0.0207 7 6 4.1942 5.5575 0.0003 8 6 5.2923 4.7051 0.0319 9 8 6.5506 5.2198 0.0583 10 6 5.1075 3.3394 0.0418 11 6 3.8082 2.7958 0.0203 12 6 3.4054 1.3864 0.0267 13 6 4.3244 0.3220 0.0566 14 1 5.2671 0.4076 -0.4635 15 6 4.0181 -0.8449 0.7584 16 7 4.6071 -1.9745 0.4423 17 14 2.7702 -0.7990 2.1476 18 1 1.6026 -1.6450 1.7922 19 1 3.3952 -1.3151 3.3918 20 1 2.3205 0.5999 2.3630 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 2.0708 5.7065 -0.0447 25 1 4.3417 6.6273 -0.0078 26 1 6.9371 5.3591 -0.8171 27 1 5.9641 2.6819 0.0660 28 1 4.3940 -2.7856 0.9298 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396383531.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:48 Heat of formation + Delta-G solvation = -58.204455 kcal Electronic energy + Delta-G solvation = -15844.730510 eV Core-core repulsion = 13144.864586 eV Total energy + Delta-G solvation = -2699.865924 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.69619 -39.61185 -37.97531 -35.82317 -34.08392 -31.17464 -30.15707 -28.25337 -26.94641 -23.92126 -23.33038 -21.55828 -19.37670 -19.18090 -18.88399 -17.52681 -17.07413 -16.54344 -16.32917 -16.07240 -15.24370 -15.12964 -14.95869 -14.41185 -14.17819 -13.72762 -13.32930 -12.99507 -12.87295 -12.77457 -12.39771 -12.22087 -11.71338 -11.39363 -11.31886 -10.97276 -10.91431 -10.27817 -8.87690 -8.78836 -8.60710 -6.28448 -0.01658 0.23559 0.72969 1.13621 1.17484 1.31035 1.50446 1.66351 2.25139 2.60515 2.82028 3.12495 3.36577 3.95831 4.10420 4.27396 4.31617 4.40351 4.51672 4.57393 4.80173 5.01521 5.17561 5.25027 5.42569 5.52821 5.55233 5.84137 6.23500 6.39035 6.69878 6.92061 6.92921 8.27135 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.024024 B = 0.010153 C = 0.007715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.208919 B = 2757.044395 C = 3628.516385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.298 6.298 3 C -0.159 4.159 4 S 0.040 5.960 5 C -0.158 4.158 6 C -0.067 4.067 7 C -0.130 4.130 8 C 0.104 3.896 9 O -0.503 6.503 10 C -0.126 4.126 11 C -0.055 4.055 12 C 0.014 3.986 13 C -0.462 4.462 14 H 0.056 0.944 15 C 0.064 3.936 16 N -0.856 5.856 17 Si 0.973 3.027 18 H -0.261 1.261 19 H -0.295 1.295 20 H -0.265 1.265 21 H 0.053 0.947 22 H 0.065 0.935 23 H 0.113 0.887 24 H 0.159 0.841 25 H 0.170 0.830 26 H 0.409 0.591 27 H 0.114 0.886 28 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.768 12.083 -0.773 13.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.215 6.215 3 C -0.317 4.317 4 S 0.299 5.701 5 C -0.272 4.272 6 C -0.090 4.090 7 C -0.150 4.150 8 C 0.057 3.943 9 O -0.315 6.315 10 C -0.146 4.146 11 C -0.064 4.064 12 C 0.005 3.995 13 C -0.495 4.495 14 H 0.074 0.926 15 C -0.149 4.149 16 N -0.485 5.485 17 Si 0.801 3.199 18 H -0.187 1.187 19 H -0.224 1.224 20 H -0.190 1.190 21 H 0.072 0.928 22 H 0.083 0.917 23 H 0.131 0.869 24 H 0.176 0.824 25 H 0.187 0.813 26 H 0.268 0.732 27 H 0.132 0.868 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.209 11.922 -0.226 13.933 hybrid contribution 1.262 -1.170 -0.044 1.722 sum -5.946 10.751 -0.270 12.289 Atomic orbital electron populations 1.23251 0.78233 1.04826 1.01799 1.85527 1.21129 1.24159 1.90660 1.22696 0.93909 0.86950 1.28097 1.82653 1.06831 0.96296 1.84357 1.22505 0.95812 0.98180 1.10752 1.20687 0.98499 0.90525 0.99271 1.21440 0.90377 1.01212 1.01989 1.18099 0.85474 0.89499 1.01223 1.84784 1.26696 1.84387 1.35673 1.21231 0.95501 0.95422 1.02491 1.19174 0.93643 0.92107 1.01472 1.17305 0.90026 0.91543 1.00666 1.18489 1.03112 0.97565 1.30297 0.92616 1.26497 0.96407 0.93348 0.98693 1.69955 1.41220 1.00158 1.37148 0.85020 0.78759 0.79882 0.76276 1.18675 1.22442 1.19008 0.92806 0.91681 0.86889 0.82352 0.81251 0.73246 0.86836 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.51 10.18 113.37 1.15 1.67 15 2 O -0.30 -14.22 5.94 -85.40 -0.51 -14.73 15 3 C -0.16 -7.79 5.29 67.64 0.36 -7.43 15 4 S 0.04 1.57 21.84 -56.49 -1.23 0.33 15 5 C -0.16 -6.19 6.41 22.89 0.15 -6.04 15 6 C -0.07 -1.97 10.05 22.50 0.23 -1.75 15 7 C -0.13 -3.48 9.97 22.32 0.22 -3.26 15 8 C 0.10 3.35 6.68 22.37 0.15 3.50 15 9 O -0.50 -13.35 13.50 -93.35 -1.26 -14.61 15 10 C -0.13 -5.20 9.75 22.81 0.22 -4.97 15 11 C -0.06 -2.56 6.00 -20.22 -0.12 -2.68 15 12 C 0.01 0.77 4.92 -20.69 -0.10 0.67 15 13 C -0.46 -27.36 9.39 23.18 0.22 -27.14 15 14 H 0.06 3.50 8.06 -2.91 -0.02 3.48 15 15 C 0.06 3.69 5.09 85.10 0.43 4.12 15 16 N -0.86 -50.37 13.95 21.78 0.30 -50.06 15 17 Si 0.97 48.36 24.17 68.60 1.66 50.02 15 18 H -0.26 -12.19 7.00 99.48 0.70 -11.49 15 19 H -0.30 -14.11 7.11 99.48 0.71 -13.41 15 20 H -0.27 -13.51 6.23 99.48 0.62 -12.89 15 21 H 0.05 1.73 8.04 -2.39 -0.02 1.71 15 22 H 0.06 2.01 7.99 -2.39 -0.02 1.99 15 23 H 0.11 3.32 8.14 -2.38 -0.02 3.30 15 24 H 0.16 3.48 8.06 -2.91 -0.02 3.46 15 25 H 0.17 3.13 8.06 -2.91 -0.02 3.10 15 26 H 0.41 6.47 9.06 -74.06 -0.67 5.80 15 27 H 0.11 4.93 8.03 -2.91 -0.02 4.90 15 28 H 0.29 15.34 8.31 -92.70 -0.77 14.57 15 Total: -1.00 -70.14 257.21 2.30 -67.84 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 0.43 Total: 4.53 kcal Atomic # 6 Polarization: -46.23 SS G_CDS: 2.91 Total: -43.32 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.30 Total: -50.06 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -1.77 Total: -29.34 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 1.66 Total: 50.02 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -1.23 Total: 0.33 kcal Total: -70.14 2.30 -67.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396383531.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.636 kcal (2) G-P(sol) polarization free energy of solvation -70.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds