Wall clock time and date at job start Mon Mar 30 2020 05:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36136 * 117.00390 * 2 1 4 4 C 1.32282 * 122.61432 * 0.03486 * 3 2 1 5 5 S 1.75294 * 111.27523 * 179.72814 * 4 3 2 6 6 C 1.75900 * 92.21837 * 0.24160 * 5 4 3 7 7 C 1.39242 * 109.84195 * 359.97438 * 6 5 4 8 8 C 1.41882 * 118.97475 * 180.02562 * 7 6 5 9 9 O 1.35557 * 119.61524 * 180.02562 * 8 7 6 10 10 C 1.38624 * 120.75939 * 0.02562 * 8 7 6 11 11 C 1.37591 * 120.67117 * 359.97438 * 10 8 7 12 12 C 1.40539 * 119.95252 * 0.02562 * 11 10 8 13 13 C 1.40810 * 120.03532 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99796 * 205.10289 * 13 12 11 15 15 C 1.39735 * 119.99729 * 25.10657 * 13 12 11 16 16 N 1.31002 * 120.00549 * 18.00949 * 15 13 12 17 17 Si 1.86801 * 119.99918 * 198.00859 * 15 13 12 18 18 H 1.48503 * 109.46976 * 59.99982 * 17 15 13 19 19 H 1.48501 * 109.47578 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47234 * 300.00135 * 17 15 13 21 21 H 1.08996 * 109.47267 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46753 * 299.99570 * 1 2 3 23 23 H 1.08997 * 109.47293 * 59.99237 * 1 2 3 24 24 H 1.07998 * 124.36008 * 359.97438 * 4 3 2 25 25 H 0.96700 * 114.00381 * 270.00020 * 9 8 7 26 26 H 1.08004 * 119.66129 * 180.02562 * 10 8 7 27 27 H 1.07998 * 120.02203 * 179.97438 * 11 10 8 28 28 H 0.96999 * 120.00649 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0471 1.2129 0.0000 4 6 1.3781 2.3541 0.0007 5 16 2.4655 3.7289 0.0082 6 6 3.8864 2.6920 0.0031 7 6 3.4960 1.3554 -0.0035 8 6 4.4947 0.3477 -0.0079 9 8 4.1292 -0.9577 -0.0149 10 6 5.8399 0.6826 -0.0052 11 6 6.2350 2.0006 0.0013 12 6 5.2701 3.0224 0.0058 13 6 5.6725 4.3717 0.0119 14 1 5.0151 5.1294 0.4121 15 6 6.9223 4.7304 -0.4999 16 7 7.5667 3.9086 -1.2907 17 14 7.6742 6.3818 -0.0563 18 1 7.8518 6.4655 1.4157 19 1 8.9944 6.5196 -0.7222 20 1 6.7746 7.4730 -0.5091 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 0.3007 2.4290 0.0009 25 1 4.0225 -1.3410 0.8665 26 1 6.5853 -0.0989 -0.0091 27 1 7.2858 2.2497 0.0037 28 1 8.4345 4.1573 -1.6457 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396389437.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:14 Heat of formation + Delta-G solvation = -45.868099 kcal Electronic energy + Delta-G solvation = -15689.197327 eV Core-core repulsion = 12989.866348 eV Total energy + Delta-G solvation = -2699.330979 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.22365 -37.73728 -35.80329 -34.05400 -32.39177 -29.42374 -27.91699 -27.22939 -24.98028 -22.12364 -21.20236 -19.81870 -18.02113 -17.37650 -16.27120 -15.76304 -15.30123 -15.14461 -14.81890 -14.18237 -13.80905 -13.54842 -12.88783 -12.29455 -11.98070 -11.92138 -11.47604 -11.42043 -11.23176 -11.02543 -10.87186 -10.42538 -10.31460 -9.83621 -9.64478 -9.34417 -9.11761 -7.95979 -7.47190 -6.99780 -6.54375 -4.46854 1.82863 2.50531 2.61873 2.97290 2.98785 3.02660 3.15177 3.37290 3.78289 3.86129 4.36976 5.23896 5.29772 5.37625 5.38700 5.56915 5.65608 6.04900 6.29895 6.44310 6.70413 6.77281 6.97016 7.14743 7.22347 7.55824 7.70607 7.90880 7.93349 8.28686 8.54212 8.58876 8.87400 9.96212 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.030883 B = 0.007763 C = 0.006328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.433764 B = 3605.849671 C = 4423.737176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.298 6.298 3 C 0.131 3.869 4 C -0.333 4.333 5 S 0.064 5.936 6 C -0.186 4.186 7 C -0.067 4.067 8 C 0.006 3.994 9 O -0.491 6.491 10 C -0.107 4.107 11 C -0.152 4.152 12 C 0.139 3.861 13 C -0.448 4.448 14 H 0.083 0.917 15 C 0.077 3.923 16 N -0.780 5.780 17 Si 0.913 3.087 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.262 1.262 21 H 0.093 0.907 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.151 0.849 25 H 0.356 0.644 26 H 0.104 0.896 27 H 0.130 0.870 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.937 -1.927 3.127 6.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.212 6.212 3 C 0.074 3.926 4 C -0.467 4.467 5 S 0.323 5.677 6 C -0.301 4.301 7 C -0.074 4.074 8 C -0.042 4.042 9 O -0.297 6.297 10 C -0.127 4.127 11 C -0.175 4.175 12 C 0.133 3.867 13 C -0.476 4.476 14 H 0.101 0.899 15 C -0.143 4.143 16 N -0.404 5.404 17 Si 0.737 3.263 18 H -0.185 1.185 19 H -0.201 1.201 20 H -0.187 1.187 21 H 0.111 0.889 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.169 0.831 25 H 0.208 0.792 26 H 0.122 0.878 27 H 0.148 0.852 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.932 -0.523 2.346 6.401 hybrid contribution 0.160 -0.747 0.529 0.930 sum -5.772 -1.270 2.876 6.573 Atomic orbital electron populations 1.22930 0.79913 1.02978 1.00756 1.86139 1.19688 1.26377 1.88978 1.18810 0.90995 0.83813 0.98990 1.24533 1.02901 0.96851 1.22401 1.83384 0.94719 1.07277 1.82327 1.22252 0.97221 0.93111 1.17533 1.18446 0.88342 0.93538 1.07098 1.17750 0.89980 0.81282 1.15202 1.84802 1.90922 1.22645 1.31350 1.20818 0.93527 0.96851 1.01473 1.21068 0.99699 0.90163 1.06567 1.16977 0.86792 0.94119 0.88767 1.19424 1.00674 0.93170 1.34329 0.89866 1.25929 0.96422 0.99590 0.92376 1.69876 1.13375 1.36735 1.20374 0.86266 0.78545 0.81343 0.80175 1.18498 1.20062 1.18681 0.88886 0.93387 0.93327 0.83134 0.79232 0.87796 0.85218 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.92 101.05 1.00 1.40 15 2 O -0.30 -5.73 9.89 -25.94 -0.26 -5.99 15 3 C 0.13 2.83 6.84 -38.58 -0.26 2.57 15 4 C -0.33 -6.56 9.94 28.81 0.29 -6.28 15 5 S 0.06 1.36 22.81 -107.50 -2.45 -1.09 15 6 C -0.19 -4.64 6.36 -37.66 -0.24 -4.88 15 7 C -0.07 -1.63 6.04 -105.20 -0.64 -2.26 15 8 C 0.01 0.14 6.78 -38.05 -0.26 -0.12 15 9 O -0.49 -10.46 12.77 -24.14 -0.31 -10.77 15 10 C -0.11 -2.51 9.90 -39.67 -0.39 -2.90 15 11 C -0.15 -3.81 8.65 -38.95 -0.34 -4.15 15 12 C 0.14 3.63 5.59 -106.51 -0.60 3.03 15 13 C -0.45 -11.36 8.80 -38.05 -0.33 -11.69 15 14 H 0.08 2.05 7.74 -52.49 -0.41 1.64 15 15 C 0.08 1.83 5.11 -17.35 -0.09 1.74 15 16 N -0.78 -19.10 10.98 55.54 0.61 -18.49 15 17 Si 0.91 17.75 29.60 -169.99 -5.03 12.72 15 18 H -0.26 -5.02 7.11 56.52 0.40 -4.61 15 19 H -0.28 -5.20 7.11 56.52 0.40 -4.80 15 20 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 21 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.05 0.58 7.84 -51.93 -0.41 0.17 15 23 H 0.05 0.61 7.84 -51.93 -0.41 0.21 15 24 H 0.15 2.45 6.91 -52.49 -0.36 2.09 15 25 H 0.36 5.98 9.06 45.56 0.41 6.39 15 26 H 0.10 2.17 8.06 -52.48 -0.42 1.75 15 27 H 0.13 3.26 6.17 -52.49 -0.32 2.94 15 28 H 0.29 6.34 8.30 -40.82 -0.34 6.01 15 LS Contribution 261.36 15.07 3.94 3.94 Total: -1.00 -28.72 261.36 -6.83 -35.55 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -1.47 Total: 7.66 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -1.86 Total: -23.52 kcal Atomic # 7 Polarization: -19.10 SS G_CDS: 0.61 Total: -18.49 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.56 Total: -16.76 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.45 Total: -1.09 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.72 -6.83 -35.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396389437.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.319 kcal (2) G-P(sol) polarization free energy of solvation -28.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds