Wall clock time and date at job start Mon Mar 30 2020 05:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36189 * 117.00658 * 2 1 4 4 C 1.34211 * 122.23075 * 270.17376 * 3 2 1 5 5 O 1.35627 * 124.72390 * 0.02562 * 4 3 2 6 6 S 1.75497 * 110.55586 * 180.23159 * 4 3 2 7 7 C 1.76050 * 91.60876 * 359.77674 * 6 4 3 8 8 C 1.39273 * 130.47870 * 179.97438 * 7 6 4 9 9 C 1.38353 * 121.50308 * 180.02562 * 8 7 6 10 10 C 1.37482 * 121.12745 * 359.95707 * 9 8 7 11 11 C 1.40399 * 120.11361 * 0.02562 * 10 9 8 12 12 C 1.40511 * 120.41837 * 180.02562 * 11 10 9 13 13 H 1.08007 * 120.00191 * 206.94106 * 12 11 10 14 14 C 1.39777 * 120.00126 * 26.93156 * 12 11 10 15 15 N 1.30973 * 119.99619 * 14.49614 * 14 12 11 16 16 Si 1.86797 * 120.00064 * 194.49107 * 14 12 11 17 17 H 1.48492 * 109.47163 * 60.00324 * 16 14 12 18 18 H 1.48504 * 109.47097 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47081 * 300.00285 * 16 14 12 20 20 C 1.39807 * 122.23315 * 89.99614 * 3 2 1 21 21 H 1.08990 * 109.47872 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47148 * 300.00528 * 1 2 3 23 23 H 1.09001 * 109.46814 * 60.00052 * 1 2 3 24 24 H 0.96700 * 114.00332 * 180.22614 * 5 4 3 25 25 H 1.07995 * 119.24443 * 0.02562 * 8 7 6 26 26 H 1.08001 * 119.43848 * 179.97438 * 9 8 7 27 27 H 1.07995 * 119.94639 * 180.02562 * 10 9 8 28 28 H 0.97006 * 119.99761 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0474 1.2134 0.0000 4 6 2.3693 1.8527 -1.1353 5 8 2.1244 1.3816 -2.3833 6 16 3.1566 3.3804 -0.7802 7 6 3.0179 3.1058 0.9532 8 6 3.4248 3.8918 2.0285 9 6 3.2202 3.4895 3.3364 10 6 2.6042 2.2945 3.6243 11 6 2.1704 1.4571 2.5842 12 6 1.5397 0.2347 2.8711 13 1 1.5948 -0.5803 2.1646 14 6 0.8411 0.0734 4.0709 15 7 0.5290 1.1208 4.7928 16 14 0.3525 -1.6358 4.6447 17 1 1.5713 -2.4646 4.8252 18 1 -0.3742 -1.5355 5.9360 19 1 -0.5287 -2.2658 3.6290 20 6 2.3859 1.8778 1.1826 21 1 -0.3634 -1.0275 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 2.4249 1.9680 -3.0911 25 1 3.9112 4.8368 1.8371 26 1 3.5496 4.1251 4.1450 27 1 2.4538 1.9994 4.6522 28 1 0.0438 1.0089 5.6253 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396385225.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:05 Heat of formation + Delta-G solvation = -39.782278 kcal Electronic energy + Delta-G solvation = -16016.543734 eV Core-core repulsion = 13317.476656 eV Total energy + Delta-G solvation = -2699.067078 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.95765 -37.14770 -36.41575 -34.15283 -32.38013 -29.81558 -27.70193 -26.06886 -25.19614 -22.24599 -21.20945 -19.50400 -18.57913 -17.36384 -16.18620 -15.62939 -15.35107 -14.98960 -14.85993 -13.81886 -13.36869 -13.27133 -13.18349 -12.54952 -12.15621 -11.99142 -11.55342 -11.40603 -11.14165 -11.02548 -10.68299 -10.48745 -9.97540 -9.69786 -9.56634 -9.25249 -8.90138 -8.16461 -7.18616 -7.03909 -6.69492 -4.47725 1.79326 2.13552 2.62028 2.63952 2.94930 2.98457 3.06060 3.31337 3.75113 4.37931 4.44751 4.86619 5.43853 5.99962 6.09749 6.11650 6.30762 6.35902 6.42252 6.78672 6.85154 6.89128 7.01206 7.18879 7.43517 7.71273 7.84118 7.87417 7.99115 8.37024 8.45009 8.59355 8.70204 9.86948 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.023873 B = 0.009890 C = 0.007245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.579030 B = 2830.503367 C = 3864.025997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.312 6.312 3 C 0.114 3.886 4 C -0.069 4.069 5 O -0.443 6.443 6 S -0.008 6.008 7 C -0.065 4.065 8 C -0.225 4.225 9 C -0.065 4.065 10 C -0.184 4.184 11 C 0.156 3.844 12 C -0.418 4.418 13 H 0.100 0.900 14 C 0.069 3.931 15 N -0.773 5.773 16 Si 0.916 3.084 17 H -0.259 1.259 18 H -0.276 1.276 19 H -0.261 1.261 20 C -0.191 4.191 21 H 0.080 0.920 22 H 0.054 0.946 23 H 0.031 0.969 24 H 0.383 0.617 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.125 0.875 28 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.045 0.560 -4.187 4.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.229 6.229 3 C 0.060 3.940 4 C -0.227 4.227 5 O -0.246 6.246 6 S 0.247 5.753 7 C -0.180 4.180 8 C -0.251 4.251 9 C -0.086 4.086 10 C -0.205 4.205 11 C 0.151 3.849 12 C -0.445 4.445 13 H 0.118 0.882 14 C -0.152 4.152 15 N -0.396 5.396 16 Si 0.740 3.260 17 H -0.183 1.183 18 H -0.201 1.201 19 H -0.185 1.185 20 C -0.197 4.197 21 H 0.098 0.902 22 H 0.072 0.928 23 H 0.049 0.951 24 H 0.233 0.767 25 H 0.110 0.890 26 H 0.115 0.885 27 H 0.143 0.857 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.179 1.008 -4.626 4.738 hybrid contribution -0.753 -0.986 0.662 1.406 sum -0.575 0.022 -3.964 4.005 Atomic orbital electron populations 1.22790 0.80458 1.01757 1.00210 1.86018 1.18955 1.23889 1.93992 1.16753 1.00823 0.87701 0.88753 1.22433 1.13875 0.99017 0.87414 1.84744 1.80895 1.46932 1.12010 1.83595 1.68110 1.19658 1.03910 1.21549 1.04900 0.98550 0.92958 1.19435 1.13898 1.00822 0.90964 1.20482 0.97630 0.96330 0.94206 1.21100 1.04115 0.95955 0.99324 1.18356 0.87586 0.91886 0.87075 1.19839 1.24297 0.98880 1.01485 0.88247 1.26126 0.94287 0.99227 0.95543 1.69886 1.26425 1.31327 1.11937 0.86202 0.79835 0.81465 0.78530 1.18338 1.20067 1.18494 1.18796 1.12183 0.95237 0.93498 0.90179 0.92755 0.95052 0.76721 0.88951 0.88494 0.85709 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.86 10.60 101.05 1.07 1.93 15 2 O -0.31 -7.34 8.45 -28.47 -0.24 -7.58 15 3 C 0.11 2.76 5.73 -40.41 -0.23 2.53 15 4 C -0.07 -1.47 7.60 29.31 0.22 -1.24 15 5 O -0.44 -8.09 13.58 -26.70 -0.36 -8.45 15 6 S -0.01 -0.16 23.24 -107.50 -2.50 -2.65 15 7 C -0.07 -1.53 6.47 -38.54 -0.25 -1.78 15 8 C -0.23 -5.07 10.01 -39.15 -0.39 -5.46 15 9 C -0.07 -1.48 9.95 -39.81 -0.40 -1.88 15 10 C -0.18 -4.56 8.64 -39.04 -0.34 -4.90 15 11 C 0.16 4.08 5.74 -104.27 -0.60 3.48 15 12 C -0.42 -10.54 7.70 -38.15 -0.29 -10.83 15 13 H 0.10 2.52 6.13 -52.48 -0.32 2.20 15 14 C 0.07 1.61 5.18 -17.34 -0.09 1.52 15 15 N -0.77 -18.41 10.92 55.54 0.61 -17.81 15 16 Si 0.92 17.56 29.58 -169.99 -5.03 12.53 15 17 H -0.26 -4.98 7.11 56.52 0.40 -4.58 15 18 H -0.28 -5.10 7.11 56.52 0.40 -4.70 15 19 H -0.26 -4.94 7.11 56.52 0.40 -4.54 15 20 C -0.19 -4.85 6.02 -104.69 -0.63 -5.48 15 21 H 0.08 1.35 8.14 -51.93 -0.42 0.93 15 22 H 0.05 1.15 7.62 -51.93 -0.40 0.75 15 23 H 0.03 0.58 8.14 -51.93 -0.42 0.15 15 24 H 0.38 4.82 9.02 45.56 0.41 5.23 15 25 H 0.09 1.85 8.06 -52.49 -0.42 1.43 15 26 H 0.10 1.89 8.06 -52.49 -0.42 1.47 15 27 H 0.13 3.12 6.20 -52.49 -0.33 2.79 15 28 H 0.29 6.18 8.30 -40.82 -0.34 5.84 15 LS Contribution 260.39 15.07 3.92 3.92 Total: -1.00 -28.20 260.39 -6.98 -35.18 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -1.46 Total: 6.97 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -1.93 Total: -22.12 kcal Atomic # 7 Polarization: -18.41 SS G_CDS: 0.61 Total: -17.81 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.60 Total: -16.03 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.50 Total: -2.65 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.20 -6.98 -35.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396385225.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.598 kcal (2) G-P(sol) polarization free energy of solvation -28.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds