Wall clock time and date at job start Mon Mar 30 2020 05:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35494 * 117.00237 * 2 1 4 4 C 1.41177 * 120.07718 * 269.97239 * 3 2 1 5 5 C 1.45709 * 129.11566 * 0.02673 * 4 3 2 6 6 O 1.36139 * 122.61780 * 359.95817 * 5 4 3 7 7 C 1.32104 * 114.76206 * 179.97438 * 5 4 3 8 8 S 1.75253 * 111.43126 * 0.02562 * 7 5 4 9 9 C 1.39832 * 119.01968 * 180.02562 * 4 3 2 10 10 C 1.40702 * 120.19764 * 0.02562 * 9 4 3 11 11 C 1.35593 * 121.02249 * 0.02562 * 10 9 4 12 12 C 1.40688 * 120.08489 * 89.99679 * 3 2 1 13 13 C 1.41017 * 120.11929 * 0.25327 * 12 3 2 14 14 H 1.08002 * 120.00398 * 24.80122 * 13 12 3 15 15 C 1.39747 * 120.00277 * 204.80370 * 13 12 3 16 16 N 1.31015 * 119.99481 * 17.85497 * 15 13 12 17 17 Si 1.86795 * 120.00456 * 197.86023 * 15 13 12 18 18 H 1.48496 * 109.47298 * 89.99465 * 17 15 13 19 19 H 1.48501 * 109.47124 * 209.99677 * 17 15 13 20 20 H 1.48504 * 109.46952 * 329.99677 * 17 15 13 21 21 H 1.08998 * 109.47306 * 300.00587 * 1 2 3 22 22 H 1.08999 * 109.46759 * 60.00506 * 1 2 3 23 23 H 1.08995 * 109.46822 * 180.02562 * 1 2 3 24 24 H 0.96705 * 113.99263 * 269.99032 * 6 5 4 25 25 H 1.07997 * 124.28748 * 180.02562 * 7 5 4 26 26 H 1.08002 * 119.49093 * 179.97438 * 10 9 4 27 27 H 1.07995 * 119.91937 * 180.02562 * 11 10 9 28 28 H 0.96999 * 119.99560 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2072 0.0000 4 6 2.3660 1.8374 -1.2217 5 6 2.1311 1.3761 -2.5837 6 8 1.5264 0.1887 -2.8624 7 6 2.5510 2.2001 -3.5271 8 16 3.2841 3.6372 -2.8423 9 6 3.0012 3.0828 -1.1959 10 6 3.3127 3.6930 0.0331 11 6 3.0069 3.0917 1.2093 12 6 2.3644 1.8356 1.2174 13 6 2.0510 1.2089 2.4411 14 1 1.9483 0.1347 2.4870 15 6 1.8731 1.9776 3.5945 16 7 1.6483 3.2646 3.4957 17 14 1.9558 1.1704 5.2770 18 1 3.3554 1.2009 5.7724 19 1 1.0797 1.9071 6.2231 20 1 1.4981 -0.2385 5.1731 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 2.1391 -0.5552 -2.9430 25 1 2.4548 2.0120 -4.5862 26 1 3.8038 4.6549 0.0397 27 1 3.2538 3.5764 2.1422 28 1 1.5252 3.7982 4.2963 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396386210.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:22 Heat of formation + Delta-G solvation = -45.271517 kcal Electronic energy + Delta-G solvation = -15973.040835 eV Core-core repulsion = 13273.735726 eV Total energy + Delta-G solvation = -2699.305110 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.98729 -37.19030 -35.94374 -34.18133 -32.24158 -29.48552 -28.14485 -26.11135 -25.05164 -22.39744 -20.91372 -20.12261 -17.85808 -17.03721 -16.44103 -15.59800 -15.33185 -14.84086 -14.34840 -14.09072 -13.85994 -13.58590 -12.70298 -12.50186 -12.11835 -11.68813 -11.47928 -11.44188 -11.14203 -10.88961 -10.60291 -10.36616 -10.02479 -9.94797 -9.60047 -9.30065 -8.66260 -8.19734 -7.50992 -7.06990 -6.70011 -4.50259 1.67365 2.41163 2.42405 2.87617 2.96835 3.00972 3.02382 3.18955 3.78734 4.28755 4.94780 4.97388 5.39748 5.53680 6.08651 6.25667 6.29084 6.31335 6.44770 6.50653 6.70689 6.86144 6.95713 7.10311 7.26594 7.45820 7.70310 7.92141 8.17362 8.21905 8.50304 8.62451 9.02038 9.93280 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.029827 B = 0.008112 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.505997 B = 3450.918180 C = 4234.485338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.319 6.319 3 C -0.011 4.011 4 C -0.074 4.074 5 C 0.117 3.883 6 O -0.481 6.481 7 C -0.249 4.249 8 S 0.034 5.966 9 C -0.214 4.214 10 C -0.082 4.082 11 C -0.112 4.112 12 C 0.101 3.899 13 C -0.434 4.434 14 H 0.090 0.910 15 C 0.072 3.928 16 N -0.787 5.787 17 Si 0.915 3.085 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.259 1.259 21 H 0.038 0.962 22 H 0.030 0.970 23 H 0.069 0.931 24 H 0.382 0.618 25 H 0.155 0.845 26 H 0.099 0.901 27 H 0.132 0.868 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.169 -1.444 -4.317 4.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.235 6.235 3 C -0.059 4.059 4 C -0.080 4.080 5 C 0.059 3.941 6 O -0.290 6.290 7 C -0.383 4.383 8 S 0.293 5.707 9 C -0.328 4.328 10 C -0.104 4.104 11 C -0.133 4.133 12 C 0.096 3.904 13 C -0.462 4.462 14 H 0.108 0.892 15 C -0.147 4.147 16 N -0.411 5.411 17 Si 0.739 3.261 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.183 1.183 21 H 0.057 0.943 22 H 0.049 0.951 23 H 0.087 0.913 24 H 0.236 0.764 25 H 0.173 0.827 26 H 0.118 0.882 27 H 0.149 0.851 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.300 0.177 -4.828 5.003 hybrid contribution -0.526 -1.522 1.231 2.027 sum 0.774 -1.345 -3.597 3.917 Atomic orbital electron populations 1.22714 0.82630 1.00435 0.99557 1.85861 1.17771 1.25821 1.94034 1.18235 1.07209 0.90955 0.89525 1.19296 1.02094 0.94488 0.92139 1.18243 0.97347 0.88193 0.90353 1.84815 1.35543 1.16143 1.92503 1.24732 1.10345 1.00918 1.02324 1.83310 1.65915 1.22772 0.98735 1.21607 1.16180 0.99579 0.95439 1.19848 1.01703 0.98612 0.90280 1.21011 0.98762 0.96905 0.96582 1.17708 0.89749 0.91079 0.91829 1.19549 1.39463 0.95772 0.91432 0.89226 1.26044 0.91921 0.94673 1.02050 1.69880 1.32005 1.06980 1.32244 0.86172 0.79343 0.80522 0.80031 1.18972 1.20156 1.18282 0.94292 0.95101 0.91292 0.76367 0.82732 0.88247 0.85068 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.86 11.13 101.05 1.12 1.99 15 2 O -0.32 -7.56 8.98 -23.41 -0.21 -7.77 15 3 C -0.01 -0.28 5.82 -37.54 -0.22 -0.49 15 4 C -0.07 -1.75 6.04 -105.20 -0.64 -2.38 15 5 C 0.12 2.41 6.89 -38.52 -0.27 2.15 15 6 O -0.48 -8.90 12.96 -25.42 -0.33 -9.23 15 7 C -0.25 -4.59 10.98 28.81 0.32 -4.28 15 8 S 0.03 0.65 23.23 -107.50 -2.50 -1.85 15 9 C -0.21 -4.86 6.50 -38.06 -0.25 -5.11 15 10 C -0.08 -1.87 9.98 -39.60 -0.40 -2.27 15 11 C -0.11 -2.75 8.60 -39.45 -0.34 -3.09 15 12 C 0.10 2.61 5.56 -106.84 -0.59 2.01 15 13 C -0.43 -11.01 8.68 -37.97 -0.33 -11.34 15 14 H 0.09 2.27 7.62 -52.49 -0.40 1.87 15 15 C 0.07 1.71 5.12 -17.34 -0.09 1.62 15 16 N -0.79 -18.98 10.98 55.54 0.61 -18.37 15 17 Si 0.92 17.71 29.59 -169.99 -5.03 12.68 15 18 H -0.26 -5.06 7.11 56.52 0.40 -4.65 15 19 H -0.28 -5.23 7.11 56.52 0.40 -4.83 15 20 H -0.26 -5.02 7.11 56.52 0.40 -4.62 15 21 H 0.04 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.03 0.64 8.14 -51.93 -0.42 0.21 15 23 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 24 H 0.38 5.41 9.07 45.56 0.41 5.82 15 25 H 0.16 2.37 8.06 -52.49 -0.42 1.95 15 26 H 0.10 2.01 8.06 -52.49 -0.42 1.58 15 27 H 0.13 3.23 6.17 -52.49 -0.32 2.90 15 28 H 0.29 6.22 8.30 -40.82 -0.34 5.88 15 LS Contribution 264.07 15.07 3.98 3.98 Total: -1.00 -27.72 264.07 -6.71 -34.43 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -1.56 Total: 7.31 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -1.67 Total: -21.19 kcal Atomic # 7 Polarization: -18.98 SS G_CDS: 0.61 Total: -18.37 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.54 Total: -17.00 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -2.50 Total: -1.85 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.72 -6.71 -34.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396386210.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.839 kcal (2) G-P(sol) polarization free energy of solvation -27.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds