Wall clock time and date at job start Mon Mar 30 2020 05:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35739 * 117.00018 * 2 1 4 4 C 1.37718 * 119.87207 * 0.02562 * 3 2 1 5 5 C 1.38644 * 120.37451 * 179.97438 * 4 3 2 6 6 C 1.37828 * 120.27734 * 0.02673 * 5 4 3 7 7 C 1.39553 * 120.59307 * 359.95159 * 6 5 4 8 8 S 1.76001 * 130.03538 * 180.33845 * 7 6 5 9 9 C 1.75430 * 91.90009 * 180.02562 * 8 7 6 10 10 C 1.39675 * 124.85203 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99756 * 179.69494 * 10 9 8 12 12 C 1.39966 * 120.00304 * 359.41786 * 10 9 8 13 13 N 1.30967 * 119.99821 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99965 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47213 * 90.00309 * 14 12 10 16 16 H 1.48504 * 109.47159 * 209.99968 * 14 12 10 17 17 H 1.48494 * 109.47271 * 329.99856 * 14 12 10 18 18 C 1.37666 * 110.28993 * 359.67918 * 9 8 7 19 19 O 1.35630 * 122.61926 * 180.22239 * 18 9 8 20 20 C 1.40114 * 119.86559 * 0.04814 * 7 6 5 21 21 H 1.09004 * 109.46996 * 60.00222 * 1 2 3 22 22 H 1.08999 * 109.46930 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47197 * 300.00266 * 1 2 3 24 24 H 1.08003 * 119.81501 * 0.02562 * 4 3 2 25 25 H 1.07999 * 119.86086 * 180.02562 * 5 4 3 26 26 H 1.08005 * 119.70536 * 179.97438 * 6 5 4 27 27 H 0.97000 * 119.99445 * 179.97438 * 13 12 10 28 28 H 0.96704 * 114.00053 * 90.02564 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.2926 2.3628 0.0005 5 6 1.9112 3.6036 0.0011 6 6 3.2865 3.6944 0.0005 7 6 4.0744 2.5426 0.0004 8 16 5.8258 2.3689 0.0078 9 6 5.7107 0.6184 0.0009 10 6 6.8020 -0.2533 0.0022 11 1 6.6402 -1.3212 0.0027 12 6 8.1054 0.2570 -0.0029 13 7 8.3016 1.5519 -0.0084 14 14 9.5649 -0.9089 -0.0004 15 1 9.9488 -1.2244 -1.3998 16 1 10.7099 -0.2672 0.6942 17 1 9.1964 -2.1618 0.7063 18 6 4.3909 0.2268 0.0008 19 8 4.0150 -1.0764 0.0005 20 6 3.4654 1.2807 -0.0001 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.2144 2.3004 0.0014 25 1 1.3129 4.5027 0.0019 26 1 3.7587 4.6658 0.0005 27 1 9.2048 1.9055 -0.0116 28 1 3.9055 -1.4544 0.8838 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396383866.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:11 Heat of formation + Delta-G solvation = -60.971438 kcal Electronic energy + Delta-G solvation = -15705.599702 eV Core-core repulsion = 13005.613793 eV Total energy + Delta-G solvation = -2699.985909 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.22099 -37.06198 -35.85582 -34.30404 -32.06336 -29.20471 -28.96928 -26.87090 -25.01406 -22.20889 -21.16314 -19.49741 -18.23762 -17.00249 -16.14549 -15.61526 -15.16734 -14.98979 -14.85157 -14.10263 -13.68455 -13.49175 -12.57086 -12.51600 -11.98265 -11.87030 -11.81348 -11.65259 -11.05483 -10.74583 -10.68343 -10.59696 -10.25680 -10.15606 -9.37911 -9.27014 -8.87690 -7.93041 -7.40513 -7.21522 -6.29323 -4.58159 2.03303 2.32470 2.79742 2.85051 2.91815 3.17445 3.43082 3.55374 3.71710 4.16713 4.59020 4.89913 5.47063 5.55298 5.66161 5.79735 5.84035 5.95749 6.22010 6.41880 6.65610 6.73876 6.91931 7.10960 7.36993 7.48497 7.56427 7.64768 7.88652 8.07395 8.31387 8.45497 9.27737 9.62654 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.033521 B = 0.007658 C = 0.006259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.084425 B = 3655.418943 C = 4472.779177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.305 6.305 3 C 0.103 3.897 4 C -0.210 4.210 5 C -0.155 4.155 6 C -0.087 4.087 7 C -0.239 4.239 8 S 0.170 5.830 9 C 0.020 3.980 10 C -0.366 4.366 11 H 0.103 0.897 12 C 0.050 3.950 13 N -0.779 5.779 14 Si 0.942 3.058 15 H -0.263 1.263 16 H -0.271 1.271 17 H -0.256 1.256 18 C -0.142 4.142 19 O -0.461 6.461 20 C -0.018 4.018 21 H 0.045 0.955 22 H 0.088 0.912 23 H 0.044 0.956 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.302 0.698 28 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.970 0.523 1.441 4.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.218 6.218 3 C 0.057 3.943 4 C -0.231 4.231 5 C -0.176 4.176 6 C -0.109 4.109 7 C -0.354 4.354 8 S 0.430 5.570 9 C -0.100 4.100 10 C -0.400 4.400 11 H 0.121 0.879 12 C -0.171 4.171 13 N -0.406 5.406 14 Si 0.765 3.235 15 H -0.188 1.188 16 H -0.196 1.196 17 H -0.180 1.180 18 C -0.193 4.193 19 O -0.265 6.265 20 C -0.027 4.027 21 H 0.063 0.937 22 H 0.107 0.893 23 H 0.063 0.937 24 H 0.127 0.873 25 H 0.124 0.876 26 H 0.123 0.877 27 H 0.115 0.885 28 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.472 1.542 0.815 3.025 hybrid contribution -0.975 -1.244 0.510 1.660 sum -3.446 0.298 1.325 3.704 Atomic orbital electron populations 1.22866 0.80784 1.02524 1.00338 1.86118 1.19064 1.27566 1.89057 1.18919 0.90592 0.83494 1.01309 1.20553 0.98145 0.92563 1.11885 1.20231 0.93850 0.95809 1.07724 1.20079 0.92790 0.95554 1.02499 1.23255 1.03013 0.94897 1.14194 1.84799 0.92623 1.01567 1.77982 1.21692 0.95354 0.96006 0.96934 1.19203 0.88610 0.95777 1.36364 0.87922 1.26351 1.02026 0.96242 0.92482 1.68657 1.25809 1.13031 1.33053 0.85699 0.77955 0.80051 0.79829 1.18759 1.19606 1.17956 1.16760 0.88546 0.83056 1.30962 1.84903 1.89840 1.22089 1.29715 1.17508 0.89591 0.93436 1.02140 0.93650 0.89348 0.93696 0.87269 0.87556 0.87731 0.88489 0.81705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.80 101.05 0.99 1.46 15 2 O -0.30 -6.50 9.59 -30.44 -0.29 -6.79 15 3 C 0.10 2.38 6.77 -38.26 -0.26 2.12 15 4 C -0.21 -4.23 9.00 -39.62 -0.36 -4.59 15 5 C -0.16 -3.05 10.03 -39.58 -0.40 -3.45 15 6 C -0.09 -1.85 10.05 -39.24 -0.39 -2.25 15 7 C -0.24 -5.83 6.45 -38.39 -0.25 -6.07 15 8 S 0.17 4.18 20.10 -107.50 -2.16 2.02 15 9 C 0.02 0.54 6.13 -39.25 -0.24 0.30 15 10 C -0.37 -9.23 9.08 -38.40 -0.35 -9.58 15 11 H 0.10 2.52 7.71 -52.48 -0.40 2.12 15 12 C 0.05 1.14 5.50 -17.27 -0.09 1.04 15 13 N -0.78 -18.07 10.58 55.55 0.59 -17.48 15 14 Si 0.94 17.11 29.56 -169.99 -5.03 12.08 15 15 H -0.26 -4.75 7.11 56.52 0.40 -4.35 15 16 H -0.27 -4.74 7.11 56.52 0.40 -4.34 15 17 H -0.26 -4.62 7.11 56.52 0.40 -4.22 15 18 C -0.14 -3.80 6.84 -39.03 -0.27 -4.07 15 19 O -0.46 -11.66 12.33 -30.10 -0.37 -12.03 15 20 C -0.02 -0.46 5.87 -106.92 -0.63 -1.09 15 21 H 0.04 0.63 7.64 -51.93 -0.40 0.24 15 22 H 0.09 1.09 8.14 -51.93 -0.42 0.67 15 23 H 0.04 0.61 7.64 -51.93 -0.40 0.21 15 24 H 0.11 1.84 6.22 -52.48 -0.33 1.51 15 25 H 0.11 1.73 8.06 -52.49 -0.42 1.30 15 26 H 0.10 1.97 8.06 -52.48 -0.42 1.55 15 27 H 0.30 6.23 8.30 -40.82 -0.34 5.89 15 28 H 0.33 7.19 9.06 45.56 0.41 7.60 15 LS Contribution 259.83 15.07 3.92 3.92 Total: -1.00 -29.18 259.83 -7.10 -36.28 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -1.51 Total: 8.19 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: -2.24 Total: -26.18 kcal Atomic # 7 Polarization: -18.07 SS G_CDS: 0.59 Total: -17.48 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.66 Total: -18.82 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.03 Total: 12.08 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -2.16 Total: 2.02 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.18 -7.10 -36.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396383866.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.693 kcal (2) G-P(sol) polarization free energy of solvation -29.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds