Wall clock time and date at job start Mon Mar 30 2020 05:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35929 * 116.99509 * 2 1 4 4 S 1.75280 * 124.36380 * 0.11027 * 3 2 1 5 5 C 1.75883 * 92.26628 * 180.21477 * 4 3 2 6 6 C 1.39511 * 109.88501 * 359.82993 * 5 4 3 7 7 C 1.41318 * 119.00942 * 179.97438 * 6 5 4 8 8 C 1.37867 * 120.90070 * 0.02562 * 7 6 5 9 9 C 1.37844 * 120.73683 * 359.97438 * 8 7 6 10 10 C 1.40517 * 119.88862 * 0.02562 * 9 8 7 11 11 C 1.40952 * 120.10113 * 179.97438 * 10 9 8 12 12 H 1.08010 * 119.99829 * 204.96921 * 11 10 9 13 13 C 1.39821 * 120.00518 * 24.95925 * 11 10 9 14 14 N 1.30929 * 119.99729 * 17.93114 * 13 11 10 15 15 Si 1.86801 * 120.00511 * 197.92629 * 13 11 10 16 16 H 1.48496 * 109.46759 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46965 * 120.00074 * 15 13 11 18 18 H 1.48502 * 109.47201 * 240.00404 * 15 13 11 19 19 C 1.32723 * 124.35799 * 180.02562 * 3 2 1 20 20 O 1.36332 * 122.65003 * 359.97438 * 19 3 2 21 21 H 1.08993 * 109.46928 * 60.00755 * 1 2 3 22 22 H 1.09001 * 109.47014 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47515 * 300.00220 * 1 2 3 24 24 H 1.08000 * 119.55554 * 179.97438 * 7 6 5 25 25 H 1.07998 * 119.63245 * 179.97438 * 8 7 6 26 26 H 1.07997 * 120.05559 * 179.97438 * 9 8 7 27 27 H 0.97001 * 119.99893 * 179.97438 * 14 13 11 28 28 H 0.96705 * 114.00192 * 269.70937 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2112 0.0000 4 16 1.2058 2.7495 0.0028 5 6 2.7149 3.6529 -0.0056 6 6 3.7959 2.7710 -0.0063 7 6 5.1082 3.2955 -0.0132 8 6 5.3266 4.6567 -0.0187 9 6 4.2684 5.5401 -0.0181 10 6 2.9502 5.0536 -0.0113 11 6 1.8648 5.9528 -0.0101 12 1 0.9095 5.6457 0.3896 13 6 2.0246 7.2425 -0.5260 14 7 3.0348 7.5116 -1.3143 15 14 0.7970 8.5815 -0.0909 16 1 -0.2441 8.0248 0.8098 17 1 1.5010 9.6944 0.5954 18 1 0.1586 9.0899 -1.3315 19 6 3.3623 1.3813 -0.0005 20 8 4.2388 0.3371 -0.0005 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 5.9515 2.6208 -0.0134 25 1 6.3381 5.0352 -0.0236 26 1 4.4522 6.6043 -0.0220 27 1 3.1456 8.4062 -1.6725 28 1 4.4955 0.0389 0.8829 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396383911.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:36 Heat of formation + Delta-G solvation = -62.748975 kcal Electronic energy + Delta-G solvation = -15549.080981 eV Core-core repulsion = 12849.017992 eV Total energy + Delta-G solvation = -2700.062989 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.58235 -39.44574 -38.04386 -35.76673 -33.85801 -31.82084 -29.73353 -27.58981 -27.23629 -23.94208 -22.87556 -21.87975 -19.88562 -18.63192 -18.55678 -17.27582 -17.07122 -16.97285 -16.55630 -15.76034 -15.21815 -15.08026 -14.67140 -14.14368 -13.89659 -13.47480 -13.17057 -12.90783 -12.83788 -12.60787 -12.37465 -12.24943 -11.92521 -11.44872 -11.19518 -11.09845 -11.02911 -9.94954 -8.96700 -8.73301 -8.45849 -6.40618 0.10913 0.42091 0.78918 1.16326 1.31942 1.39041 1.53443 1.60924 2.17496 2.20939 2.65696 3.46325 3.53433 4.25319 4.27704 4.28426 4.56108 4.60873 4.66075 4.84068 4.95408 5.17688 5.27371 5.41673 5.67679 5.85695 5.90130 6.05601 6.15988 6.53009 6.76147 6.82641 6.85704 8.22769 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.026480 B = 0.008023 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.165248 B = 3489.018023 C = 4457.853544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.289 6.289 3 C -0.004 4.004 4 S 0.078 5.922 5 C -0.250 4.250 6 C -0.053 4.053 7 C -0.214 4.214 8 C -0.084 4.084 9 C -0.193 4.193 10 C 0.123 3.877 11 C -0.484 4.484 12 H 0.077 0.923 13 C 0.041 3.959 14 N -0.810 5.810 15 Si 0.982 3.018 16 H -0.258 1.258 17 H -0.260 1.260 18 H -0.264 1.264 19 C 0.022 3.978 20 O -0.478 6.478 21 H 0.059 0.941 22 H 0.140 0.860 23 H 0.064 0.936 24 H 0.117 0.883 25 H 0.125 0.875 26 H 0.115 0.885 27 H 0.294 0.706 28 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.192 -6.154 3.482 8.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.204 6.204 3 C -0.164 4.164 4 S 0.335 5.665 5 C -0.364 4.364 6 C -0.059 4.059 7 C -0.236 4.236 8 C -0.103 4.103 9 C -0.216 4.216 10 C 0.118 3.882 11 C -0.512 4.512 12 H 0.096 0.904 13 C -0.177 4.177 14 N -0.434 5.434 15 Si 0.803 3.197 16 H -0.181 1.181 17 H -0.184 1.184 18 H -0.189 1.189 19 C -0.035 4.035 20 O -0.288 6.288 21 H 0.078 0.922 22 H 0.158 0.842 23 H 0.083 0.917 24 H 0.135 0.865 25 H 0.143 0.857 26 H 0.133 0.867 27 H 0.105 0.895 28 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -5.555 -5.803 2.721 8.481 hybrid contribution 1.048 0.317 0.439 1.180 sum -4.507 -5.486 3.160 7.771 Atomic orbital electron populations 1.23556 0.76023 1.06564 1.02420 1.85991 1.23180 1.21665 1.89517 1.23227 0.95060 0.90042 1.08094 1.83334 1.07730 0.92806 1.82663 1.22400 0.94358 0.97517 1.22158 1.18949 0.94734 0.90126 1.02131 1.20393 0.93445 0.94905 1.14852 1.20827 0.98585 0.92842 0.98095 1.21200 0.91583 0.99138 1.09670 1.17285 0.94385 0.88151 0.88389 1.19693 0.97743 0.97503 1.36286 0.90443 1.26742 0.98078 1.01229 0.91607 1.69905 1.28974 1.23488 1.21082 0.85145 0.78260 0.76984 0.79361 1.18118 1.18427 1.18876 1.17629 0.86149 0.86516 1.13225 1.84875 1.62605 1.47254 1.34060 0.92243 0.84214 0.91712 0.86499 0.85710 0.86703 0.89539 0.75132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 10.23 113.37 1.16 1.39 15 2 O -0.29 -9.79 10.50 -84.00 -0.88 -10.67 15 3 C 0.00 -0.16 7.12 66.65 0.47 0.31 15 4 S 0.08 3.25 21.45 -56.49 -1.21 2.04 15 5 C -0.25 -12.60 6.36 23.52 0.15 -12.45 15 6 C -0.05 -2.53 6.04 -20.32 -0.12 -2.65 15 7 C -0.21 -9.81 10.08 22.94 0.23 -9.58 15 8 C -0.08 -3.89 9.97 22.09 0.22 -3.67 15 9 C -0.19 -9.99 8.67 22.73 0.20 -9.80 15 10 C 0.12 6.63 5.59 -21.12 -0.12 6.51 15 11 C -0.48 -25.27 8.81 23.32 0.21 -25.07 15 12 H 0.08 3.94 7.74 -2.91 -0.02 3.92 15 13 C 0.04 1.97 5.12 85.21 0.44 2.40 15 14 N -0.81 -40.54 10.98 21.81 0.24 -40.30 15 15 Si 0.98 36.40 29.60 68.60 2.03 38.43 15 16 H -0.26 -9.41 7.11 99.48 0.71 -8.71 15 17 H -0.26 -9.17 7.11 99.48 0.71 -8.46 15 18 H -0.26 -9.38 7.11 99.48 0.71 -8.67 15 19 C 0.02 0.96 6.93 22.99 0.16 1.12 15 20 O -0.48 -17.94 13.57 -88.61 -1.20 -19.14 15 21 H 0.06 1.39 8.02 -2.39 -0.02 1.37 15 22 H 0.14 2.18 8.14 -2.39 -0.02 2.16 15 23 H 0.06 1.43 8.02 -2.39 -0.02 1.41 15 24 H 0.12 4.74 8.06 -2.91 -0.02 4.72 15 25 H 0.12 4.89 8.06 -2.91 -0.02 4.87 15 26 H 0.12 6.05 6.17 -2.91 -0.02 6.03 15 27 H 0.29 13.09 8.30 -92.71 -0.77 12.32 15 28 H 0.39 10.65 9.07 -74.05 -0.67 9.98 15 Total: -1.00 -62.69 263.90 2.50 -60.19 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.53 Total: 20.93 kcal Atomic # 6 Polarization: -54.47 SS G_CDS: 2.99 Total: -51.48 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.24 Total: -40.30 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -2.08 Total: -29.81 kcal Atomic # 14 Polarization: 36.40 SS G_CDS: 2.03 Total: 38.43 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.21 Total: 2.04 kcal Total: -62.69 2.50 -60.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396383911.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.558 kcal (2) G-P(sol) polarization free energy of solvation -62.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds