Wall clock time and date at job start Mon Mar 30 2020 05:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36004 * 116.99767 * 2 1 4 4 C 1.42156 * 119.62745 * 269.95574 * 3 2 1 5 5 C 1.40512 * 128.59571 * 359.97438 * 4 3 2 6 6 C 1.32428 * 115.89146 * 180.02562 * 5 4 3 7 7 S 1.75472 * 110.85676 * 359.97438 * 6 5 4 8 8 C 1.40357 * 119.05546 * 180.02562 * 4 3 2 9 9 C 1.38831 * 120.27790 * 359.97438 * 8 4 3 10 10 C 1.40433 * 120.11963 * 0.02562 * 9 8 4 11 11 C 1.40906 * 120.20795 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99644 * 204.96866 * 11 10 9 13 13 C 1.39857 * 120.00080 * 24.96983 * 11 10 9 14 14 N 1.30925 * 120.00347 * 17.83732 * 13 11 10 15 15 Si 1.86802 * 119.99931 * 197.84111 * 13 11 10 16 16 H 1.48496 * 109.47063 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.46914 * 119.99626 * 15 13 11 18 18 H 1.48494 * 109.46988 * 239.99744 * 15 13 11 19 19 C 1.36144 * 119.62582 * 89.99998 * 3 2 1 20 20 O 1.35987 * 119.89338 * 0.25006 * 19 3 2 21 21 H 1.09002 * 109.47570 * 59.99991 * 1 2 3 22 22 H 1.09006 * 109.47515 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47763 * 300.00086 * 1 2 3 24 24 H 1.08010 * 122.05592 * 0.02562 * 5 4 3 25 25 H 1.07996 * 124.57141 * 179.97438 * 6 5 4 26 26 H 1.08001 * 119.93658 * 179.97438 * 9 8 4 27 27 H 0.96990 * 120.00402 * 180.02562 * 14 13 11 28 28 H 0.96696 * 114.00386 * 269.73324 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 2.3662 1.8376 -1.2357 5 6 2.1309 1.3724 -2.5405 6 6 2.5368 2.1665 -3.5195 7 16 3.2768 3.6221 -2.8771 8 6 3.0038 3.0879 -1.2217 9 6 3.3153 3.7013 -0.0158 10 6 2.9940 3.0728 1.1982 11 6 3.3098 3.6935 2.4232 12 1 3.4474 3.0953 3.3119 13 6 3.4449 5.0840 2.4882 14 7 2.9507 5.8350 1.5364 15 14 4.3307 5.8697 3.9330 16 1 4.7919 4.8107 4.8661 17 1 5.5012 6.6378 3.4376 18 1 3.4027 6.7854 4.6439 19 6 2.3519 1.8115 1.1835 20 8 2.0433 1.1945 2.3554 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3635 0.5138 0.8900 24 1 1.6486 0.4254 -2.7333 25 1 2.4271 1.9477 -4.5714 26 1 3.8063 4.6632 -0.0115 27 1 3.0447 6.7993 1.5813 28 1 1.1671 1.4172 2.6984 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396388925.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:20 Heat of formation + Delta-G solvation = -64.265638 kcal Electronic energy + Delta-G solvation = -15902.401882 eV Core-core repulsion = 13202.273126 eV Total energy + Delta-G solvation = -2700.128756 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.04537 -38.34446 -38.03511 -36.30726 -34.22535 -30.72368 -30.22912 -27.55335 -27.03599 -24.06429 -23.14348 -21.38586 -19.88324 -18.56812 -18.37217 -17.53861 -16.88263 -16.78791 -16.33193 -15.66804 -15.12126 -15.02378 -14.65890 -14.04664 -13.82478 -13.61572 -13.38395 -13.02457 -12.73725 -12.55931 -12.32724 -11.93224 -11.70771 -11.61803 -11.36678 -10.92765 -10.59658 -10.11970 -9.23586 -8.82368 -8.38678 -6.43258 0.06309 0.58411 0.93314 1.30189 1.36509 1.39015 1.54510 1.74299 2.14604 2.48360 2.92009 3.34403 3.64333 4.30009 4.41228 4.45397 4.52780 4.69201 4.78210 4.90131 5.03742 5.05668 5.16786 5.32389 5.64280 5.65803 5.81524 5.89642 6.30889 6.50813 6.62629 6.69841 7.21097 8.12300 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021600 B = 0.009262 C = 0.006739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.980855 B = 3022.316864 C = 4153.820440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.348 6.348 3 C 0.126 3.874 4 C -0.228 4.228 5 C -0.084 4.084 6 C -0.239 4.239 7 S 0.024 5.976 8 C -0.094 4.094 9 C -0.180 4.180 10 C 0.085 3.915 11 C -0.450 4.450 12 H 0.089 0.911 13 C 0.035 3.965 14 N -0.800 5.800 15 Si 0.989 3.011 16 H -0.257 1.257 17 H -0.263 1.263 18 H -0.260 1.260 19 C -0.015 4.015 20 O -0.489 6.489 21 H 0.044 0.956 22 H 0.119 0.881 23 H 0.043 0.957 24 H 0.144 0.856 25 H 0.189 0.811 26 H 0.112 0.888 27 H 0.297 0.703 28 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.492 -2.572 -2.662 5.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.266 6.266 3 C 0.080 3.920 4 C -0.234 4.234 5 C -0.114 4.114 6 C -0.371 4.371 7 S 0.284 5.716 8 C -0.209 4.209 9 C -0.206 4.206 10 C 0.078 3.922 11 C -0.478 4.478 12 H 0.107 0.893 13 C -0.183 4.183 14 N -0.423 5.423 15 Si 0.809 3.191 16 H -0.180 1.180 17 H -0.188 1.188 18 H -0.184 1.184 19 C -0.061 4.061 20 O -0.297 6.297 21 H 0.062 0.938 22 H 0.137 0.863 23 H 0.061 0.939 24 H 0.162 0.838 25 H 0.206 0.794 26 H 0.130 0.870 27 H 0.108 0.892 28 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -2.298 -1.555 -3.562 4.515 hybrid contribution -0.979 -0.336 1.243 1.617 sum -3.277 -1.891 -2.319 4.437 Atomic orbital electron populations 1.23099 0.78030 1.04370 1.00522 1.85951 1.21183 1.24902 1.94557 1.18373 0.97113 0.85869 0.90629 1.18171 1.14689 0.96835 0.93755 1.19790 1.00929 1.00574 0.90077 1.25010 1.10586 0.98195 1.03348 1.83562 1.67200 1.24320 0.96552 1.22548 1.03319 0.97568 0.97510 1.20379 1.08941 1.02263 0.89052 1.17941 0.89867 0.90221 0.94132 1.19807 1.39458 0.92681 0.95816 0.89279 1.26921 0.93336 0.97485 1.00595 1.69897 1.31280 1.07983 1.33180 0.85038 0.78532 0.78423 0.77138 1.18014 1.18755 1.18403 1.18377 1.07856 0.95270 0.84646 1.84805 1.39124 1.69065 1.36736 0.93750 0.86261 0.93876 0.83818 0.79430 0.86988 0.89229 0.76820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 11.13 113.37 1.26 2.27 15 2 O -0.35 -14.29 9.97 -77.74 -0.78 -15.06 15 3 C 0.13 5.93 5.74 22.76 0.13 6.06 15 4 C -0.23 -10.61 5.89 -21.24 -0.13 -10.73 15 5 C -0.08 -3.26 9.96 21.71 0.22 -3.04 15 6 C -0.24 -8.32 11.09 66.70 0.74 -7.58 15 7 S 0.02 0.96 23.29 -56.49 -1.32 -0.35 15 8 C -0.09 -4.62 6.46 22.93 0.15 -4.47 15 9 C -0.18 -9.56 8.71 22.95 0.20 -9.36 15 10 C 0.08 4.53 5.57 -21.28 -0.12 4.41 15 11 C -0.45 -23.09 8.69 23.32 0.20 -22.88 15 12 H 0.09 4.49 7.63 -2.91 -0.02 4.47 15 13 C 0.04 1.66 5.13 85.22 0.44 2.10 15 14 N -0.80 -39.27 10.98 21.82 0.24 -39.03 15 15 Si 0.99 35.68 29.60 68.60 2.03 37.71 15 16 H -0.26 -9.20 7.11 99.48 0.71 -8.49 15 17 H -0.26 -9.20 7.11 99.48 0.71 -8.50 15 18 H -0.26 -8.82 7.11 99.48 0.71 -8.11 15 19 C -0.02 -0.76 6.67 22.60 0.15 -0.61 15 20 O -0.49 -21.87 12.47 -77.56 -0.97 -22.84 15 21 H 0.04 1.29 8.14 -2.39 -0.02 1.27 15 22 H 0.12 2.68 8.14 -2.38 -0.02 2.66 15 23 H 0.04 1.24 8.14 -2.39 -0.02 1.22 15 24 H 0.14 4.80 8.06 -2.91 -0.02 4.78 15 25 H 0.19 4.92 8.06 -2.91 -0.02 4.90 15 26 H 0.11 6.16 6.16 -2.91 -0.02 6.14 15 27 H 0.30 12.97 8.30 -92.72 -0.77 12.20 15 28 H 0.38 13.52 9.06 -74.06 -0.67 12.85 15 Total: -1.00 -61.02 264.35 2.99 -58.03 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.53 Total: 25.38 kcal Atomic # 6 Polarization: -47.08 SS G_CDS: 3.24 Total: -43.84 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.24 Total: -39.03 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -1.74 Total: -37.90 kcal Atomic # 14 Polarization: 35.68 SS G_CDS: 2.03 Total: 37.71 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -1.32 Total: -0.35 kcal Total: -61.02 2.99 -58.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396388925.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.239 kcal (2) G-P(sol) polarization free energy of solvation -61.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds