Wall clock time and date at job start Mon Mar 30 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35692 * 117.00327 * 2 1 4 4 C 1.39509 * 120.03831 * 90.00043 * 3 2 1 5 5 S 1.76076 * 130.35462 * 359.72762 * 4 3 2 6 6 C 1.75475 * 91.53360 * 180.02562 * 5 4 3 7 7 C 1.32455 * 110.79209 * 359.97438 * 6 5 4 8 8 C 1.40002 * 120.23395 * 179.72723 * 4 3 2 9 9 C 1.42124 * 119.11873 * 0.02562 * 8 4 3 10 10 C 1.35598 * 120.98473 * 0.02562 * 9 8 4 11 11 O 1.35869 * 119.84815 * 179.97438 * 10 9 8 12 12 C 1.40885 * 120.04406 * 269.72781 * 3 2 1 13 13 C 1.40750 * 120.28274 * 0.25583 * 12 3 2 14 14 H 1.08002 * 119.99858 * 318.68461 * 13 12 3 15 15 C 1.39830 * 120.00042 * 138.67641 * 13 12 3 16 16 N 1.30992 * 119.99765 * 157.60861 * 15 13 12 17 17 Si 1.86795 * 120.00163 * 337.61380 * 15 13 12 18 18 H 1.48505 * 109.47397 * 94.58466 * 17 15 13 19 19 H 1.48501 * 109.47224 * 214.57904 * 17 15 13 20 20 H 1.48497 * 109.47191 * 334.57823 * 17 15 13 21 21 H 1.09001 * 109.47109 * 59.99444 * 1 2 3 22 22 H 1.08994 * 109.47354 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46835 * 299.99848 * 1 2 3 24 24 H 1.07998 * 124.60319 * 179.97438 * 6 5 4 25 25 H 1.07995 * 122.06132 * 180.02562 * 7 6 5 26 26 H 1.07999 * 119.50370 * 180.02562 * 9 8 4 27 27 H 0.96705 * 114.00164 * 84.96648 * 11 10 9 28 28 H 0.97000 * 119.99641 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 2.3622 1.8312 1.2077 5 16 2.0882 1.3077 2.8664 6 6 2.8353 2.7639 3.4992 7 6 3.2428 3.5496 2.5139 8 6 3.0030 3.0760 1.2125 9 6 3.3236 3.6935 -0.0267 10 6 3.0176 3.0954 -1.2046 11 8 3.3343 3.7068 -2.3758 12 6 2.3705 1.8348 -1.2195 13 6 2.0545 1.2138 -2.4425 14 1 2.2023 0.1507 -2.5623 15 6 1.5490 1.9733 -3.5022 16 7 1.6615 1.5375 -4.7323 17 14 0.7133 3.6092 -3.1636 18 1 1.7023 4.7084 -3.3022 19 1 -0.3909 3.8116 -4.1357 20 1 0.1642 3.6084 -1.7839 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 2.9476 2.9888 4.5495 25 1 3.7294 4.4958 2.6990 26 1 3.8183 4.6536 -0.0303 27 1 4.2390 3.5405 -2.6743 28 1 1.3112 2.0645 -5.4675 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396386816.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:05 Heat of formation + Delta-G solvation = -56.892978 kcal Electronic energy + Delta-G solvation = -16185.755264 eV Core-core repulsion = 13485.946210 eV Total energy + Delta-G solvation = -2699.809054 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.92598 -38.85486 -38.10878 -35.61492 -34.33555 -31.33306 -30.31859 -27.84284 -26.62954 -24.09213 -22.83722 -21.54365 -19.97367 -18.89406 -18.09640 -17.63113 -17.28245 -16.57803 -16.18838 -15.72112 -15.33521 -15.13398 -14.77040 -14.39513 -14.05176 -13.66227 -13.30433 -12.93458 -12.85577 -12.70488 -12.25479 -12.08479 -11.54754 -11.29674 -11.14076 -11.02398 -10.68368 -10.22744 -9.19172 -8.93058 -8.46252 -6.47780 -0.03861 0.39621 0.82210 1.28342 1.32200 1.37213 1.43953 1.62957 2.22797 2.52658 2.96574 3.24746 3.73903 4.24222 4.33150 4.44885 4.52986 4.58914 4.65776 4.76219 4.88703 5.00582 5.15199 5.23920 5.50667 5.62793 5.76690 5.83946 6.12780 6.38299 6.68227 6.91728 7.12073 8.11097 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.027821 B = 0.010075 C = 0.008251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.175641 B = 2778.365169 C = 3392.540270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.338 6.338 3 C -0.014 4.014 4 C -0.122 4.122 5 S 0.043 5.957 6 C -0.227 4.227 7 C -0.095 4.095 8 C -0.171 4.171 9 C -0.081 4.081 10 C 0.024 3.976 11 O -0.486 6.486 12 C 0.050 3.950 13 C -0.454 4.454 14 H 0.058 0.942 15 C 0.081 3.919 16 N -0.829 5.829 17 Si 0.962 3.038 18 H -0.224 1.224 19 H -0.283 1.283 20 H -0.284 1.284 21 H 0.027 0.973 22 H 0.107 0.893 23 H 0.041 0.959 24 H 0.194 0.806 25 H 0.164 0.836 26 H 0.146 0.854 27 H 0.383 0.617 28 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.872 5.333 9.658 11.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.255 6.255 3 C -0.065 4.065 4 C -0.238 4.238 5 S 0.304 5.696 6 C -0.360 4.360 7 C -0.125 4.125 8 C -0.178 4.178 9 C -0.101 4.101 10 C -0.022 4.022 11 O -0.298 6.298 12 C 0.044 3.956 13 C -0.482 4.482 14 H 0.076 0.924 15 C -0.137 4.137 16 N -0.454 5.454 17 Si 0.787 3.213 18 H -0.148 1.148 19 H -0.210 1.210 20 H -0.209 1.209 21 H 0.046 0.954 22 H 0.126 0.874 23 H 0.059 0.941 24 H 0.211 0.789 25 H 0.182 0.818 26 H 0.164 0.836 27 H 0.241 0.759 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.259 4.112 10.146 10.950 hybrid contribution 0.514 1.202 -1.150 1.741 sum 0.254 5.314 8.996 10.451 Atomic orbital electron populations 1.22945 0.80549 1.03179 0.99441 1.85913 1.19792 1.25679 1.94125 1.17835 1.07193 0.91682 0.89774 1.23022 1.05332 0.98692 0.96753 1.83803 1.65748 1.24166 0.95861 1.25277 1.08818 0.97974 1.03916 1.20019 1.01452 1.01601 0.89399 1.18083 1.09819 0.95175 0.94731 1.20930 0.99605 0.99807 0.89798 1.18005 1.03587 0.94687 0.85890 1.85036 1.35972 1.71511 1.37311 1.18259 0.93272 0.91421 0.92675 1.18910 1.38843 0.96128 0.94365 0.92365 1.26564 0.93039 1.00949 0.93152 1.69803 1.34614 1.40284 1.00693 0.85466 0.77650 0.80578 0.77627 1.14794 1.21033 1.20922 0.95407 0.87432 0.94082 0.78941 0.81843 0.83644 0.75943 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.35 11.13 113.37 1.26 2.61 15 2 O -0.34 -16.33 9.83 -90.11 -0.89 -17.21 15 3 C -0.01 -0.68 5.77 23.22 0.13 -0.55 15 4 C -0.12 -5.35 6.41 23.00 0.15 -5.20 15 5 S 0.04 1.51 23.26 -56.49 -1.31 0.20 15 6 C -0.23 -6.49 11.09 66.70 0.74 -5.75 15 7 C -0.10 -2.94 10.13 21.71 0.22 -2.72 15 8 C -0.17 -6.73 5.88 -21.32 -0.13 -6.86 15 9 C -0.08 -3.17 9.90 22.62 0.22 -2.94 15 10 C 0.02 1.07 5.15 22.52 0.12 1.19 15 11 O -0.49 -19.96 8.43 -92.07 -0.78 -20.73 15 12 C 0.05 2.55 4.73 -21.16 -0.10 2.45 15 13 C -0.45 -25.04 8.86 23.27 0.21 -24.84 15 14 H 0.06 3.57 8.06 -2.91 -0.02 3.55 15 15 C 0.08 4.24 4.82 85.20 0.41 4.65 15 16 N -0.83 -43.85 13.94 21.82 0.30 -43.55 15 17 Si 0.96 43.74 24.76 68.60 1.70 45.44 15 18 H -0.22 -9.63 6.06 99.48 0.60 -9.03 15 19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 15 20 H -0.28 -13.79 7.11 99.48 0.71 -13.08 15 21 H 0.03 1.18 8.14 -2.39 -0.02 1.16 15 22 H 0.11 3.53 8.14 -2.39 -0.02 3.51 15 23 H 0.04 1.51 8.14 -2.39 -0.02 1.49 15 24 H 0.19 3.89 8.06 -2.91 -0.02 3.87 15 25 H 0.16 3.80 8.06 -2.91 -0.02 3.78 15 26 H 0.15 4.59 8.06 -2.91 -0.02 4.57 15 27 H 0.38 12.59 9.06 -74.05 -0.67 11.92 15 28 H 0.30 14.09 8.30 -92.71 -0.77 13.32 15 Total: -1.00 -62.89 258.38 2.69 -60.21 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.42 Total: 13.62 kcal Atomic # 6 Polarization: -41.20 SS G_CDS: 3.23 Total: -37.96 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.30 Total: -43.55 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -1.66 Total: -37.95 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.70 Total: 45.44 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -1.31 Total: 0.20 kcal Total: -62.89 2.69 -60.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396386816.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.314 kcal (2) G-P(sol) polarization free energy of solvation -62.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds