Wall clock time and date at job start Mon Mar 30 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35804 * 117.00208 * 2 1 4 4 C 1.37525 * 119.84436 * 0.02562 * 3 2 1 5 5 C 1.38770 * 120.46608 * 179.72397 * 4 3 2 6 6 C 1.38194 * 120.25204 * 359.96947 * 5 4 3 7 7 O 1.36058 * 119.75963 * 180.02562 * 6 5 4 8 8 C 1.39875 * 120.48313 * 0.02562 * 6 5 4 9 9 S 1.76014 * 130.15691 * 179.97438 * 8 6 5 10 10 C 1.75468 * 91.76521 * 180.02562 * 9 8 6 11 11 C 1.39924 * 124.84948 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99576 * 180.02562 * 11 10 9 13 13 C 1.40080 * 120.00121 * 0.03262 * 11 10 9 14 14 N 1.30825 * 120.00166 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99894 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47013 * 89.99280 * 15 13 11 17 17 H 1.48494 * 109.47009 * 209.99498 * 15 13 11 18 18 H 1.48504 * 109.46897 * 329.99534 * 15 13 11 19 19 C 1.37016 * 110.29315 * 359.97438 * 10 9 8 20 20 C 1.39650 * 115.03305 * 0.02562 * 19 10 9 21 21 H 1.08994 * 109.47500 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46887 * 300.00058 * 1 2 3 23 23 H 1.09001 * 109.47218 * 59.99738 * 1 2 3 24 24 H 1.08000 * 119.76510 * 359.74250 * 4 3 2 25 25 H 1.08002 * 119.87794 * 180.02562 * 5 4 3 26 26 H 0.96697 * 113.99461 * 90.00508 * 7 6 5 27 27 H 0.97006 * 119.99557 * 180.02562 * 14 13 11 28 28 H 1.08002 * 122.48048 * 179.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.2935 2.3614 0.0005 5 6 1.9100 3.6045 0.0063 6 6 3.2888 3.6978 0.0122 7 8 3.8828 4.9219 0.0184 8 6 4.0782 2.5431 0.0119 9 16 5.8293 2.3651 0.0179 10 6 5.7057 0.6148 0.0118 11 6 6.7949 -0.2636 0.0125 12 1 6.6280 -1.3306 0.0081 13 6 8.1017 0.2410 0.0192 14 7 8.3038 1.5335 0.0242 15 14 9.5557 -0.9318 0.0209 16 1 9.9462 -1.2381 -1.3787 17 1 10.6995 -0.3011 0.7273 18 1 9.1770 -2.1886 0.7155 19 6 4.3904 0.2313 0.0062 20 6 3.4689 1.2806 0.0060 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 0.2153 2.2975 -0.0033 25 1 1.3101 4.5026 0.0071 26 1 4.0510 5.2729 0.9035 27 1 9.2088 1.8828 0.0285 28 1 4.0886 -0.8057 0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396383564.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:09 Heat of formation + Delta-G solvation = -82.087374 kcal Electronic energy + Delta-G solvation = -15486.477643 eV Core-core repulsion = 12785.576078 eV Total energy + Delta-G solvation = -2700.901565 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.92356 -39.10566 -37.61290 -36.24218 -34.57123 -30.97388 -29.82643 -28.12617 -27.00988 -24.09750 -22.88269 -21.23910 -20.03939 -18.81722 -18.57938 -17.47290 -16.80891 -16.52268 -16.20351 -15.93185 -15.32035 -15.03912 -14.52567 -13.99690 -13.78831 -13.51690 -13.17577 -13.10018 -12.98103 -12.28366 -12.23307 -12.18183 -11.96260 -11.61510 -11.37170 -11.05553 -10.96814 -9.73913 -9.18460 -8.92893 -8.10089 -6.53676 0.24214 0.53835 1.28152 1.34592 1.38683 1.53958 1.80601 1.84719 2.13412 2.65253 2.76967 3.13723 3.53699 4.13644 4.18765 4.43893 4.45093 4.71973 4.74355 4.84394 4.90351 4.97475 5.38858 5.42819 5.57094 5.66188 5.79390 5.87451 6.05424 6.35667 6.52865 6.73600 6.99699 7.95503 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.028255 B = 0.007480 C = 0.005936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.719926 B = 3742.654485 C = 4715.671877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.074 3.926 4 C -0.183 4.183 5 C -0.170 4.170 6 C 0.118 3.882 7 O -0.506 6.506 8 C -0.292 4.292 9 S 0.154 5.846 10 C 0.016 3.984 11 C -0.413 4.413 12 H 0.100 0.900 13 C 0.017 3.983 14 N -0.801 5.801 15 Si 1.015 2.985 16 H -0.257 1.257 17 H -0.257 1.257 18 H -0.254 1.254 19 C -0.377 4.377 20 C -0.017 4.017 21 H 0.115 0.885 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.156 0.844 25 H 0.150 0.850 26 H 0.397 0.603 27 H 0.313 0.687 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.451 1.095 1.710 5.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.028 3.972 4 C -0.204 4.204 5 C -0.191 4.191 6 C 0.069 3.931 7 O -0.317 6.317 8 C -0.408 4.408 9 S 0.414 5.586 10 C -0.103 4.103 11 C -0.447 4.447 12 H 0.118 0.882 13 C -0.201 4.201 14 N -0.428 5.428 15 Si 0.833 3.167 16 H -0.181 1.181 17 H -0.181 1.181 18 H -0.178 1.178 19 C -0.402 4.402 20 C -0.025 4.025 21 H 0.133 0.867 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.173 0.827 25 H 0.167 0.833 26 H 0.253 0.747 27 H 0.127 0.873 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.023 2.011 1.117 4.634 hybrid contribution -0.846 -1.276 0.446 1.595 sum -4.869 0.735 1.562 5.166 Atomic orbital electron populations 1.23279 0.77067 1.05060 1.02009 1.85981 1.22962 1.27395 1.89308 1.19135 0.90047 0.85068 1.02965 1.20828 1.00193 0.90738 1.08674 1.20839 0.92169 0.98091 1.07956 1.17724 0.90248 0.82237 1.02867 1.84757 1.81717 1.30866 1.34351 1.24045 1.03109 0.95770 1.17838 1.84587 0.93709 1.01979 1.78303 1.21848 0.96086 0.96560 0.95794 1.19630 0.90005 0.95535 1.39484 0.88167 1.27294 1.03888 0.97943 0.91009 1.68645 1.27028 1.14763 1.32351 0.84665 0.74359 0.77645 0.80047 1.18111 1.18060 1.17757 1.19577 0.91066 0.97152 1.32405 1.17523 0.91129 0.92582 1.01297 0.86666 0.91798 0.91957 0.82689 0.83254 0.74656 0.87294 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.80 113.37 1.11 1.64 15 2 O -0.34 -13.90 10.35 -91.35 -0.95 -14.84 15 3 C 0.07 3.31 6.78 23.17 0.16 3.47 15 4 C -0.18 -6.77 8.99 22.23 0.20 -6.57 15 5 C -0.17 -6.32 9.96 22.39 0.22 -6.10 15 6 C 0.12 5.11 6.72 22.66 0.15 5.27 15 7 O -0.51 -19.24 13.46 -94.20 -1.27 -20.51 15 8 C -0.29 -14.82 6.41 23.14 0.15 -14.67 15 9 S 0.15 8.04 20.09 -56.49 -1.13 6.91 15 10 C 0.02 0.92 6.12 22.39 0.14 1.05 15 11 C -0.41 -21.57 9.26 23.13 0.21 -21.36 15 12 H 0.10 4.99 7.85 -2.91 -0.02 4.97 15 13 C 0.02 0.79 5.50 85.29 0.47 1.26 15 14 N -0.80 -38.21 10.59 21.86 0.23 -37.98 15 15 Si 1.02 34.48 29.56 68.60 2.03 36.50 15 16 H -0.26 -8.43 7.11 99.48 0.71 -7.73 15 17 H -0.26 -8.07 7.11 99.48 0.71 -7.36 15 18 H -0.25 -8.46 7.11 99.48 0.71 -7.76 15 19 C -0.38 -21.14 9.98 22.32 0.22 -20.92 15 20 C -0.02 -0.88 5.86 -21.40 -0.13 -1.01 15 21 H 0.12 2.34 8.14 -2.39 -0.02 2.32 15 22 H 0.06 1.44 7.64 -2.39 -0.02 1.42 15 23 H 0.06 1.42 7.64 -2.39 -0.02 1.41 15 24 H 0.16 4.34 6.21 -2.91 -0.02 4.32 15 25 H 0.15 4.42 8.06 -2.91 -0.02 4.40 15 26 H 0.40 11.14 9.06 -74.06 -0.67 10.47 15 27 H 0.31 13.10 8.30 -92.70 -0.77 12.33 15 28 H 0.10 5.47 8.06 -2.91 -0.02 5.45 15 Total: -1.00 -65.98 261.71 2.36 -63.63 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.54 Total: 24.23 kcal Atomic # 6 Polarization: -60.84 SS G_CDS: 2.91 Total: -57.93 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.23 Total: -37.98 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -2.21 Total: -35.35 kcal Atomic # 14 Polarization: 34.48 SS G_CDS: 2.03 Total: 36.50 kcal Atomic # 16 Polarization: 8.04 SS G_CDS: -1.13 Total: 6.91 kcal Total: -65.98 2.36 -63.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396383564.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.462 kcal (2) G-P(sol) polarization free energy of solvation -65.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds