Wall clock time and date at job start Mon Mar 30 2020 05:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36129 * 116.99798 * 2 1 4 4 C 1.33089 * 122.16458 * 359.97438 * 3 2 1 5 5 S 1.75499 * 110.62718 * 180.28604 * 4 3 2 6 6 C 1.76063 * 91.56126 * 359.65095 * 5 4 3 7 7 C 1.39525 * 109.41967 * 0.34503 * 6 5 4 8 8 C 1.47895 * 118.13204 * 179.76958 * 7 6 5 9 9 C 1.40473 * 120.33703 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00171 * 333.00335 * 9 8 7 11 11 C 1.39827 * 119.99781 * 153.00720 * 9 8 7 12 12 N 1.30958 * 120.00385 * 343.87127 * 11 9 8 13 13 Si 1.86803 * 120.00207 * 163.87821 * 11 9 8 14 14 H 1.48499 * 109.47189 * 94.83505 * 13 11 9 15 15 H 1.48496 * 109.47285 * 214.84490 * 13 11 9 16 16 H 1.48505 * 109.46800 * 334.84319 * 13 11 9 17 17 C 1.40444 * 119.32976 * 359.97438 * 8 7 6 18 18 C 1.37409 * 120.19636 * 359.97438 * 17 8 7 19 19 C 1.38835 * 121.00320 * 0.02569 * 18 17 8 20 20 O 1.35699 * 119.34519 * 180.02562 * 19 18 17 21 21 H 1.09002 * 109.46879 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47334 * 299.99985 * 1 2 3 23 23 H 1.09000 * 109.47139 * 60.00200 * 1 2 3 24 24 H 1.07997 * 124.68608 * 0.02562 * 4 3 2 25 25 H 0.97000 * 120.00277 * 179.97438 * 12 11 9 26 26 H 1.07993 * 119.90179 * 179.97438 * 17 8 7 27 27 H 1.08006 * 119.49406 * 180.02562 * 18 17 8 28 28 H 0.96703 * 113.99648 * 269.97554 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0470 1.2129 0.0000 4 6 1.3648 2.3557 -0.0005 5 16 2.4581 3.7285 -0.0085 6 6 3.8647 2.6696 -0.0004 7 6 3.4439 1.3393 0.0001 8 6 4.4771 0.2811 0.0013 9 6 4.1053 -1.0736 0.0012 10 1 3.1583 -1.3737 0.4249 11 6 4.9614 -2.0334 -0.5473 12 7 5.9427 -1.6639 -1.3318 13 14 4.7052 -3.8431 -0.1614 14 1 3.8894 -4.4673 -1.2338 15 1 6.0227 -4.5237 -0.0819 16 1 3.9997 -3.9770 1.1385 17 6 5.8338 0.6442 0.0015 18 6 6.1943 1.9702 -0.0001 19 6 5.2336 2.9725 -0.0012 20 8 5.6274 4.2711 -0.0033 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.2872 2.4282 -0.0006 25 1 6.5368 -2.3297 -1.7121 26 1 6.5959 -0.1209 0.0028 27 1 7.2410 2.2366 -0.0003 28 1 5.7414 4.6488 0.8796 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396386783.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:23 Heat of formation + Delta-G solvation = -62.801467 kcal Electronic energy + Delta-G solvation = -15851.676366 eV Core-core repulsion = 13151.611100 eV Total energy + Delta-G solvation = -2700.065265 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.75134 -39.38698 -37.47970 -35.82824 -34.08714 -31.12039 -29.70672 -28.37578 -26.71989 -23.89589 -23.01497 -21.20657 -19.81203 -19.23226 -17.64319 -17.45730 -16.77869 -16.58646 -16.49395 -15.91564 -15.52593 -15.03717 -14.38219 -13.87590 -13.70482 -13.43001 -13.28480 -13.00138 -12.85388 -12.44453 -12.20919 -11.95306 -11.93110 -11.50596 -11.34026 -11.19333 -10.94511 -9.66833 -9.22767 -8.84898 -8.25860 -6.35587 0.08702 0.72499 0.92233 1.34740 1.38408 1.46686 1.55137 1.76506 2.15246 2.50708 2.69134 3.44305 3.81985 4.12076 4.34438 4.40086 4.43946 4.64130 4.73912 4.89634 4.98286 5.08130 5.23363 5.31343 5.53117 5.84845 5.88869 6.01249 6.46419 6.55039 6.69207 6.74477 7.18973 8.09545 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.020606 B = 0.010155 C = 0.006949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.501438 B = 2756.544565 C = 4028.473987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.317 6.317 3 C 0.166 3.834 4 C -0.382 4.382 5 S 0.073 5.927 6 C -0.099 4.099 7 C -0.228 4.228 8 C 0.126 3.874 9 C -0.431 4.431 10 H 0.095 0.905 11 C 0.033 3.967 12 N -0.794 5.794 13 Si 0.991 3.009 14 H -0.260 1.260 15 H -0.259 1.259 16 H -0.255 1.255 17 C -0.201 4.201 18 C -0.076 4.076 19 C -0.039 4.039 20 O -0.498 6.498 21 H 0.116 0.884 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.180 0.820 25 H 0.299 0.701 26 H 0.119 0.881 27 H 0.126 0.874 28 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.228 0.134 3.227 6.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.231 6.231 3 C 0.111 3.889 4 C -0.515 4.515 5 S 0.331 5.669 6 C -0.215 4.215 7 C -0.235 4.235 8 C 0.121 3.879 9 C -0.457 4.457 10 H 0.113 0.887 11 C -0.187 4.187 12 N -0.416 5.416 13 Si 0.810 3.190 14 H -0.185 1.185 15 H -0.183 1.183 16 H -0.178 1.178 17 C -0.223 4.223 18 C -0.097 4.097 19 C -0.091 4.091 20 O -0.307 6.307 21 H 0.135 0.865 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.197 0.803 25 H 0.111 0.889 26 H 0.137 0.863 27 H 0.143 0.857 28 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -5.315 1.302 2.432 5.988 hybrid contribution 0.060 -1.797 0.409 1.844 sum -5.255 -0.495 2.841 5.994 Atomic orbital electron populations 1.23277 0.77521 1.05007 1.01778 1.86215 1.22417 1.25913 1.88572 1.17599 0.90401 0.84864 0.96053 1.24610 1.03422 0.94454 1.29016 1.83074 0.93806 1.07709 1.82292 1.22749 0.97372 0.95962 1.05401 1.18643 0.91287 0.93119 1.20462 1.18819 0.90500 0.92023 0.86579 1.20028 1.04168 0.91454 1.30035 0.88747 1.27037 0.92789 1.07031 0.91799 1.69909 1.12879 1.39585 1.19266 0.85043 0.79488 0.74240 0.80206 1.18475 1.18265 1.17826 1.20938 0.95657 0.94789 1.10890 1.20988 0.98229 0.92464 0.98000 1.17072 0.87957 0.83718 1.20357 1.84796 1.89474 1.23030 1.33390 0.86531 0.91963 0.92397 0.80307 0.88935 0.86310 0.85659 0.76962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.91 113.37 1.12 1.66 15 2 O -0.32 -13.50 8.37 -95.01 -0.79 -14.30 15 3 C 0.17 7.67 6.64 21.61 0.14 7.81 15 4 C -0.38 -15.25 9.98 66.66 0.67 -14.58 15 5 S 0.07 2.96 23.26 -56.49 -1.31 1.64 15 6 C -0.10 -4.83 6.42 23.06 0.15 -4.69 15 7 C -0.23 -11.86 6.02 -19.92 -0.12 -11.98 15 8 C 0.13 6.82 5.74 -19.64 -0.11 6.71 15 9 C -0.43 -22.34 8.48 23.20 0.20 -22.14 15 10 H 0.09 4.84 6.30 -2.91 -0.02 4.82 15 11 C 0.03 1.55 5.15 85.21 0.44 1.99 15 12 N -0.79 -38.65 11.01 21.81 0.24 -38.41 15 13 Si 0.99 35.24 29.59 68.60 2.03 37.27 15 14 H -0.26 -8.96 7.11 99.48 0.71 -8.25 15 15 H -0.26 -8.57 7.11 99.48 0.71 -7.86 15 16 H -0.25 -8.94 7.11 99.48 0.71 -8.23 15 17 C -0.20 -10.37 8.63 22.61 0.20 -10.17 15 18 C -0.08 -3.58 9.88 22.22 0.22 -3.36 15 19 C -0.04 -1.85 6.72 22.89 0.15 -1.69 15 20 O -0.50 -20.16 13.43 -90.19 -1.21 -21.37 15 21 H 0.12 2.67 8.14 -2.39 -0.02 2.65 15 22 H 0.06 1.57 7.82 -2.39 -0.02 1.55 15 23 H 0.06 1.51 7.82 -2.39 -0.02 1.50 15 24 H 0.18 5.80 6.90 -2.91 -0.02 5.78 15 25 H 0.30 12.87 8.30 -92.71 -0.77 12.10 15 26 H 0.12 6.14 6.25 -2.91 -0.02 6.13 15 27 H 0.13 5.16 8.06 -2.91 -0.02 5.14 15 28 H 0.38 11.47 9.06 -74.06 -0.67 10.80 15 Total: -1.00 -62.03 259.20 2.55 -59.49 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.54 Total: 26.12 kcal Atomic # 6 Polarization: -53.49 SS G_CDS: 3.05 Total: -50.44 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.24 Total: -38.41 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -2.01 Total: -35.67 kcal Atomic # 14 Polarization: 35.24 SS G_CDS: 2.03 Total: 37.27 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.31 Total: 1.64 kcal Total: -62.03 2.55 -59.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396386783.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.314 kcal (2) G-P(sol) polarization free energy of solvation -62.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds