Wall clock time and date at job start Mon Mar 30 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35726 * 116.99894 * 2 1 4 4 C 1.37425 * 119.85009 * 359.97438 * 3 2 1 5 5 C 1.39256 * 120.37286 * 179.97438 * 4 3 2 6 6 O 1.35787 * 119.90929 * 180.02562 * 5 4 3 7 7 C 1.38446 * 120.18529 * 0.02562 * 5 4 3 8 8 C 1.39353 * 120.52922 * 0.02562 * 7 5 4 9 9 S 1.76021 * 130.12392 * 180.32799 * 8 7 5 10 10 C 1.75455 * 91.77043 * 180.02562 * 9 8 7 11 11 C 1.39856 * 124.83954 * 179.91720 * 10 9 8 12 12 H 1.07999 * 120.00361 * 171.37869 * 11 10 9 13 13 C 1.40047 * 120.00115 * 351.37948 * 11 10 9 14 14 N 1.30860 * 119.99701 * 351.80959 * 13 11 10 15 15 Si 1.86798 * 119.99870 * 171.80762 * 13 11 10 16 16 H 1.48497 * 109.46963 * 265.02508 * 15 13 11 17 17 H 1.48491 * 109.47262 * 25.02990 * 15 13 11 18 18 H 1.48501 * 109.46605 * 145.02924 * 15 13 11 19 19 C 1.37040 * 110.31698 * 359.64693 * 10 9 8 20 20 C 1.39563 * 115.06104 * 0.27251 * 19 10 9 21 21 H 1.08991 * 109.47284 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46727 * 299.99894 * 1 2 3 23 23 H 1.08997 * 109.46693 * 59.99821 * 1 2 3 24 24 H 1.07999 * 119.80911 * 359.97438 * 4 3 2 25 25 H 0.96705 * 113.99844 * 270.02288 * 6 5 4 26 26 H 1.08001 * 119.73715 * 179.97438 * 7 5 4 27 27 H 0.96997 * 119.99740 * 179.97438 * 14 13 11 28 28 H 1.08000 * 122.46696 * 180.28848 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2937 2.3599 -0.0005 5 6 1.9145 3.6064 0.0000 6 8 1.1628 4.7372 0.0000 7 6 3.2961 3.6960 0.0005 8 6 4.0802 2.5439 0.0000 9 16 5.8311 2.3634 0.0082 10 6 5.7052 0.6134 -0.0001 11 6 6.7928 -0.2659 0.0000 12 1 6.6309 -1.3251 0.1349 13 6 8.0919 0.2272 -0.1748 14 7 8.2776 1.4818 -0.4972 15 14 9.5593 -0.9061 0.0523 16 1 10.0762 -0.7750 1.4382 17 1 9.1423 -2.3105 -0.1898 18 1 10.6262 -0.5334 -0.9112 19 6 4.3892 0.2310 -0.0006 20 6 3.4688 1.2801 -0.0006 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 0.2156 2.2970 -0.0014 25 1 0.9451 5.0648 -0.8835 26 1 3.7700 4.6665 0.0005 27 1 9.1774 1.8233 -0.6179 28 1 4.0867 -0.8058 -0.0006 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396389005.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:14 Heat of formation + Delta-G solvation = -81.300131 kcal Electronic energy + Delta-G solvation = -15389.922059 eV Core-core repulsion = 12689.054631 eV Total energy + Delta-G solvation = -2700.867427 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.01013 -39.03285 -37.84906 -36.31416 -34.12300 -30.87058 -30.48924 -28.33468 -26.60348 -24.04923 -23.02052 -21.19833 -20.15256 -19.33572 -17.72518 -17.36907 -16.96839 -16.56100 -16.50519 -15.99497 -15.51966 -14.95690 -14.55083 -14.15032 -13.95475 -13.71148 -13.18068 -13.03568 -12.69891 -12.39715 -12.28748 -12.11017 -11.91853 -11.61534 -11.42835 -11.08508 -10.92631 -9.85215 -9.13810 -8.97413 -8.15559 -6.48844 0.18491 0.52644 1.21632 1.35148 1.36913 1.54596 1.77457 1.80395 2.13234 2.59174 2.74101 3.12135 3.51711 4.07357 4.24123 4.33983 4.40945 4.59462 4.69716 4.79612 4.92346 5.08088 5.17172 5.42133 5.56312 5.64643 5.80459 5.83469 6.06108 6.36283 6.52994 6.66799 7.03944 7.96913 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.032998 B = 0.006706 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.328294 B = 4174.312978 C = 4993.182166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.100 3.900 4 C -0.220 4.220 5 C 0.072 3.928 6 O -0.498 6.498 7 C -0.121 4.121 8 C -0.241 4.241 9 S 0.131 5.869 10 C 0.025 3.975 11 C -0.417 4.417 12 H 0.101 0.899 13 C 0.021 3.979 14 N -0.799 5.799 15 Si 1.011 2.989 16 H -0.257 1.257 17 H -0.255 1.255 18 H -0.258 1.258 19 C -0.373 4.373 20 C -0.033 4.033 21 H 0.119 0.881 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.151 0.849 25 H 0.399 0.601 26 H 0.125 0.875 27 H 0.312 0.688 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.465 0.923 -0.991 5.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.252 6.252 3 C 0.054 3.946 4 C -0.242 4.242 5 C 0.026 3.974 6 O -0.310 6.310 7 C -0.144 4.144 8 C -0.356 4.356 9 S 0.392 5.608 10 C -0.094 4.094 11 C -0.451 4.451 12 H 0.118 0.882 13 C -0.198 4.198 14 N -0.425 5.425 15 Si 0.829 3.171 16 H -0.181 1.181 17 H -0.178 1.178 18 H -0.182 1.182 19 C -0.398 4.398 20 C -0.041 4.041 21 H 0.137 0.863 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.168 0.832 25 H 0.256 0.744 26 H 0.143 0.857 27 H 0.125 0.875 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.987 1.827 -0.444 4.408 hybrid contribution -0.960 -1.205 -0.486 1.616 sum -4.947 0.621 -0.930 5.072 Atomic orbital electron populations 1.23294 0.76977 1.05213 1.01946 1.85990 1.23032 1.27106 1.89038 1.18848 0.89952 0.84636 1.01177 1.21022 1.00356 0.90977 1.11819 1.17580 0.88154 0.85456 1.06251 1.84732 1.71395 1.40101 1.34764 1.20512 0.92799 0.96280 1.04794 1.23328 1.01889 0.95518 1.14888 1.84349 0.94489 1.03096 1.78887 1.21707 0.96002 0.95956 0.95693 1.19576 0.90386 0.96098 1.39026 0.88154 1.27250 1.03920 0.97789 0.90856 1.68900 1.27434 1.16160 1.30040 0.84709 0.74555 0.78092 0.79709 1.18096 1.17802 1.18187 1.19566 0.91043 0.97201 1.31945 1.17673 0.90931 0.93183 1.02338 0.86328 0.92156 0.91824 0.83179 0.74357 0.85713 0.87507 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.80 113.37 1.11 1.64 15 2 O -0.34 -13.67 10.35 -90.49 -0.94 -14.61 15 3 C 0.10 4.49 6.77 23.15 0.16 4.65 15 4 C -0.22 -8.42 8.93 22.32 0.20 -8.22 15 5 C 0.07 2.79 6.70 22.56 0.15 2.94 15 6 O -0.50 -15.46 13.49 -91.17 -1.23 -16.69 15 7 C -0.12 -5.20 9.99 22.59 0.23 -4.97 15 8 C -0.24 -12.00 6.46 23.06 0.15 -11.85 15 9 S 0.13 6.70 20.30 -56.49 -1.15 5.55 15 10 C 0.03 1.39 6.07 22.38 0.14 1.53 15 11 C -0.42 -21.51 9.25 23.10 0.21 -21.30 15 12 H 0.10 4.95 7.86 -2.91 -0.02 4.92 15 13 C 0.02 0.95 5.46 85.28 0.47 1.42 15 14 N -0.80 -37.66 10.77 21.85 0.24 -37.42 15 15 Si 1.01 34.17 29.57 68.60 2.03 36.20 15 16 H -0.26 -8.37 7.11 99.48 0.71 -7.66 15 17 H -0.25 -8.45 7.11 99.48 0.71 -7.75 15 18 H -0.26 -8.11 7.11 99.48 0.71 -7.40 15 19 C -0.37 -20.56 9.97 22.31 0.22 -20.34 15 20 C -0.03 -1.70 5.87 -21.36 -0.13 -1.83 15 21 H 0.12 2.41 8.14 -2.39 -0.02 2.39 15 22 H 0.06 1.44 7.64 -2.39 -0.02 1.42 15 23 H 0.06 1.47 7.64 -2.39 -0.02 1.45 15 24 H 0.15 4.61 6.21 -2.91 -0.02 4.59 15 25 H 0.40 8.03 9.06 -74.05 -0.67 7.36 15 26 H 0.12 4.87 8.06 -2.91 -0.02 4.85 15 27 H 0.31 12.87 8.30 -92.71 -0.77 12.10 15 28 H 0.10 5.44 8.06 -2.91 -0.02 5.42 15 Total: -1.00 -64.01 262.03 2.39 -61.62 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.54 Total: 21.68 kcal Atomic # 6 Polarization: -59.24 SS G_CDS: 2.91 Total: -56.34 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.24 Total: -37.42 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -2.17 Total: -31.29 kcal Atomic # 14 Polarization: 34.17 SS G_CDS: 2.03 Total: 36.20 kcal Atomic # 16 Polarization: 6.70 SS G_CDS: -1.15 Total: 5.55 kcal Total: -64.01 2.39 -61.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396389005.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.682 kcal (2) G-P(sol) polarization free energy of solvation -64.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds