Wall clock time and date at job start Mon Mar 30 2020 05:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35920 * 117.00193 * 2 1 4 4 C 1.36215 * 119.61769 * 359.97438 * 3 2 1 5 5 C 1.41049 * 120.04398 * 179.97438 * 4 3 2 6 6 C 1.41247 * 120.03939 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00132 * 24.90933 * 6 5 4 8 8 C 1.39835 * 120.00124 * 204.91041 * 6 5 4 9 9 N 1.30905 * 119.99443 * 18.06446 * 8 6 5 10 10 Si 1.86795 * 120.00180 * 198.06693 * 8 6 5 11 11 H 1.48500 * 109.47450 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47280 * 120.00008 * 10 8 6 13 13 H 1.48499 * 109.47028 * 239.99824 * 10 8 6 14 14 C 1.39996 * 119.91500 * 0.02562 * 5 4 3 15 15 C 1.40594 * 120.08387 * 359.97438 * 14 5 4 16 16 C 1.45527 * 129.08666 * 180.02562 * 15 14 5 17 17 C 1.32426 * 114.75245 * 179.27101 * 16 15 14 18 18 O 1.35717 * 124.28417 * 180.14905 * 17 16 15 19 19 S 1.75251 * 111.42306 * 0.64318 * 17 16 15 20 20 C 1.40089 * 119.06805 * 359.78941 * 15 14 5 21 21 H 1.09000 * 109.47218 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47186 * 300.00139 * 1 2 3 23 23 H 1.08997 * 109.46993 * 60.00276 * 1 2 3 24 24 H 1.07995 * 119.97907 * 359.95627 * 4 3 2 25 25 H 0.97001 * 119.99746 * 180.02562 * 9 8 6 26 26 H 1.08007 * 119.95802 * 180.02562 * 14 5 4 27 27 H 1.08000 * 122.62191 * 359.95336 * 16 15 14 28 28 H 0.96702 * 113.99734 * 180.53579 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2966 2.3485 -0.0005 5 6 1.9277 3.6099 0.0000 6 6 1.1504 4.7893 -0.0011 7 1 0.1445 4.7735 0.3917 8 6 1.6834 5.9775 -0.5107 9 7 2.7316 5.9415 -1.2940 10 14 0.8997 7.6158 -0.0737 11 1 -0.2637 7.3853 0.8200 12 1 1.8955 8.4715 0.6201 13 1 0.4438 8.2930 -1.3142 14 6 3.3252 3.6915 0.0006 15 6 4.0997 2.5181 0.0011 16 6 5.5478 2.3744 0.0022 17 6 5.9809 1.1231 0.0178 18 8 7.2906 0.7674 0.0246 19 16 4.6486 -0.0154 0.0145 20 6 3.4526 1.2756 0.0056 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.2186 2.2844 -0.0017 25 1 3.1015 6.7657 -1.6473 26 1 3.8092 4.6571 0.0014 27 1 6.2170 3.2222 0.0020 28 1 7.4386 -0.1882 0.0278 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396387770.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:07 Heat of formation + Delta-G solvation = -44.719395 kcal Electronic energy + Delta-G solvation = -15497.038098 eV Core-core repulsion = 12797.756930 eV Total energy + Delta-G solvation = -2699.281168 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.04717 -37.97518 -36.62659 -34.37094 -32.32998 -29.37132 -27.72402 -26.84232 -25.24709 -22.17271 -21.22969 -19.77866 -18.73592 -17.48363 -16.18343 -15.62756 -15.37252 -15.04475 -14.98502 -14.12597 -13.99920 -13.45997 -13.27643 -12.69900 -12.19082 -11.95884 -11.64064 -11.47696 -11.21050 -10.83489 -10.66194 -10.55038 -10.31979 -9.96476 -9.67189 -9.61269 -8.88700 -8.11366 -7.28974 -6.90550 -6.53066 -4.49542 1.89286 2.11578 2.62357 2.85633 3.00810 3.03598 3.06728 3.40808 3.82405 4.05839 4.22596 4.44535 5.46575 5.58851 5.67137 5.85057 6.08044 6.22393 6.46036 6.53229 6.61454 6.79376 7.01033 7.10108 7.31782 7.56367 7.64289 7.76827 8.00042 8.15936 8.46101 8.70360 8.75928 10.02685 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022173 B = 0.007932 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.505373 B = 3529.101209 C = 4705.729828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.332 6.332 3 C 0.180 3.820 4 C -0.278 4.278 5 C 0.139 3.861 6 C -0.452 4.452 7 H 0.082 0.918 8 C 0.076 3.924 9 N -0.780 5.780 10 Si 0.911 3.089 11 H -0.259 1.259 12 H -0.270 1.270 13 H -0.273 1.273 14 C -0.168 4.168 15 C 0.000 4.000 16 C -0.168 4.168 17 C 0.035 3.965 18 O -0.452 6.452 19 S -0.005 6.005 20 C -0.256 4.256 21 H 0.086 0.914 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.111 0.889 25 H 0.284 0.716 26 H 0.126 0.874 27 H 0.136 0.864 28 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.464 -5.647 1.639 5.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.247 6.247 3 C 0.132 3.868 4 C -0.300 4.300 5 C 0.135 3.865 6 C -0.481 4.481 7 H 0.100 0.900 8 C -0.144 4.144 9 N -0.404 5.404 10 Si 0.734 3.266 11 H -0.183 1.183 12 H -0.195 1.195 13 H -0.199 1.199 14 C -0.190 4.190 15 C -0.005 4.005 16 C -0.199 4.199 17 C -0.124 4.124 18 O -0.256 6.256 19 S 0.248 5.752 20 C -0.371 4.371 21 H 0.104 0.896 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.129 0.871 25 H 0.095 0.905 26 H 0.144 0.856 27 H 0.153 0.847 28 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 0.799 -6.578 1.490 6.792 hybrid contribution -0.436 1.781 0.013 1.834 sum 0.363 -4.797 1.502 5.040 Atomic orbital electron populations 1.22836 0.79677 1.02208 1.01296 1.85939 1.20399 1.28716 1.89636 1.17563 0.88672 0.83556 0.97001 1.20736 0.98083 0.91984 1.19195 1.17151 0.91637 0.91332 0.86398 1.19578 1.00880 0.92624 1.34997 0.89955 1.25962 0.94436 1.01524 0.92498 1.69876 1.19211 1.30417 1.20885 0.86218 0.80218 0.80722 0.79395 1.18260 1.19476 1.19853 1.21081 0.92954 0.95174 1.09778 1.18488 0.89765 0.92665 0.99611 1.20378 0.94533 0.94774 1.10193 1.22280 0.85888 0.96930 1.07301 1.84788 1.19396 1.29204 1.92168 1.83556 0.96414 1.09591 1.85654 1.20667 0.92433 0.93961 1.29999 0.89579 0.93126 0.93030 0.87108 0.90518 0.85615 0.84657 0.75739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 9.80 101.05 0.99 1.54 15 2 O -0.33 -6.88 10.47 -19.49 -0.20 -7.09 15 3 C 0.18 4.22 6.68 -39.34 -0.26 3.96 15 4 C -0.28 -6.66 8.70 -39.24 -0.34 -7.00 15 5 C 0.14 3.60 5.56 -107.03 -0.59 3.01 15 6 C -0.45 -11.42 9.03 -37.84 -0.34 -11.76 15 7 H 0.08 1.97 7.91 -52.49 -0.41 1.56 15 8 C 0.08 1.81 5.12 -17.35 -0.09 1.72 15 9 N -0.78 -19.48 10.98 55.54 0.61 -18.87 15 10 Si 0.91 17.79 29.60 -169.99 -5.03 12.76 15 11 H -0.26 -4.99 7.11 56.52 0.40 -4.59 15 12 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 13 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 14 C -0.17 -4.36 8.75 -38.03 -0.33 -4.69 15 15 C 0.00 0.00 6.02 -105.41 -0.64 -0.63 15 16 C -0.17 -3.67 10.41 -38.60 -0.40 -4.08 15 17 C 0.04 0.68 7.50 28.81 0.22 0.90 15 18 O -0.45 -7.21 13.64 -18.86 -0.26 -7.47 15 19 S -0.01 -0.10 23.13 -107.50 -2.49 -2.59 15 20 C -0.26 -6.12 6.45 -37.92 -0.24 -6.36 15 21 H 0.09 1.05 8.14 -51.93 -0.42 0.63 15 22 H 0.05 0.76 7.63 -51.93 -0.40 0.36 15 23 H 0.05 0.79 7.63 -51.93 -0.40 0.39 15 24 H 0.11 2.40 6.16 -52.49 -0.32 2.07 15 25 H 0.28 6.40 8.30 -40.82 -0.34 6.06 15 26 H 0.13 3.34 6.15 -52.48 -0.32 3.02 15 27 H 0.14 2.78 8.06 -52.49 -0.42 2.36 15 28 H 0.39 4.15 9.00 45.56 0.41 4.56 15 LS Contribution 262.10 15.07 3.95 3.95 Total: -1.00 -29.07 262.10 -6.88 -35.95 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -1.42 Total: 6.74 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -2.04 Total: -23.39 kcal Atomic # 7 Polarization: -19.48 SS G_CDS: 0.61 Total: -18.87 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.46 Total: -14.55 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -2.49 Total: -2.59 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.07 -6.88 -35.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396387770.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.772 kcal (2) G-P(sol) polarization free energy of solvation -29.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds