Wall clock time and date at job start Mon Mar 30 2020 05:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35739 * 117.00018 * 2 1 4 4 C 1.37718 * 119.87207 * 0.02562 * 3 2 1 5 5 C 1.38644 * 120.37451 * 179.97438 * 4 3 2 6 6 C 1.37828 * 120.27734 * 0.02673 * 5 4 3 7 7 C 1.39553 * 120.59307 * 359.95159 * 6 5 4 8 8 S 1.76001 * 130.03538 * 180.33845 * 7 6 5 9 9 C 1.75430 * 91.90009 * 180.02562 * 8 7 6 10 10 C 1.39675 * 124.85203 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99756 * 179.69494 * 10 9 8 12 12 C 1.39966 * 120.00304 * 359.41786 * 10 9 8 13 13 N 1.30967 * 119.99821 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99965 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47213 * 90.00309 * 14 12 10 16 16 H 1.48504 * 109.47159 * 209.99968 * 14 12 10 17 17 H 1.48494 * 109.47271 * 329.99856 * 14 12 10 18 18 C 1.37666 * 110.28993 * 359.67918 * 9 8 7 19 19 O 1.35630 * 122.61926 * 180.22239 * 18 9 8 20 20 C 1.40114 * 119.86559 * 0.04814 * 7 6 5 21 21 H 1.09004 * 109.46996 * 60.00222 * 1 2 3 22 22 H 1.08999 * 109.46930 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47197 * 300.00266 * 1 2 3 24 24 H 1.08003 * 119.81501 * 0.02562 * 4 3 2 25 25 H 1.07999 * 119.86086 * 180.02562 * 5 4 3 26 26 H 1.08005 * 119.70536 * 179.97438 * 6 5 4 27 27 H 0.97000 * 119.99445 * 179.97438 * 13 12 10 28 28 H 0.96704 * 114.00053 * 90.02564 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.2926 2.3628 0.0005 5 6 1.9112 3.6036 0.0011 6 6 3.2865 3.6944 0.0005 7 6 4.0744 2.5426 0.0004 8 16 5.8258 2.3689 0.0078 9 6 5.7107 0.6184 0.0009 10 6 6.8020 -0.2533 0.0022 11 1 6.6402 -1.3212 0.0027 12 6 8.1054 0.2570 -0.0029 13 7 8.3016 1.5519 -0.0084 14 14 9.5649 -0.9089 -0.0004 15 1 9.9488 -1.2244 -1.3998 16 1 10.7099 -0.2672 0.6942 17 1 9.1964 -2.1618 0.7063 18 6 4.3909 0.2268 0.0008 19 8 4.0150 -1.0764 0.0005 20 6 3.4654 1.2807 -0.0001 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.2144 2.3004 0.0014 25 1 1.3129 4.5027 0.0019 26 1 3.7587 4.6658 0.0005 27 1 9.2048 1.9055 -0.0116 28 1 3.9055 -1.4544 0.8838 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396383866.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:11 Heat of formation + Delta-G solvation = -79.791316 kcal Electronic energy + Delta-G solvation = -15706.415793 eV Core-core repulsion = 13005.613793 eV Total energy + Delta-G solvation = -2700.802000 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.85887 -38.78894 -37.58152 -36.11025 -33.84917 -30.95739 -30.60497 -28.24784 -26.75290 -23.94179 -22.82884 -21.30621 -19.99504 -18.68402 -17.96741 -17.26884 -16.84937 -16.50358 -16.41999 -15.78127 -15.32171 -15.15525 -14.22950 -14.11973 -13.69715 -13.52959 -13.42450 -13.19866 -12.63921 -12.24986 -12.15698 -12.15017 -11.94263 -11.73951 -11.18249 -10.98395 -10.76552 -9.67204 -9.20282 -8.94227 -8.10909 -6.45228 0.29835 0.62358 1.26231 1.33027 1.36171 1.52443 1.74316 1.80633 2.12691 2.70055 2.82693 3.12140 4.15116 4.16928 4.22408 4.40749 4.43702 4.58539 4.71745 4.83966 4.90318 5.03611 5.17990 5.42665 5.66979 5.73241 5.78647 6.04515 6.05546 6.23826 6.52126 6.83002 7.41439 7.93630 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.033521 B = 0.007658 C = 0.006259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.084425 B = 3655.418943 C = 4472.779177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.333 6.333 3 C 0.088 3.912 4 C -0.205 4.205 5 C -0.136 4.136 6 C -0.104 4.104 7 C -0.253 4.253 8 S 0.162 5.838 9 C -0.011 4.011 10 C -0.399 4.399 11 H 0.096 0.904 12 C 0.017 3.983 13 N -0.799 5.799 14 Si 1.014 2.986 15 H -0.258 1.258 16 H -0.254 1.254 17 H -0.256 1.256 18 C -0.178 4.178 19 O -0.472 6.472 20 C -0.058 4.058 21 H 0.059 0.941 22 H 0.113 0.887 23 H 0.062 0.938 24 H 0.149 0.851 25 H 0.152 0.848 26 H 0.128 0.872 27 H 0.314 0.686 28 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.974 1.412 1.527 5.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.247 6.247 3 C 0.041 3.959 4 C -0.226 4.226 5 C -0.156 4.156 6 C -0.127 4.127 7 C -0.368 4.368 8 S 0.421 5.579 9 C -0.131 4.131 10 C -0.432 4.432 11 H 0.114 0.886 12 C -0.202 4.202 13 N -0.425 5.425 14 Si 0.832 3.168 15 H -0.183 1.183 16 H -0.178 1.178 17 H -0.180 1.180 18 C -0.229 4.229 19 O -0.277 6.277 20 C -0.066 4.066 21 H 0.077 0.923 22 H 0.131 0.869 23 H 0.081 0.919 24 H 0.166 0.834 25 H 0.170 0.830 26 H 0.146 0.854 27 H 0.128 0.872 28 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.507 2.446 0.906 4.371 hybrid contribution -0.892 -1.444 0.487 1.766 sum -4.399 1.002 1.392 4.722 Atomic orbital electron populations 1.23246 0.77588 1.04813 1.01749 1.86071 1.22408 1.27258 1.88969 1.19136 0.90098 0.85159 1.01474 1.21033 1.00037 0.91661 1.09898 1.20819 0.93425 0.97384 1.04015 1.20477 0.93769 0.95562 1.02862 1.23556 1.02837 0.95822 1.14539 1.84445 0.93867 1.00769 1.78785 1.22040 0.95954 0.97226 0.97879 1.19417 0.89912 0.95519 1.38382 0.88613 1.27268 1.03840 0.97919 0.91148 1.68667 1.27246 1.14347 1.32288 0.84671 0.74413 0.77678 0.80003 1.18277 1.17793 1.17982 1.17102 0.89249 0.83551 1.33032 1.84818 1.89917 1.22226 1.30722 1.17851 0.91348 0.93594 1.03850 0.92287 0.86921 0.91910 0.83393 0.82992 0.85383 0.87209 0.80634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.80 113.37 1.11 1.68 15 2 O -0.33 -13.99 9.59 -79.63 -0.76 -14.75 15 3 C 0.09 3.99 6.77 23.13 0.16 4.14 15 4 C -0.21 -7.60 9.00 22.24 0.20 -7.40 15 5 C -0.14 -4.82 10.03 22.27 0.22 -4.60 15 6 C -0.10 -4.26 10.05 22.49 0.23 -4.04 15 7 C -0.25 -12.47 6.45 23.04 0.15 -12.32 15 8 S 0.16 8.21 20.10 -56.49 -1.14 7.08 15 9 C -0.01 -0.63 6.13 22.48 0.14 -0.49 15 10 C -0.40 -21.05 9.08 23.04 0.21 -20.84 15 11 H 0.10 4.98 7.71 -2.91 -0.02 4.95 15 12 C 0.02 0.77 5.50 85.24 0.47 1.24 15 13 N -0.80 -37.54 10.58 21.84 0.23 -37.31 15 14 Si 1.01 34.85 29.56 68.60 2.03 36.87 15 15 H -0.26 -8.65 7.11 99.48 0.71 -7.94 15 16 H -0.25 -7.98 7.11 99.48 0.71 -7.27 15 17 H -0.26 -8.73 7.11 99.48 0.71 -8.02 15 18 C -0.18 -9.99 6.84 22.63 0.15 -9.84 15 19 O -0.47 -25.08 12.33 -78.42 -0.97 -26.04 15 20 C -0.06 -3.05 5.87 -21.35 -0.13 -3.18 15 21 H 0.06 1.45 7.64 -2.38 -0.02 1.43 15 22 H 0.11 2.50 8.14 -2.39 -0.02 2.48 15 23 H 0.06 1.49 7.64 -2.39 -0.02 1.47 15 24 H 0.15 4.25 6.22 -2.91 -0.02 4.23 15 25 H 0.15 4.01 8.06 -2.91 -0.02 3.99 15 26 H 0.13 4.53 8.06 -2.91 -0.02 4.50 15 27 H 0.31 12.90 8.30 -92.71 -0.77 12.13 15 28 H 0.34 15.75 9.06 -74.05 -0.67 15.08 15 Total: -1.00 -65.61 259.83 2.84 -62.77 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.54 Total: 27.04 kcal Atomic # 6 Polarization: -58.56 SS G_CDS: 2.91 Total: -55.65 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.23 Total: -37.31 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -1.73 Total: -40.79 kcal Atomic # 14 Polarization: 34.85 SS G_CDS: 2.03 Total: 36.87 kcal Atomic # 16 Polarization: 8.21 SS G_CDS: -1.14 Total: 7.08 kcal Total: -65.61 2.84 -62.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396383866.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.022 kcal (2) G-P(sol) polarization free energy of solvation -65.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds