Wall clock time and date at job start Mon Mar 30 2020 05:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35908 * 116.99829 * 2 1 4 4 C 1.39127 * 120.00636 * 359.97438 * 3 2 1 5 5 C 1.37254 * 120.19047 * 180.02562 * 4 3 2 6 6 C 1.40890 * 120.52187 * 0.23473 * 5 4 3 7 7 C 1.39301 * 119.15413 * 359.51812 * 6 5 4 8 8 C 1.38139 * 120.00376 * 180.02562 * 3 2 1 9 9 S 1.75884 * 110.63724 * 180.28967 * 7 6 5 10 10 C 1.75185 * 92.75591 * 359.68724 * 9 7 6 11 11 O 1.35255 * 124.56704 * 179.97438 * 10 9 7 12 12 C 1.37450 * 110.85789 * 0.43354 * 10 9 7 13 13 C 1.40669 * 123.22930 * 179.55201 * 12 10 9 14 14 H 1.07998 * 120.00305 * 213.85374 * 13 12 10 15 15 C 1.39524 * 120.00118 * 33.86127 * 13 12 10 16 16 N 1.31274 * 120.00139 * 20.40367 * 15 13 12 17 17 Si 1.86799 * 120.00158 * 200.40859 * 15 13 12 18 18 H 1.48495 * 109.47441 * 89.99305 * 17 15 13 19 19 H 1.48499 * 109.47371 * 209.99739 * 17 15 13 20 20 H 1.48507 * 109.47158 * 329.99673 * 17 15 13 21 21 H 1.09004 * 109.47515 * 60.00108 * 1 2 3 22 22 H 1.09004 * 109.47309 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47709 * 300.00322 * 1 2 3 24 24 H 1.08004 * 119.90005 * 0.02562 * 4 3 2 25 25 H 1.07999 * 119.73527 * 179.97438 * 5 4 3 26 26 H 1.07999 * 119.78222 * 359.97438 * 8 3 2 27 27 H 0.96703 * 113.99627 * 275.61165 * 11 10 9 28 28 H 0.97000 * 120.00222 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2883 2.3778 -0.0005 5 6 1.9074 3.6028 -0.0011 6 6 3.3134 3.6939 -0.0061 7 6 4.0693 2.5238 -0.0002 8 6 3.4254 1.2834 -0.0005 9 16 5.7882 2.8963 0.0002 10 6 5.5000 4.6242 -0.0170 11 8 6.4723 5.5644 -0.0233 12 6 4.1526 4.8957 -0.0130 13 6 3.6293 6.2014 -0.0153 14 1 2.7093 6.4154 0.5084 15 6 4.2987 7.2201 -0.6942 16 7 5.1603 6.9232 -1.6390 17 14 3.9690 9.0064 -0.2585 18 1 4.9090 9.4377 0.8071 19 1 4.1632 9.8536 -1.4625 20 1 2.5725 9.1480 0.2264 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.2098 2.3195 -0.0005 25 1 1.3121 4.5039 -0.0019 26 1 4.0103 0.3755 -0.0005 27 1 6.8127 5.7840 0.8548 28 1 5.6260 7.6314 -2.1108 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396388908.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:33 Heat of formation + Delta-G solvation = -58.566095 kcal Electronic energy + Delta-G solvation = -15565.555004 eV Core-core repulsion = 12865.673398 eV Total energy + Delta-G solvation = -2699.881606 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.96922 -39.06234 -37.79562 -35.42138 -33.51944 -32.01054 -29.54358 -27.82147 -27.15912 -23.67735 -23.25003 -21.39779 -19.58161 -18.90647 -18.15981 -17.06756 -16.80794 -16.59607 -16.51493 -16.08305 -15.15711 -14.68196 -14.64415 -14.26925 -13.93006 -13.63879 -13.46552 -12.91876 -12.75442 -12.57929 -12.30078 -12.23061 -11.83846 -11.48268 -11.00953 -10.86060 -10.49023 -9.97570 -8.81961 -8.58948 -8.33631 -6.24045 0.15394 0.32889 0.92896 1.32260 1.42255 1.53918 1.70376 1.84913 2.26870 2.47953 2.77988 3.30555 3.84554 4.00173 4.22786 4.33832 4.49355 4.54560 4.61724 4.71803 4.81191 4.97941 5.24864 5.32958 5.40208 5.48904 5.73368 5.86521 6.46988 6.51517 6.76220 6.94119 7.38957 8.46515 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.029377 B = 0.007354 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.909031 B = 3806.486355 C = 4628.619509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.134 3.866 4 C -0.202 4.202 5 C -0.044 4.044 6 C -0.124 4.124 7 C -0.094 4.094 8 C -0.147 4.147 9 S -0.028 6.028 10 C -0.170 4.170 11 O -0.425 6.425 12 C 0.065 3.935 13 C -0.475 4.475 14 H 0.082 0.918 15 C 0.043 3.957 16 N -0.791 5.791 17 Si 0.977 3.023 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.255 1.255 21 H 0.064 0.936 22 H 0.123 0.877 23 H 0.066 0.934 24 H 0.165 0.835 25 H 0.134 0.866 26 H 0.135 0.865 27 H 0.341 0.659 28 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.483 -6.641 3.571 11.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.086 3.914 4 C -0.223 4.223 5 C -0.063 4.063 6 C -0.132 4.132 7 C -0.209 4.209 8 C -0.172 4.172 9 S 0.230 5.770 10 C -0.329 4.329 11 O -0.228 6.228 12 C 0.054 3.946 13 C -0.507 4.507 14 H 0.100 0.900 15 C -0.175 4.175 16 N -0.415 5.415 17 Si 0.799 3.201 18 H -0.192 1.192 19 H -0.201 1.201 20 H -0.178 1.178 21 H 0.082 0.918 22 H 0.142 0.858 23 H 0.085 0.915 24 H 0.182 0.818 25 H 0.152 0.848 26 H 0.153 0.847 27 H 0.192 0.808 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.949 -7.514 2.759 10.600 hybrid contribution -0.794 1.860 0.395 2.061 sum -7.743 -5.654 3.155 10.093 Atomic orbital electron populations 1.23391 0.76212 1.05715 1.02426 1.86015 1.23659 1.25845 1.88835 1.18572 0.91183 0.84941 0.96699 1.21229 1.01200 0.90670 1.09210 1.20957 0.91735 0.98321 0.95314 1.19655 0.94892 0.92608 1.06083 1.22079 0.96628 0.96363 1.05860 1.19611 0.92282 0.95341 1.10009 1.82924 1.03184 1.06913 1.83990 1.21597 0.89587 0.87153 1.34593 1.84927 1.52462 1.55262 1.30135 1.18170 0.90016 0.92757 0.93639 1.19001 1.09149 0.92469 1.30066 0.90003 1.26546 0.93343 1.05036 0.92611 1.70062 1.19741 1.36597 1.15085 0.85285 0.79849 0.76511 0.78477 1.19241 1.20071 1.17841 0.91765 0.85842 0.91527 0.81766 0.84845 0.84727 0.80779 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.40 15 2 O -0.33 -9.19 10.49 -92.51 -0.97 -10.16 15 3 C 0.13 4.51 6.68 22.46 0.15 4.66 15 4 C -0.20 -6.46 9.01 22.25 0.20 -6.26 15 5 C -0.04 -1.73 9.81 22.69 0.22 -1.51 15 6 C -0.12 -5.97 6.00 -20.20 -0.12 -6.09 15 7 C -0.09 -4.28 6.41 22.89 0.15 -4.13 15 8 C -0.15 -5.72 10.00 22.61 0.23 -5.49 15 9 S -0.03 -1.32 23.19 -56.49 -1.31 -2.63 15 10 C -0.17 -9.16 7.00 67.63 0.47 -8.69 15 11 O -0.42 -22.45 10.83 -85.39 -0.92 -23.38 15 12 C 0.06 3.53 5.51 -20.69 -0.11 3.41 15 13 C -0.48 -25.35 8.88 23.17 0.21 -25.14 15 14 H 0.08 4.11 7.92 -2.91 -0.02 4.09 15 15 C 0.04 2.21 4.72 85.09 0.40 2.61 15 16 N -0.79 -43.72 11.05 21.77 0.24 -43.48 15 17 Si 0.98 38.95 29.61 68.60 2.03 40.98 15 18 H -0.27 -10.47 7.11 99.48 0.71 -9.76 15 19 H -0.28 -10.67 7.11 99.48 0.71 -9.96 15 20 H -0.25 -9.61 7.11 99.48 0.71 -8.91 15 21 H 0.06 0.99 7.66 -2.39 -0.02 0.97 15 22 H 0.12 1.40 8.14 -2.38 -0.02 1.38 15 23 H 0.07 0.99 7.66 -2.39 -0.02 0.97 15 24 H 0.16 3.79 6.29 -2.91 -0.02 3.77 15 25 H 0.13 4.93 8.03 -2.91 -0.02 4.90 15 26 H 0.13 4.73 8.06 -2.91 -0.02 4.71 15 27 H 0.34 15.24 9.06 -74.06 -0.67 14.56 15 28 H 0.28 14.36 8.31 -92.71 -0.77 13.59 15 Total: -1.00 -66.10 261.42 2.51 -63.60 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.54 Total: 20.32 kcal Atomic # 6 Polarization: -48.14 SS G_CDS: 2.90 Total: -45.24 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.24 Total: -43.48 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -1.90 Total: -33.54 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Atomic # 16 Polarization: -1.32 SS G_CDS: -1.31 Total: -2.63 kcal Total: -66.10 2.51 -63.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396388908.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.029 kcal (2) G-P(sol) polarization free energy of solvation -66.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds