Wall clock time and date at job start Mon Mar 30 2020 05:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35978 * 117.00096 * 2 1 4 4 C 1.38018 * 119.97885 * 0.27228 * 3 2 1 5 5 C 1.39818 * 120.40738 * 180.26036 * 4 3 2 6 6 S 1.75805 * 130.08337 * 179.77625 * 5 4 3 7 7 C 1.69970 * 93.23670 * 179.97438 * 6 5 4 8 8 C 1.36465 * 111.95055 * 359.97438 * 7 6 5 9 9 C 1.40797 * 123.29929 * 180.02562 * 8 7 6 10 10 H 1.07995 * 119.99886 * 157.27908 * 9 8 7 11 11 C 1.39694 * 119.99813 * 337.28121 * 9 8 7 12 12 N 1.31087 * 119.99899 * 160.58083 * 11 9 8 13 13 Si 1.86803 * 120.00118 * 340.57121 * 11 9 8 14 14 H 1.48507 * 109.46747 * 94.05425 * 13 11 9 15 15 H 1.48497 * 109.47514 * 214.05661 * 13 11 9 16 16 H 1.48495 * 109.46928 * 334.05991 * 13 11 9 17 17 C 1.39326 * 119.72910 * 359.74353 * 5 4 3 18 18 C 1.40672 * 119.37008 * 359.97438 * 17 5 4 19 19 C 1.37736 * 120.34712 * 0.02562 * 18 17 5 20 20 O 1.36055 * 119.94644 * 179.97438 * 19 18 17 21 21 H 1.08998 * 109.46825 * 299.99560 * 1 2 3 22 22 H 1.09001 * 109.47131 * 59.99601 * 1 2 3 23 23 H 1.09005 * 109.47195 * 179.97438 * 1 2 3 24 24 H 1.08001 * 119.79313 * 359.97438 * 4 3 2 25 25 H 1.08005 * 124.02202 * 179.97438 * 7 6 5 26 26 H 0.97006 * 119.99950 * 179.97438 * 12 11 9 27 27 H 1.07997 * 119.82616 * 180.02562 * 18 17 5 28 28 H 0.96697 * 114.00472 * 89.99748 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2943 2.3688 0.0057 5 6 1.9197 3.6193 0.0003 6 16 1.2230 5.2334 0.0001 7 6 2.7431 5.9940 -0.0076 8 6 3.7656 5.0903 -0.0096 9 6 5.1241 5.4603 -0.0153 10 1 5.8731 4.7705 0.3446 11 6 5.5031 6.7196 -0.4864 12 7 6.6690 7.2194 -0.1559 13 14 4.3485 7.6913 -1.5874 14 1 3.5349 8.6161 -0.7578 15 1 5.1420 8.4744 -2.5684 16 1 3.4507 6.7558 -2.3112 17 6 3.3108 3.6960 -0.0055 18 6 4.0672 2.5100 -0.0053 19 6 3.4393 1.2841 0.0001 20 8 4.1789 0.1422 -0.0003 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 0.2160 2.3080 0.0097 25 1 2.8829 7.0650 -0.0106 26 1 6.9323 8.0937 -0.4833 27 1 5.1460 2.5609 -0.0094 28 1 4.3963 -0.1860 0.8830 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396384010.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:25 Heat of formation + Delta-G solvation = -67.387666 kcal Electronic energy + Delta-G solvation = -15573.732044 eV Core-core repulsion = 12873.467906 eV Total energy + Delta-G solvation = -2700.264138 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.35807 -39.09156 -38.23926 -36.07004 -34.11735 -31.22603 -30.08820 -28.43312 -27.32192 -24.07518 -23.43320 -21.64109 -19.69311 -19.08383 -18.31289 -18.10739 -17.04125 -16.78782 -16.62468 -15.91161 -15.18367 -15.18017 -14.88325 -14.43660 -14.13532 -13.96623 -13.61356 -13.00881 -12.74253 -12.61226 -12.39968 -12.24063 -11.80224 -11.62392 -11.35840 -11.22501 -10.88848 -10.33147 -8.98991 -8.87994 -8.64878 -6.46312 -0.01618 0.11845 0.95789 1.11633 1.26899 1.42406 1.60164 1.75171 2.11266 2.29743 2.49761 3.13036 3.23436 3.80506 4.08723 4.17773 4.43947 4.44369 4.55484 4.68608 4.75593 4.87029 4.92473 5.02533 5.22091 5.45940 5.57728 5.64665 6.20580 6.28727 6.43553 6.72594 6.89525 8.08359 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.030834 B = 0.007643 C = 0.006352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.881847 B = 3662.615862 C = 4407.087285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.316 6.316 3 C 0.119 3.881 4 C -0.172 4.172 5 C -0.113 4.113 6 S 0.108 5.892 7 C -0.476 4.476 8 C 0.078 3.922 9 C -0.449 4.449 10 H 0.066 0.934 11 C 0.053 3.947 12 N -0.839 5.839 13 Si 0.967 3.033 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.253 1.253 17 C -0.116 4.116 18 C -0.070 4.070 19 C 0.063 3.937 20 O -0.491 6.491 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.126 0.874 24 H 0.161 0.839 25 H 0.130 0.870 26 H 0.296 0.704 27 H 0.130 0.870 28 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.356 -9.982 0.420 15.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.230 6.230 3 C 0.070 3.930 4 C -0.197 4.197 5 C -0.229 4.229 6 S 0.370 5.630 7 C -0.610 4.610 8 C 0.068 3.932 9 C -0.481 4.481 10 H 0.085 0.915 11 C -0.163 4.163 12 N -0.465 5.465 13 Si 0.792 3.208 14 H -0.193 1.193 15 H -0.205 1.205 16 H -0.177 1.177 17 C -0.125 4.125 18 C -0.090 4.090 19 C 0.015 3.985 20 O -0.303 6.303 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.144 0.856 24 H 0.178 0.822 25 H 0.147 0.853 26 H 0.106 0.894 27 H 0.148 0.852 28 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -12.478 -9.280 -0.165 15.551 hybrid contribution 1.673 0.500 0.238 1.763 sum -10.804 -8.780 0.073 13.922 Atomic orbital electron populations 1.23435 0.76426 1.05892 1.02378 1.86119 1.23436 1.24966 1.88479 1.19029 0.91192 0.84997 0.97792 1.20508 1.00650 0.88322 1.10233 1.22680 0.96291 0.98712 1.05226 1.81286 1.07383 0.92896 1.81474 1.23832 0.96783 1.01503 1.38864 1.17620 0.93634 0.89157 0.92778 1.18983 0.91930 0.99959 1.37191 0.91539 1.26719 0.96634 0.97280 0.95668 1.69811 1.22027 1.18052 1.36570 0.85392 0.78262 0.78264 0.78841 1.19285 1.20543 1.17661 1.19354 0.92743 0.93714 1.06735 1.20996 1.00183 0.89650 0.98160 1.17277 0.86716 0.85899 1.08623 1.84842 1.72038 1.38469 1.34915 0.91498 0.91938 0.85557 0.82197 0.85264 0.89389 0.85209 0.74050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 15 2 O -0.32 -8.58 10.28 -79.38 -0.82 -9.39 15 3 C 0.12 3.86 6.69 22.52 0.15 4.01 15 4 C -0.17 -5.63 9.07 22.60 0.20 -5.43 15 5 C -0.11 -4.60 6.43 22.91 0.15 -4.45 15 6 S 0.11 4.34 22.96 -56.49 -1.30 3.04 15 7 C -0.48 -23.42 8.08 67.41 0.54 -22.87 15 8 C 0.08 4.04 5.34 -20.87 -0.11 3.93 15 9 C -0.45 -25.23 9.57 23.25 0.22 -25.00 15 10 H 0.07 3.91 7.88 -2.91 -0.02 3.89 15 11 C 0.05 2.90 5.45 85.16 0.46 3.36 15 12 N -0.84 -45.96 13.94 21.79 0.30 -45.66 15 13 Si 0.97 44.54 24.56 68.60 1.68 46.22 15 14 H -0.27 -11.87 6.65 99.48 0.66 -11.21 15 15 H -0.28 -11.93 7.11 99.48 0.71 -11.22 15 16 H -0.25 -12.00 6.77 99.48 0.67 -11.33 15 17 C -0.12 -5.38 6.02 -20.22 -0.12 -5.50 15 18 C -0.07 -2.88 9.79 22.75 0.22 -2.66 15 19 C 0.06 2.24 6.70 22.45 0.15 2.39 15 20 O -0.49 -15.06 13.28 -80.26 -1.07 -16.13 15 21 H 0.07 1.00 7.64 -2.39 -0.02 0.98 15 22 H 0.06 0.99 7.66 -2.39 -0.02 0.97 15 23 H 0.13 1.41 8.14 -2.38 -0.02 1.39 15 24 H 0.16 4.04 6.25 -2.91 -0.02 4.03 15 25 H 0.13 6.47 4.35 -2.91 -0.01 6.46 15 26 H 0.30 14.57 8.30 -92.70 -0.77 13.80 15 27 H 0.13 5.39 7.88 -2.91 -0.02 5.37 15 28 H 0.40 8.21 9.07 -74.06 -0.67 7.54 15 Total: -1.00 -64.42 255.67 2.26 -62.16 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.47 Total: 10.65 kcal Atomic # 6 Polarization: -53.88 SS G_CDS: 2.99 Total: -50.89 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.30 Total: -45.66 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -1.88 Total: -25.52 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.68 Total: 46.22 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.30 Total: 3.04 kcal Total: -64.42 2.26 -62.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396384010.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.230 kcal (2) G-P(sol) polarization free energy of solvation -64.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds