Wall clock time and date at job start Mon Mar 30 2020 05:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36193 * 117.00296 * 2 1 4 4 C 1.34081 * 122.19330 * 90.02651 * 3 2 1 5 5 O 1.35576 * 124.65054 * 359.75018 * 4 3 2 6 6 S 1.75465 * 110.69666 * 179.72974 * 4 3 2 7 7 C 1.76046 * 91.64089 * 0.02562 * 6 4 3 8 8 C 1.38583 * 130.30683 * 180.02562 * 7 6 4 9 9 C 1.40509 * 120.02519 * 180.02562 * 8 7 6 10 10 C 1.40878 * 120.18832 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00130 * 150.03836 * 10 9 8 12 12 C 1.39643 * 120.00319 * 330.04119 * 10 9 8 13 13 N 1.31044 * 119.99882 * 161.68537 * 12 10 9 14 14 Si 1.86801 * 119.99866 * 341.68581 * 12 10 9 15 15 H 1.48503 * 109.47088 * 95.41416 * 14 12 10 16 16 H 1.48500 * 109.46957 * 215.41209 * 14 12 10 17 17 H 1.48498 * 109.47065 * 335.41398 * 14 12 10 18 18 C 1.41275 * 119.61762 * 359.92245 * 9 8 7 19 19 C 1.35140 * 120.36849 * 0.06115 * 18 9 8 20 20 C 1.40215 * 122.19675 * 269.73750 * 3 2 1 21 21 H 1.09003 * 109.46562 * 299.99996 * 1 2 3 22 22 H 1.08991 * 109.46990 * 59.99679 * 1 2 3 23 23 H 1.09002 * 109.46882 * 180.02562 * 1 2 3 24 24 H 0.96704 * 114.00049 * 90.00596 * 5 4 3 25 25 H 1.07995 * 119.99033 * 359.97343 * 8 7 6 26 26 H 0.96999 * 119.99299 * 180.02562 * 13 12 10 27 27 H 1.08000 * 119.81551 * 180.02562 * 18 9 8 28 28 H 1.07998 * 119.57165 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2135 0.0000 4 6 2.3722 1.8497 1.1347 5 8 2.1263 1.3766 2.3812 6 16 3.1597 3.3782 0.7850 7 6 3.0242 3.1090 -0.9495 8 6 3.4325 3.8974 -2.0137 9 6 3.2124 3.4666 -3.3329 10 6 3.6255 4.2655 -4.4172 11 1 3.9141 3.8031 -5.3496 12 6 3.6620 5.6553 -4.2865 13 7 4.3651 6.3742 -5.1269 14 14 2.7088 6.4897 -2.9137 15 1 3.6090 6.7208 -1.7554 16 1 2.1808 7.7906 -3.3975 17 1 1.5788 5.6211 -2.4968 18 6 2.5755 2.2273 -3.5655 19 6 2.1776 1.4582 -2.5280 20 6 2.3915 1.8766 -1.1865 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 2.8407 0.8355 2.7445 25 1 3.9192 4.8436 -1.8290 26 1 4.3907 7.3396 -5.0358 27 1 2.4051 1.8929 -4.5782 28 1 1.6915 0.5132 -2.7207 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396389388.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:07 Heat of formation + Delta-G solvation = -62.052781 kcal Electronic energy + Delta-G solvation = -15658.231754 eV Core-core repulsion = 12958.198954 eV Total energy + Delta-G solvation = -2700.032800 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.98336 -39.24806 -38.08711 -36.03614 -34.25667 -31.92222 -30.40889 -27.91338 -26.77036 -23.78035 -23.51002 -21.58376 -19.70065 -19.62404 -18.35648 -17.75538 -17.26600 -16.78363 -16.14586 -15.82299 -15.54225 -15.18062 -14.73431 -14.64903 -14.20157 -14.00766 -13.38717 -13.08717 -12.84515 -12.67884 -12.24242 -12.08247 -11.82409 -11.71990 -11.34121 -11.06856 -10.65877 -10.33341 -9.28704 -9.08827 -8.60834 -6.59448 -0.26269 0.47503 0.62465 0.95312 1.07417 1.25335 1.35347 1.44643 2.03834 2.40142 2.96235 3.30926 3.34603 4.04520 4.39166 4.39471 4.51012 4.58892 4.62626 4.69727 4.77653 4.92309 5.06692 5.22065 5.40561 5.63598 5.70995 5.98902 6.14613 6.33394 6.49117 6.62773 6.66087 7.96518 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.031252 B = 0.007940 C = 0.006831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.741617 B = 3525.696428 C = 4098.232030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.333 6.333 3 C 0.109 3.891 4 C -0.059 4.059 5 O -0.447 6.447 6 S 0.039 5.961 7 C -0.068 4.068 8 C -0.248 4.248 9 C 0.097 3.903 10 C -0.445 4.445 11 H 0.081 0.919 12 C 0.058 3.942 13 N -0.818 5.818 14 Si 0.951 3.049 15 H -0.263 1.263 16 H -0.268 1.268 17 H -0.255 1.255 18 C -0.185 4.185 19 C -0.035 4.035 20 C -0.222 4.222 21 H 0.044 0.956 22 H 0.044 0.956 23 H 0.123 0.877 24 H 0.401 0.599 25 H 0.101 0.899 26 H 0.301 0.699 27 H 0.129 0.871 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.280 -6.528 8.813 12.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.250 6.250 3 C 0.052 3.948 4 C -0.219 4.219 5 O -0.257 6.257 6 S 0.298 5.702 7 C -0.183 4.183 8 C -0.274 4.274 9 C 0.091 3.909 10 C -0.473 4.473 11 H 0.099 0.901 12 C -0.161 4.161 13 N -0.442 5.442 14 Si 0.775 3.225 15 H -0.189 1.189 16 H -0.194 1.194 17 H -0.179 1.179 18 C -0.204 4.204 19 C -0.055 4.055 20 C -0.228 4.228 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.141 0.859 24 H 0.258 0.742 25 H 0.119 0.881 26 H 0.112 0.888 27 H 0.147 0.853 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.059 -5.105 9.587 11.982 hybrid contribution -0.197 -0.488 -0.545 0.757 sum -5.256 -5.592 9.043 11.860 Atomic orbital electron populations 1.23180 0.77402 1.04693 1.00693 1.85947 1.21450 1.23282 1.94339 1.17896 0.99465 0.87009 0.90476 1.22112 1.14019 0.98343 0.87446 1.84693 1.46163 1.69588 1.25303 1.83845 1.65545 1.21726 0.99073 1.22030 1.02366 0.98033 0.95864 1.20204 1.13862 1.02057 0.91325 1.17771 0.88558 0.93196 0.91372 1.19537 1.36392 0.91740 0.99600 0.90105 1.26728 0.93409 0.98091 0.97896 1.69772 1.29557 1.09736 1.35140 0.85648 0.80606 0.77896 0.78335 1.18907 1.19413 1.17910 1.20952 1.03815 0.96621 0.99022 1.20558 0.96890 0.98338 0.89686 1.17831 1.13504 0.97033 0.94407 0.93700 0.93728 0.85862 0.74214 0.88135 0.88818 0.85268 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 11.14 113.37 1.26 2.15 15 2 O -0.33 -11.15 10.38 -87.65 -0.91 -12.06 15 3 C 0.11 4.12 5.76 21.80 0.13 4.25 15 4 C -0.06 -2.13 7.55 66.87 0.51 -1.63 15 5 O -0.45 -13.20 13.57 -80.74 -1.10 -14.30 15 6 S 0.04 1.49 23.28 -56.49 -1.32 0.18 15 7 C -0.07 -3.02 6.45 22.92 0.15 -2.87 15 8 C -0.25 -11.88 7.18 22.91 0.16 -11.72 15 9 C 0.10 4.70 5.09 -21.33 -0.11 4.59 15 10 C -0.44 -22.85 9.53 23.26 0.22 -22.63 15 11 H 0.08 4.32 8.06 -2.91 -0.02 4.30 15 12 C 0.06 2.89 5.39 85.15 0.46 3.35 15 13 N -0.82 -41.32 13.94 21.78 0.30 -41.02 15 14 Si 0.95 41.25 24.51 68.60 1.68 42.93 15 15 H -0.26 -11.21 6.71 99.48 0.67 -10.54 15 16 H -0.27 -10.71 7.11 99.48 0.71 -10.00 15 17 H -0.26 -11.58 6.87 99.48 0.68 -10.90 15 18 C -0.18 -7.91 9.68 22.30 0.22 -7.69 15 19 C -0.03 -1.39 9.91 22.53 0.22 -1.16 15 20 C -0.22 -9.36 5.89 -21.27 -0.13 -9.48 15 21 H 0.04 1.14 8.14 -2.39 -0.02 1.12 15 22 H 0.04 1.14 8.14 -2.39 -0.02 1.12 15 23 H 0.12 2.23 8.14 -2.39 -0.02 2.21 15 24 H 0.40 7.90 9.06 -74.05 -0.67 7.23 15 25 H 0.10 4.86 4.72 -2.91 -0.01 4.84 15 26 H 0.30 13.59 8.30 -92.71 -0.77 12.82 15 27 H 0.13 4.96 8.06 -2.91 -0.02 4.93 15 28 H 0.13 4.46 8.06 -2.91 -0.02 4.44 15 Total: -1.00 -57.75 260.62 2.23 -55.52 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.47 Total: 11.58 kcal Atomic # 6 Polarization: -45.93 SS G_CDS: 3.09 Total: -42.84 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.30 Total: -41.02 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -2.01 Total: -26.35 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.68 Total: 42.93 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -1.32 Total: 0.18 kcal Total: -57.75 2.23 -55.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396389388.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.534 kcal (2) G-P(sol) polarization free energy of solvation -57.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds