Wall clock time and date at job start Mon Mar 30 2020 05:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35912 * 116.99979 * 2 1 4 4 C 1.38076 * 119.81974 * 0.02562 * 3 2 1 5 5 C 1.38984 * 120.07881 * 179.97438 * 4 3 2 6 6 O 1.35962 * 119.91007 * 180.02562 * 5 4 3 7 7 C 1.37959 * 120.18553 * 0.02562 * 5 4 3 8 8 C 1.40665 * 120.38010 * 0.02842 * 7 5 4 9 9 C 1.46663 * 129.43326 * 180.02562 * 8 7 5 10 10 C 1.40802 * 123.29967 * 359.93103 * 9 8 7 11 11 H 1.08000 * 120.00119 * 22.20991 * 10 9 8 12 12 C 1.39689 * 119.99688 * 202.21337 * 10 9 8 13 13 N 1.31094 * 120.00289 * 10.94866 * 12 10 9 14 14 Si 1.86804 * 119.99805 * 190.94469 * 12 10 9 15 15 H 1.48497 * 109.47015 * 60.00256 * 14 12 10 16 16 H 1.48499 * 109.46993 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47351 * 300.00128 * 14 12 10 18 18 C 1.36460 * 113.39138 * 179.21837 * 9 8 7 19 19 S 1.69980 * 111.93184 * 0.65954 * 18 9 8 20 20 C 1.39221 * 119.32208 * 359.67668 * 8 7 5 21 21 H 1.09000 * 109.46887 * 299.99269 * 1 2 3 22 22 H 1.09000 * 109.47507 * 59.99590 * 1 2 3 23 23 H 1.09005 * 109.46720 * 179.97438 * 1 2 3 24 24 H 1.07997 * 119.96165 * 359.97438 * 4 3 2 25 25 H 0.96700 * 113.99987 * 89.99438 * 6 5 4 26 26 H 1.08003 * 119.81218 * 180.02562 * 7 5 4 27 27 H 0.97001 * 120.00223 * 180.02562 * 13 12 10 28 28 H 1.08001 * 124.03357 * 180.13640 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2904 2.3666 0.0005 5 6 1.9157 3.6078 0.0011 6 8 1.1683 4.7435 0.0021 7 6 3.2928 3.6907 0.0005 8 6 4.0758 2.5221 -0.0011 9 6 5.5355 2.3788 -0.0015 10 6 6.4198 3.4745 -0.0014 11 1 6.0852 4.4385 0.3524 12 6 7.7299 3.3146 -0.4591 13 7 8.0763 2.2156 -1.0843 14 14 8.9882 4.6668 -0.1803 15 1 9.1439 4.9052 1.2771 16 1 10.2934 4.2547 -0.7562 17 1 8.5277 5.9151 -0.8396 18 6 5.9522 1.0795 0.0138 19 16 4.6448 -0.0067 0.0107 20 6 3.4470 1.2801 0.0046 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 0.2121 2.3060 0.0005 25 1 0.9524 5.0715 0.8858 26 1 3.7725 4.6584 0.0014 27 1 8.9861 2.1044 -1.4018 28 1 6.9891 0.7773 0.0181 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396386697.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:50 Heat of formation + Delta-G solvation = -68.652710 kcal Electronic energy + Delta-G solvation = -15534.121354 eV Core-core repulsion = 12833.802360 eV Total energy + Delta-G solvation = -2700.318994 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.20330 -39.29213 -38.18008 -35.88426 -33.54991 -30.83775 -29.89234 -28.41844 -27.35025 -24.06023 -23.20208 -21.54996 -19.68929 -18.62161 -18.19334 -17.71838 -17.04069 -16.68863 -16.62024 -15.76936 -15.61203 -15.13712 -14.57234 -14.12769 -13.72728 -13.56883 -13.17768 -12.82251 -12.76498 -12.49831 -12.31409 -12.10152 -11.99619 -11.54558 -11.38999 -11.19984 -10.98957 -9.76936 -9.20004 -8.58502 -8.32293 -6.27614 0.05283 0.29898 1.12320 1.31290 1.38611 1.50477 1.87005 1.95862 2.23081 2.34643 2.62565 3.27993 3.35283 3.92080 4.19554 4.21119 4.44060 4.44601 4.62144 4.75144 4.84727 5.03159 5.21381 5.25727 5.42998 5.52586 5.80381 5.96407 6.36078 6.50341 6.81516 6.91393 6.92907 8.41548 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.027488 B = 0.007610 C = 0.006041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.378008 B = 3678.311404 C = 4634.060724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.167 3.833 4 C -0.229 4.229 5 C 0.135 3.865 6 O -0.497 6.497 7 C -0.154 4.154 8 C -0.044 4.044 9 C 0.049 3.951 10 C -0.466 4.466 11 H 0.079 0.921 12 C 0.024 3.976 13 N -0.836 5.836 14 Si 0.989 3.011 15 H -0.260 1.260 16 H -0.271 1.271 17 H -0.259 1.259 18 C -0.375 4.375 19 S 0.075 5.925 20 C -0.200 4.200 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.123 0.877 24 H 0.169 0.831 25 H 0.410 0.590 26 H 0.125 0.875 27 H 0.283 0.717 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.117 0.790 3.362 12.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.116 3.884 4 C -0.250 4.250 5 C 0.087 3.913 6 O -0.310 6.310 7 C -0.175 4.175 8 C -0.055 4.055 9 C 0.040 3.960 10 C -0.499 4.499 11 H 0.097 0.903 12 C -0.189 4.189 13 N -0.463 5.463 14 Si 0.810 3.190 15 H -0.184 1.184 16 H -0.195 1.195 17 H -0.183 1.183 18 C -0.511 4.511 19 S 0.338 5.662 20 C -0.315 4.315 21 H 0.089 0.911 22 H 0.084 0.916 23 H 0.141 0.859 24 H 0.186 0.814 25 H 0.269 0.731 26 H 0.143 0.857 27 H 0.094 0.906 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.776 -1.166 2.644 12.125 hybrid contribution 0.959 2.077 0.363 2.316 sum -10.816 0.910 3.007 11.263 Atomic orbital electron populations 1.23428 0.75910 1.05833 1.02590 1.86082 1.23966 1.26040 1.88396 1.18039 0.88392 0.85415 0.96525 1.21255 1.01170 0.90151 1.12470 1.17652 0.87965 0.85983 0.99699 1.84758 1.71407 1.39500 1.35355 1.21083 0.93138 0.97346 1.05883 1.19491 0.93874 0.92154 0.99945 1.17728 0.88753 0.93972 0.95539 1.19231 0.95949 0.96364 1.38350 0.90321 1.26729 1.00835 0.99253 0.92079 1.69949 1.20265 1.27916 1.28186 0.85144 0.76333 0.77897 0.79667 1.18416 1.19548 1.18300 1.24440 1.01202 0.96240 1.29205 1.81583 0.94343 1.09112 1.81176 1.22187 0.95227 0.98555 1.15548 0.91060 0.91601 0.85922 0.81361 0.73124 0.85739 0.90617 0.84137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.80 113.37 1.11 1.43 15 2 O -0.33 -10.95 10.46 -92.55 -0.97 -11.92 15 3 C 0.17 6.37 6.72 22.73 0.15 6.52 15 4 C -0.23 -7.35 8.95 22.41 0.20 -7.15 15 5 C 0.14 4.68 6.68 22.38 0.15 4.83 15 6 O -0.50 -13.56 13.50 -93.13 -1.26 -14.81 15 7 C -0.15 -6.55 9.79 22.80 0.22 -6.33 15 8 C -0.04 -2.19 6.02 -20.25 -0.12 -2.31 15 9 C 0.05 2.77 5.69 -20.87 -0.12 2.66 15 10 C -0.47 -25.82 9.07 23.25 0.21 -25.60 15 11 H 0.08 4.11 7.68 -2.91 -0.02 4.09 15 12 C 0.02 1.23 5.36 85.15 0.46 1.69 15 13 N -0.84 -46.03 10.81 21.79 0.24 -45.80 15 14 Si 0.99 39.68 29.57 68.60 2.03 41.71 15 15 H -0.26 -10.10 7.11 99.48 0.71 -9.39 15 16 H -0.27 -10.39 7.11 99.48 0.71 -9.68 15 17 H -0.26 -9.97 7.11 99.48 0.71 -9.26 15 18 C -0.37 -21.00 9.52 67.40 0.64 -20.36 15 19 S 0.07 3.59 22.92 -56.49 -1.29 2.29 15 20 C -0.20 -9.33 6.39 23.00 0.15 -9.19 15 21 H 0.07 1.16 7.65 -2.39 -0.02 1.14 15 22 H 0.07 1.16 7.65 -2.39 -0.02 1.14 15 23 H 0.12 1.76 8.14 -2.38 -0.02 1.75 15 24 H 0.17 3.97 6.24 -2.91 -0.02 3.95 15 25 H 0.41 6.55 9.06 -74.06 -0.67 5.88 15 26 H 0.12 5.18 7.87 -2.91 -0.02 5.16 15 27 H 0.28 14.24 8.30 -92.71 -0.77 13.47 15 28 H 0.14 8.38 6.27 -2.91 -0.02 8.36 15 Total: -1.00 -68.08 261.44 2.34 -65.75 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.54 Total: 16.60 kcal Atomic # 6 Polarization: -56.87 SS G_CDS: 3.05 Total: -53.82 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.24 Total: -45.80 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -2.23 Total: -26.73 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.29 Total: 2.29 kcal Total: -68.08 2.34 -65.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396386697.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.908 kcal (2) G-P(sol) polarization free energy of solvation -68.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds