Wall clock time and date at job start Mon Mar 30 2020 05:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36004 * 116.99767 * 2 1 4 4 C 1.42156 * 119.62745 * 269.95574 * 3 2 1 5 5 C 1.40512 * 128.59571 * 359.97438 * 4 3 2 6 6 C 1.32428 * 115.89146 * 180.02562 * 5 4 3 7 7 S 1.75472 * 110.85676 * 359.97438 * 6 5 4 8 8 C 1.40357 * 119.05546 * 180.02562 * 4 3 2 9 9 C 1.38831 * 120.27790 * 359.97438 * 8 4 3 10 10 C 1.40433 * 120.11963 * 0.02562 * 9 8 4 11 11 C 1.40906 * 120.20795 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99644 * 204.96866 * 11 10 9 13 13 C 1.39857 * 120.00080 * 24.96983 * 11 10 9 14 14 N 1.30925 * 120.00347 * 17.83732 * 13 11 10 15 15 Si 1.86802 * 119.99931 * 197.84111 * 13 11 10 16 16 H 1.48496 * 109.47063 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.46914 * 119.99626 * 15 13 11 18 18 H 1.48494 * 109.46988 * 239.99744 * 15 13 11 19 19 C 1.36144 * 119.62582 * 89.99998 * 3 2 1 20 20 O 1.35987 * 119.89338 * 0.25006 * 19 3 2 21 21 H 1.09002 * 109.47570 * 59.99991 * 1 2 3 22 22 H 1.09006 * 109.47515 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47763 * 300.00086 * 1 2 3 24 24 H 1.08010 * 122.05592 * 0.02562 * 5 4 3 25 25 H 1.07996 * 124.57141 * 179.97438 * 6 5 4 26 26 H 1.08001 * 119.93658 * 179.97438 * 9 8 4 27 27 H 0.96990 * 120.00402 * 180.02562 * 14 13 11 28 28 H 0.96696 * 114.00386 * 269.73324 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 2.3662 1.8376 -1.2357 5 6 2.1309 1.3724 -2.5405 6 6 2.5368 2.1665 -3.5195 7 16 3.2768 3.6221 -2.8771 8 6 3.0038 3.0879 -1.2217 9 6 3.3153 3.7013 -0.0158 10 6 2.9940 3.0728 1.1982 11 6 3.3098 3.6935 2.4232 12 1 3.4474 3.0953 3.3119 13 6 3.4449 5.0840 2.4882 14 7 2.9507 5.8350 1.5364 15 14 4.3307 5.8697 3.9330 16 1 4.7919 4.8107 4.8661 17 1 5.5012 6.6378 3.4376 18 1 3.4027 6.7854 4.6439 19 6 2.3519 1.8115 1.1835 20 8 2.0433 1.1945 2.3554 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3635 0.5138 0.8900 24 1 1.6486 0.4254 -2.7333 25 1 2.4271 1.9477 -4.5714 26 1 3.8063 4.6632 -0.0115 27 1 3.0447 6.7993 1.5813 28 1 1.1671 1.4172 2.6984 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396388925.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:20 Heat of formation + Delta-G solvation = -47.104419 kcal Electronic energy + Delta-G solvation = -15901.657716 eV Core-core repulsion = 13202.273126 eV Total energy + Delta-G solvation = -2699.384590 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.33512 -36.70034 -36.31841 -34.57535 -32.50014 -29.00702 -28.49561 -26.11013 -25.29012 -22.33588 -21.38372 -19.69191 -18.17494 -16.82881 -16.64964 -15.85947 -15.25171 -15.11897 -14.76667 -13.97112 -13.64797 -13.42165 -12.97641 -12.35634 -12.16583 -11.96083 -11.71427 -11.48562 -11.27684 -10.89099 -10.74147 -10.29715 -10.10672 -9.90493 -9.65877 -9.20468 -8.94808 -8.38590 -7.45432 -7.10243 -6.67295 -4.59270 1.74493 2.39537 2.63723 2.82971 2.93893 3.00270 3.02573 3.39565 3.70942 4.18199 4.54645 5.09246 5.39703 5.67716 5.73730 5.81743 5.90650 6.08862 6.46455 6.65031 6.72667 6.80150 6.84417 7.09047 7.35873 7.38730 7.59847 7.73738 8.13129 8.15212 8.42198 8.48504 8.90259 9.80998 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021600 B = 0.009262 C = 0.006739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.980855 B = 3022.316864 C = 4153.820440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.336 6.336 3 C 0.129 3.871 4 C -0.218 4.218 5 C -0.065 4.065 6 C -0.265 4.265 7 S 0.006 5.994 8 C -0.065 4.065 9 C -0.156 4.156 10 C 0.111 3.889 11 C -0.419 4.419 12 H 0.095 0.905 13 C 0.069 3.931 14 N -0.768 5.768 15 Si 0.917 3.083 16 H -0.256 1.256 17 H -0.268 1.268 18 H -0.271 1.271 19 C 0.002 3.998 20 O -0.483 6.483 21 H 0.040 0.960 22 H 0.082 0.918 23 H 0.038 0.962 24 H 0.119 0.881 25 H 0.146 0.854 26 H 0.129 0.871 27 H 0.288 0.712 28 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.989 -2.024 -1.724 4.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.253 6.253 3 C 0.083 3.917 4 C -0.224 4.224 5 C -0.095 4.095 6 C -0.398 4.398 7 S 0.265 5.735 8 C -0.181 4.181 9 C -0.182 4.182 10 C 0.105 3.895 11 C -0.447 4.447 12 H 0.113 0.887 13 C -0.152 4.152 14 N -0.391 5.391 15 Si 0.740 3.260 16 H -0.179 1.179 17 H -0.193 1.193 18 H -0.196 1.196 19 C -0.044 4.044 20 O -0.290 6.290 21 H 0.058 0.942 22 H 0.101 0.899 23 H 0.057 0.943 24 H 0.137 0.863 25 H 0.163 0.837 26 H 0.146 0.854 27 H 0.099 0.901 28 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.770 -1.000 -2.618 3.315 hybrid contribution -1.039 -0.400 1.127 1.584 sum -2.810 -1.401 -1.491 3.476 Atomic orbital electron populations 1.22790 0.80846 1.01787 1.00052 1.86010 1.18560 1.26199 1.94499 1.18292 0.97138 0.85432 0.90808 1.17743 1.15305 0.97046 0.92307 1.19612 0.99572 0.99045 0.91269 1.24468 1.13658 1.00134 1.01535 1.83645 1.67459 1.23488 0.98912 1.22209 1.02990 0.96780 0.96072 1.20488 1.07335 1.02362 0.88059 1.17614 0.89157 0.89198 0.93581 1.19682 1.37349 0.91572 0.96121 0.88737 1.26123 0.93386 0.97708 0.98006 1.69864 1.30513 1.07310 1.31452 0.86090 0.79708 0.79517 0.80645 1.17887 1.19268 1.19618 1.18265 1.07235 0.95190 0.83724 1.84883 1.37665 1.69302 1.37155 0.94174 0.89906 0.94348 0.86272 0.83675 0.85359 0.90069 0.78770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 11.13 101.05 1.12 1.77 15 2 O -0.34 -7.09 9.97 -36.32 -0.36 -7.45 15 3 C 0.13 3.03 5.74 -38.83 -0.22 2.81 15 4 C -0.22 -5.13 5.89 -106.74 -0.63 -5.76 15 5 C -0.07 -1.34 9.96 -40.65 -0.40 -1.75 15 6 C -0.27 -5.08 11.09 28.81 0.32 -4.76 15 7 S 0.01 0.11 23.29 -107.50 -2.50 -2.39 15 8 C -0.07 -1.59 6.46 -38.57 -0.25 -1.84 15 9 C -0.16 -3.98 8.71 -38.54 -0.34 -4.32 15 10 C 0.11 2.86 5.57 -106.80 -0.59 2.26 15 11 C -0.42 -10.35 8.69 -37.97 -0.33 -10.68 15 12 H 0.09 2.29 7.63 -52.48 -0.40 1.89 15 13 C 0.07 1.60 5.13 -17.33 -0.09 1.51 15 14 N -0.77 -18.33 10.98 55.54 0.61 -17.72 15 15 Si 0.92 17.23 29.60 -169.99 -5.03 12.20 15 16 H -0.26 -4.80 7.11 56.52 0.40 -4.40 15 17 H -0.27 -4.99 7.11 56.52 0.40 -4.58 15 18 H -0.27 -4.97 7.11 56.52 0.40 -4.57 15 19 C 0.00 0.04 6.67 -39.08 -0.26 -0.22 15 20 O -0.48 -10.65 12.47 -36.27 -0.45 -11.10 15 21 H 0.04 0.63 8.14 -51.93 -0.42 0.20 15 22 H 0.08 1.07 8.14 -51.93 -0.42 0.64 15 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 15 24 H 0.12 2.20 8.06 -52.48 -0.42 1.78 15 25 H 0.15 2.30 8.06 -52.49 -0.42 1.88 15 26 H 0.13 3.35 6.16 -52.49 -0.32 3.02 15 27 H 0.29 6.17 8.30 -40.82 -0.34 5.83 15 28 H 0.36 6.37 9.06 45.56 0.41 6.78 15 LS Contribution 264.35 15.07 3.98 3.98 Total: -1.00 -27.84 264.35 -6.99 -34.83 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -1.56 Total: 8.63 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -1.67 Total: -20.98 kcal Atomic # 7 Polarization: -18.33 SS G_CDS: 0.61 Total: -17.72 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.81 Total: -18.55 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.20 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -2.50 Total: -2.39 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.84 -6.99 -34.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396388925.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.278 kcal (2) G-P(sol) polarization free energy of solvation -27.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds