Wall clock time and date at job start Mon Mar 30 2020 05:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35953 * 116.99613 * 2 1 4 4 C 1.36016 * 119.54415 * 5.70958 * 3 2 1 5 5 C 1.41038 * 120.11571 * 179.69296 * 4 3 2 6 6 C 1.41006 * 120.09601 * 180.27196 * 5 4 3 7 7 H 1.07994 * 120.00629 * 149.03541 * 6 5 4 8 8 C 1.39733 * 119.99998 * 329.02881 * 6 5 4 9 9 N 1.31014 * 120.00487 * 166.42606 * 8 6 5 10 10 Si 1.86810 * 119.99852 * 346.43083 * 8 6 5 11 11 H 1.48497 * 109.46888 * 93.35454 * 10 8 6 12 12 H 1.48497 * 109.46655 * 213.35416 * 10 8 6 13 13 H 1.48499 * 109.46656 * 333.35153 * 10 8 6 14 14 C 1.40694 * 119.81206 * 0.59016 * 5 4 3 15 15 O 1.35547 * 120.03402 * 179.71793 * 14 5 4 16 16 C 1.41304 * 119.93090 * 359.70007 * 14 5 4 17 17 C 1.45488 * 129.09712 * 180.02562 * 16 14 5 18 18 C 1.31790 * 114.87278 * 179.97438 * 17 16 14 19 19 S 1.75268 * 111.41391 * 0.02562 * 18 17 16 20 20 C 1.39716 * 119.02542 * 0.02562 * 16 14 5 21 21 H 1.08996 * 109.47222 * 295.44200 * 1 2 3 22 22 H 1.09004 * 109.47127 * 55.44492 * 1 2 3 23 23 H 1.09008 * 109.46947 * 175.44038 * 1 2 3 24 24 H 1.08000 * 119.94053 * 0.02562 * 4 3 2 25 25 H 0.97000 * 120.00417 * 180.02562 * 9 8 6 26 26 H 0.96698 * 114.00851 * 269.98345 * 15 14 5 27 27 H 1.08010 * 122.56456 * 359.95999 * 17 16 14 28 28 H 1.08003 * 124.29473 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.3015 2.3435 0.1177 5 6 1.9297 3.6062 0.1256 6 6 1.1578 4.7792 0.2535 7 1 1.5720 5.6475 0.7441 8 6 -0.1432 4.8183 -0.2549 9 7 -0.9513 5.7911 0.0873 10 14 -0.7302 3.4834 -1.4225 11 1 -1.4068 2.4116 -0.6488 12 1 -1.6842 4.0657 -2.4003 13 1 0.4337 2.9122 -2.1464 14 6 3.3283 3.6924 -0.0011 15 8 3.9362 4.9039 0.0002 16 6 4.0985 2.5147 -0.1294 17 6 5.5394 2.3716 -0.2706 18 6 5.9660 1.1285 -0.3694 19 16 4.6366 -0.0116 -0.3004 20 6 3.4501 1.2771 -0.1283 21 1 -0.3633 0.4415 0.9280 22 1 -0.3633 0.5829 -0.8464 23 1 -0.3633 -1.0245 -0.0817 24 1 0.2276 2.2751 0.2107 25 1 -1.8545 5.8180 -0.2654 26 1 4.0307 5.2976 -0.8780 27 1 6.2084 3.2193 -0.2929 28 1 7.0032 0.8480 -0.4791 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396386775.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:03 Heat of formation + Delta-G solvation = -61.792513 kcal Electronic energy + Delta-G solvation = -16013.145896 eV Core-core repulsion = 13313.124382 eV Total energy + Delta-G solvation = -2700.021514 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.12664 -39.35472 -37.16688 -36.42918 -34.64072 -31.64528 -29.45565 -28.57905 -26.89615 -24.32547 -22.66059 -21.55500 -19.83482 -19.28441 -18.56794 -17.64601 -16.93663 -16.73477 -16.43473 -16.10132 -15.49493 -15.28640 -14.60279 -14.24789 -14.09037 -13.67793 -13.54819 -12.98633 -12.81738 -12.76092 -12.43898 -12.21269 -11.90322 -11.80217 -11.53756 -11.02558 -10.78271 -9.88501 -9.36766 -9.00082 -8.33872 -6.55071 -0.05085 0.44763 0.86461 1.11628 1.29096 1.30348 1.36615 1.53225 2.01133 2.31287 2.41617 3.16915 3.79262 3.87484 4.12946 4.21211 4.24972 4.49920 4.56922 4.63346 4.67304 4.99225 5.04834 5.10836 5.24778 5.50725 5.66288 5.83918 6.09580 6.31638 6.49029 6.64017 7.25354 8.07329 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.010441 C = 0.007669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.291201 B = 2681.113791 C = 3650.287587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.329 6.329 3 C 0.180 3.820 4 C -0.290 4.290 5 C 0.082 3.918 6 C -0.454 4.454 7 H 0.063 0.937 8 C 0.049 3.951 9 N -0.836 5.836 10 Si 0.953 3.047 11 H -0.241 1.241 12 H -0.272 1.272 13 H -0.257 1.257 14 C -0.030 4.030 15 O -0.491 6.491 16 C -0.037 4.037 17 C -0.136 4.136 18 C -0.171 4.171 19 S 0.070 5.930 20 C -0.266 4.266 21 H 0.055 0.945 22 H 0.045 0.955 23 H 0.137 0.863 24 H 0.125 0.875 25 H 0.298 0.702 26 H 0.375 0.625 27 H 0.157 0.843 28 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.830 -10.007 -3.972 11.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.131 3.869 4 C -0.311 4.311 5 C 0.078 3.922 6 C -0.483 4.483 7 H 0.082 0.918 8 C -0.167 4.167 9 N -0.462 5.462 10 Si 0.776 3.224 11 H -0.166 1.166 12 H -0.198 1.198 13 H -0.181 1.181 14 C -0.079 4.079 15 O -0.300 6.300 16 C -0.044 4.044 17 C -0.167 4.167 18 C -0.305 4.305 19 S 0.329 5.671 20 C -0.380 4.380 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.155 0.845 24 H 0.143 0.857 25 H 0.109 0.891 26 H 0.229 0.771 27 H 0.175 0.825 28 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 4.662 -11.669 -3.406 13.019 hybrid contribution -0.812 2.050 -0.573 2.279 sum 3.850 -9.619 -3.980 11.099 Atomic orbital electron populations 1.23424 0.77270 1.05731 1.01409 1.85963 1.22667 1.26788 1.88861 1.17790 0.89603 0.84222 0.95256 1.20741 0.99417 0.91929 1.19032 1.17712 0.91993 0.92540 0.89988 1.19216 0.97113 0.99017 1.32967 0.91847 1.26837 0.95156 0.98184 0.96517 1.69753 1.07754 1.31867 1.36811 0.85763 0.79032 0.78656 0.78930 1.16588 1.19802 1.18121 1.18238 0.89683 0.83320 1.16677 1.84662 1.79730 1.31819 1.33757 1.19501 0.93746 0.91627 0.99575 1.21000 0.92059 0.98716 1.04943 1.25396 1.03786 0.95442 1.05839 1.83431 0.95058 1.08049 1.80520 1.21533 0.94262 0.97487 1.24755 0.92612 0.93590 0.84456 0.85726 0.89129 0.77069 0.82509 0.78031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.80 113.37 1.11 1.60 15 2 O -0.33 -12.77 10.47 -93.02 -0.97 -13.74 15 3 C 0.18 8.04 6.67 22.46 0.15 8.19 15 4 C -0.29 -13.80 5.91 22.44 0.13 -13.67 15 5 C 0.08 4.27 5.12 -21.31 -0.11 4.17 15 6 C -0.45 -25.21 9.16 23.31 0.21 -24.99 15 7 H 0.06 3.87 7.90 -2.91 -0.02 3.85 15 8 C 0.05 2.55 5.45 85.18 0.46 3.01 15 9 N -0.84 -44.23 13.94 21.80 0.30 -43.93 15 10 Si 0.95 40.26 23.39 68.60 1.60 41.86 15 11 H -0.24 -9.04 5.97 99.48 0.59 -8.45 15 12 H -0.27 -10.71 7.11 99.48 0.71 -10.00 15 13 H -0.26 -11.39 6.71 99.48 0.67 -10.73 15 14 C -0.03 -1.47 6.81 23.62 0.16 -1.31 15 15 O -0.49 -22.14 12.71 -88.53 -1.13 -23.26 15 16 C -0.04 -1.61 6.03 -20.30 -0.12 -1.73 15 17 C -0.14 -4.66 10.27 23.38 0.24 -4.42 15 18 C -0.17 -4.93 11.01 67.06 0.74 -4.19 15 19 S 0.07 2.35 23.20 -56.49 -1.31 1.04 15 20 C -0.27 -11.50 6.45 23.34 0.15 -11.35 15 21 H 0.06 1.68 7.64 -2.39 -0.02 1.66 15 22 H 0.05 1.44 5.79 -2.39 -0.01 1.42 15 23 H 0.14 2.92 8.14 -2.38 -0.02 2.90 15 24 H 0.13 5.64 2.72 -2.91 -0.01 5.63 15 25 H 0.30 14.00 8.30 -92.71 -0.77 13.23 15 26 H 0.37 13.66 9.06 -74.06 -0.67 12.99 15 27 H 0.16 4.63 8.06 -2.91 -0.02 4.61 15 28 H 0.20 3.88 8.06 -2.91 -0.02 3.86 15 Total: -1.00 -63.76 251.85 2.03 -61.74 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.40 Total: 20.98 kcal Atomic # 6 Polarization: -47.82 SS G_CDS: 3.13 Total: -44.69 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.30 Total: -43.93 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -2.10 Total: -37.00 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 1.60 Total: 41.86 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.31 Total: 1.04 kcal Total: -63.76 2.03 -61.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396386775.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.056 kcal (2) G-P(sol) polarization free energy of solvation -63.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds