Wall clock time and date at job start Mon Mar 30 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35910 * 116.99837 * 2 1 4 4 C 1.38725 * 119.51653 * 0.02562 * 3 2 1 5 5 C 1.39489 * 121.41060 * 180.02562 * 4 3 2 6 6 S 1.76065 * 130.51198 * 179.97438 * 5 4 3 7 7 C 1.75501 * 91.57677 * 179.85608 * 6 5 4 8 8 C 1.33205 * 110.66465 * 0.33387 * 7 6 5 9 9 O 1.36106 * 122.15969 * 179.86091 * 8 7 6 10 10 C 1.39846 * 120.09064 * 0.02562 * 5 4 3 11 11 C 1.47846 * 118.17138 * 359.97438 * 10 5 4 12 12 C 1.40558 * 120.36625 * 180.02562 * 11 10 5 13 13 H 1.08003 * 120.00375 * 26.48393 * 12 11 10 14 14 C 1.39878 * 120.00166 * 206.49284 * 12 11 10 15 15 N 1.30899 * 119.99709 * 14.90232 * 14 12 11 16 16 Si 1.86797 * 119.99869 * 194.90404 * 14 12 11 17 17 H 1.48497 * 109.47467 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.46790 * 119.99826 * 16 14 12 19 19 H 1.48504 * 109.46821 * 239.99559 * 16 14 12 20 20 C 1.38027 * 119.51045 * 180.02562 * 3 2 1 21 21 H 1.09002 * 109.47436 * 59.99583 * 1 2 3 22 22 H 1.09002 * 109.47286 * 180.02562 * 1 2 3 23 23 H 1.09010 * 109.46970 * 300.00002 * 1 2 3 24 24 H 1.08002 * 119.29909 * 0.02562 * 4 3 2 25 25 H 1.07997 * 124.66510 * 180.20006 * 7 6 5 26 26 H 0.96703 * 113.99822 * 269.71870 * 9 8 7 27 27 H 0.97006 * 119.99629 * 180.02562 * 15 14 12 28 28 H 1.07999 * 119.95970 * 359.97438 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2806 2.3680 0.0005 5 6 1.8724 3.6311 0.0000 6 16 1.1455 5.2347 -0.0001 7 6 2.7234 6.0030 0.0036 8 6 3.6917 5.0882 -0.0026 9 8 5.0096 5.4282 -0.0041 10 6 3.2655 3.7527 -0.0016 11 6 4.0742 2.5149 -0.0021 12 6 5.4781 2.5834 -0.0032 13 1 5.9771 3.4459 0.4134 14 6 6.2291 1.5346 -0.5441 15 7 5.6500 0.6378 -1.3017 16 14 8.0582 1.4136 -0.1852 17 1 8.4667 2.5417 0.6898 18 1 8.3444 0.1271 0.4991 19 1 8.8179 1.4761 -1.4597 20 6 3.4249 1.2715 -0.0005 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 0.2034 2.2892 0.0014 25 1 2.8868 7.0705 0.0078 26 1 5.3894 5.5260 -0.8880 27 1 6.1707 -0.0897 -1.6765 28 1 4.0047 0.3603 -0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396384779.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:35 Heat of formation + Delta-G solvation = -64.297760 kcal Electronic energy + Delta-G solvation = -15803.058704 eV Core-core repulsion = 13102.928555 eV Total energy + Delta-G solvation = -2700.130149 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.72309 -39.57068 -37.44938 -35.88146 -33.62661 -31.55738 -29.96457 -27.69243 -27.05123 -24.12765 -22.80127 -21.41916 -19.97898 -18.35692 -18.09648 -17.48367 -16.92429 -16.58332 -16.44287 -16.13319 -15.48456 -14.74753 -14.49690 -13.84676 -13.53958 -13.50677 -13.34325 -13.00448 -12.83454 -12.58905 -12.42169 -12.17475 -11.95917 -11.42968 -11.30284 -11.04272 -10.75866 -9.98600 -8.90469 -8.72467 -8.37831 -6.45455 0.12548 0.79025 0.86863 1.24696 1.39400 1.48071 1.56590 1.66077 2.15755 2.55801 2.68459 3.47612 3.76811 4.23215 4.38347 4.43629 4.43873 4.68792 4.71504 4.76570 5.04638 5.14465 5.27125 5.45585 5.53745 5.72327 5.90392 5.94593 6.36313 6.68576 6.73306 6.90204 6.96388 8.12566 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.017587 B = 0.010625 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.741393 B = 2634.627555 C = 4142.340265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.343 6.343 3 C 0.174 3.826 4 C -0.319 4.319 5 C -0.064 4.064 6 S 0.085 5.915 7 C -0.313 4.313 8 C 0.151 3.849 9 O -0.490 6.490 10 C -0.262 4.262 11 C 0.152 3.848 12 C -0.441 4.441 13 H 0.102 0.898 14 C 0.032 3.968 15 N -0.793 5.793 16 Si 0.992 3.008 17 H -0.254 1.254 18 H -0.264 1.264 19 H -0.259 1.259 20 C -0.258 4.258 21 H 0.054 0.946 22 H 0.121 0.879 23 H 0.057 0.943 24 H 0.126 0.874 25 H 0.181 0.819 26 H 0.397 0.603 27 H 0.297 0.703 28 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.180 2.509 -0.144 4.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.257 6.257 3 C 0.127 3.873 4 C -0.345 4.345 5 C -0.179 4.179 6 S 0.345 5.655 7 C -0.446 4.446 8 C 0.095 3.905 9 O -0.302 6.302 10 C -0.268 4.268 11 C 0.147 3.853 12 C -0.467 4.467 13 H 0.120 0.880 14 C -0.187 4.187 15 N -0.416 5.416 16 Si 0.812 3.188 17 H -0.178 1.178 18 H -0.189 1.189 19 H -0.183 1.183 20 C -0.280 4.280 21 H 0.073 0.927 22 H 0.139 0.861 23 H 0.076 0.924 24 H 0.144 0.856 25 H 0.198 0.802 26 H 0.255 0.745 27 H 0.108 0.892 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.547 2.745 0.297 5.319 hybrid contribution 1.842 -0.673 -0.524 2.030 sum -2.705 2.072 -0.226 3.415 Atomic orbital electron populations 1.23202 0.77409 1.04840 1.01592 1.86011 1.22985 1.27717 1.88968 1.18710 0.91933 0.83392 0.93289 1.19719 0.98416 0.89414 1.26970 1.22156 0.95854 0.97582 1.02342 1.83058 1.06974 0.94523 1.80961 1.24996 0.94756 1.03197 1.21644 1.17068 0.84335 0.89609 0.99448 1.84724 1.20450 1.90848 1.34167 1.19655 0.92843 0.94112 1.20179 1.18460 0.93157 0.88284 0.85448 1.20112 0.91193 1.04369 1.31018 0.87975 1.27063 1.06783 0.93097 0.91796 1.69943 1.40999 1.10510 1.20145 0.84992 0.74520 0.79723 0.79604 1.17754 1.18864 1.18325 1.20261 0.90493 0.98220 1.19023 0.92688 0.86095 0.92450 0.85641 0.80175 0.74545 0.89227 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 9.79 113.37 1.11 1.84 15 2 O -0.34 -14.90 10.48 -92.54 -0.97 -15.87 15 3 C 0.17 8.61 6.65 22.34 0.15 8.76 15 4 C -0.32 -14.65 9.03 22.69 0.20 -14.45 15 5 C -0.06 -3.01 6.48 22.96 0.15 -2.86 15 6 S 0.09 3.21 23.29 -56.49 -1.32 1.89 15 7 C -0.31 -11.97 11.08 66.68 0.74 -11.23 15 8 C 0.15 6.70 6.68 21.61 0.14 6.85 15 9 O -0.49 -19.90 11.40 -94.76 -1.08 -20.98 15 10 C -0.26 -13.25 6.03 -19.87 -0.12 -13.37 15 11 C 0.15 8.27 5.74 -19.67 -0.11 8.16 15 12 C -0.44 -22.69 8.51 23.23 0.20 -22.49 15 13 H 0.10 5.12 6.28 -2.91 -0.02 5.10 15 14 C 0.03 1.52 5.18 85.23 0.44 1.96 15 15 N -0.79 -39.58 10.91 21.82 0.24 -39.34 15 16 Si 0.99 35.73 29.58 68.60 2.03 37.76 15 17 H -0.25 -9.05 7.11 99.48 0.71 -8.34 15 18 H -0.26 -9.25 7.11 99.48 0.71 -8.54 15 19 H -0.26 -8.76 7.11 99.48 0.71 -8.05 15 20 C -0.26 -14.07 8.56 22.72 0.19 -13.88 15 21 H 0.05 1.58 7.63 -2.39 -0.02 1.56 15 22 H 0.12 2.75 8.14 -2.39 -0.02 2.73 15 23 H 0.06 1.62 7.62 -2.38 -0.02 1.60 15 24 H 0.13 4.95 6.15 -2.91 -0.02 4.94 15 25 H 0.18 5.69 8.06 -2.91 -0.02 5.66 15 26 H 0.40 12.79 9.07 -74.06 -0.67 12.12 15 27 H 0.30 13.16 8.30 -92.70 -0.77 12.39 15 28 H 0.11 6.39 6.18 -2.91 -0.02 6.37 15 Total: -1.00 -62.26 258.12 2.55 -59.71 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.55 Total: 27.53 kcal Atomic # 6 Polarization: -53.80 SS G_CDS: 3.10 Total: -50.71 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.24 Total: -39.34 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -2.05 Total: -36.85 kcal Atomic # 14 Polarization: 35.73 SS G_CDS: 2.03 Total: 37.76 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -1.32 Total: 1.89 kcal Total: -62.26 2.55 -59.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396384779.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.585 kcal (2) G-P(sol) polarization free energy of solvation -62.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds