Wall clock time and date at job start Mon Mar 30 2020 05:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36136 * 117.00390 * 2 1 4 4 C 1.32282 * 122.61432 * 0.03486 * 3 2 1 5 5 S 1.75294 * 111.27523 * 179.72814 * 4 3 2 6 6 C 1.75900 * 92.21837 * 0.24160 * 5 4 3 7 7 C 1.39242 * 109.84195 * 359.97438 * 6 5 4 8 8 C 1.41882 * 118.97475 * 180.02562 * 7 6 5 9 9 O 1.35557 * 119.61524 * 180.02562 * 8 7 6 10 10 C 1.38624 * 120.75939 * 0.02562 * 8 7 6 11 11 C 1.37591 * 120.67117 * 359.97438 * 10 8 7 12 12 C 1.40539 * 119.95252 * 0.02562 * 11 10 8 13 13 C 1.40810 * 120.03532 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99796 * 205.10289 * 13 12 11 15 15 C 1.39735 * 119.99729 * 25.10657 * 13 12 11 16 16 N 1.31002 * 120.00549 * 18.00949 * 15 13 12 17 17 Si 1.86801 * 119.99918 * 198.00859 * 15 13 12 18 18 H 1.48503 * 109.46976 * 59.99982 * 17 15 13 19 19 H 1.48501 * 109.47578 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47234 * 300.00135 * 17 15 13 21 21 H 1.08996 * 109.47267 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46753 * 299.99570 * 1 2 3 23 23 H 1.08997 * 109.47293 * 59.99237 * 1 2 3 24 24 H 1.07998 * 124.36008 * 359.97438 * 4 3 2 25 25 H 0.96700 * 114.00381 * 270.00020 * 9 8 7 26 26 H 1.08004 * 119.66129 * 180.02562 * 10 8 7 27 27 H 1.07998 * 120.02203 * 179.97438 * 11 10 8 28 28 H 0.96999 * 120.00649 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0471 1.2129 0.0000 4 6 1.3781 2.3541 0.0007 5 16 2.4655 3.7289 0.0082 6 6 3.8864 2.6920 0.0031 7 6 3.4960 1.3554 -0.0035 8 6 4.4947 0.3477 -0.0079 9 8 4.1292 -0.9577 -0.0149 10 6 5.8399 0.6826 -0.0052 11 6 6.2350 2.0006 0.0013 12 6 5.2701 3.0224 0.0058 13 6 5.6725 4.3717 0.0119 14 1 5.0151 5.1294 0.4121 15 6 6.9223 4.7304 -0.4999 16 7 7.5667 3.9086 -1.2907 17 14 7.6742 6.3818 -0.0563 18 1 7.8518 6.4655 1.4157 19 1 8.9944 6.5196 -0.7222 20 1 6.7746 7.4730 -0.5091 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 0.3007 2.4290 0.0009 25 1 4.0225 -1.3410 0.8665 26 1 6.5853 -0.0989 -0.0091 27 1 7.2858 2.2497 0.0037 28 1 8.4345 4.1573 -1.6457 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396389437.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:13 Heat of formation + Delta-G solvation = -64.328927 kcal Electronic energy + Delta-G solvation = -15689.997848 eV Core-core repulsion = 12989.866348 eV Total energy + Delta-G solvation = -2700.131501 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.81171 -39.35284 -37.55731 -35.76712 -34.11492 -31.25632 -29.59980 -28.42713 -26.79555 -23.83291 -22.99734 -21.43836 -19.73243 -19.14165 -17.80888 -17.49133 -16.76439 -16.66482 -16.41027 -15.95299 -15.51504 -15.10028 -14.45622 -13.93049 -13.66142 -13.53858 -13.15674 -12.87963 -12.80003 -12.56148 -12.38800 -12.07524 -11.94863 -11.55759 -11.27729 -11.08635 -10.89537 -9.71973 -9.27116 -8.77689 -8.26299 -6.34488 0.10162 0.68663 0.96631 1.37701 1.41554 1.43479 1.51677 1.68875 2.17740 2.48555 2.58305 3.41152 3.78714 3.84753 4.29545 4.41285 4.43842 4.63010 4.71105 4.76378 4.97472 4.98933 5.16764 5.35894 5.42675 5.77256 5.86586 6.05064 6.42037 6.46556 6.71718 6.73603 7.21627 8.21233 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.030883 B = 0.007763 C = 0.006328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.433764 B = 3605.849671 C = 4423.737176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.315 6.315 3 C 0.117 3.883 4 C -0.316 4.316 5 S 0.073 5.927 6 C -0.217 4.217 7 C -0.089 4.089 8 C 0.001 3.999 9 O -0.494 6.494 10 C -0.111 4.111 11 C -0.172 4.172 12 C 0.112 3.888 13 C -0.476 4.476 14 H 0.081 0.919 15 C 0.040 3.960 16 N -0.809 5.809 17 Si 0.984 3.016 18 H -0.257 1.257 19 H -0.264 1.264 20 H -0.259 1.259 21 H 0.122 0.878 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.190 0.810 25 H 0.379 0.621 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.219 -1.792 3.400 8.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.229 6.229 3 C 0.060 3.940 4 C -0.450 4.450 5 S 0.332 5.668 6 C -0.332 4.332 7 C -0.097 4.097 8 C -0.047 4.047 9 O -0.302 6.302 10 C -0.131 4.131 11 C -0.196 4.196 12 C 0.106 3.894 13 C -0.504 4.504 14 H 0.099 0.901 15 C -0.177 4.177 16 N -0.434 5.434 17 Si 0.804 3.196 18 H -0.181 1.181 19 H -0.188 1.188 20 H -0.183 1.183 21 H 0.140 0.860 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.207 0.793 25 H 0.233 0.767 26 H 0.142 0.858 27 H 0.139 0.861 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.235 -0.419 2.628 7.709 hybrid contribution 0.414 -0.933 0.439 1.111 sum -6.820 -1.352 3.067 7.599 Atomic orbital electron populations 1.23334 0.76788 1.05467 1.01944 1.86106 1.22811 1.25147 1.88860 1.18672 0.90075 0.85302 0.99933 1.24868 1.04354 0.95288 1.20444 1.83216 0.93709 1.07685 1.82174 1.22588 0.98041 0.94595 1.17978 1.18898 0.90430 0.93503 1.06845 1.17892 0.90060 0.82152 1.14610 1.84713 1.90763 1.21495 1.33276 1.21017 0.94268 0.96802 1.01031 1.21060 0.99293 0.90965 1.08242 1.17323 0.87793 0.94802 0.89432 1.19629 1.02023 0.93104 1.35681 0.90092 1.26761 0.96145 1.03231 0.91582 1.69913 1.13970 1.38630 1.20872 0.85214 0.77958 0.76547 0.79929 1.18121 1.18801 1.18334 0.85954 0.91798 0.92350 0.79315 0.76703 0.85783 0.86114 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.92 113.37 1.13 1.57 15 2 O -0.32 -11.38 9.89 -89.58 -0.89 -12.26 15 3 C 0.12 4.88 6.84 23.11 0.16 5.04 15 4 C -0.32 -11.73 9.94 66.76 0.66 -11.06 15 5 S 0.07 3.08 22.81 -56.49 -1.29 1.80 15 6 C -0.22 -10.99 6.36 23.51 0.15 -10.84 15 7 C -0.09 -4.32 6.04 -20.24 -0.12 -4.44 15 8 C 0.00 0.04 6.78 23.26 0.16 0.20 15 9 O -0.49 -20.53 12.77 -83.12 -1.06 -21.59 15 10 C -0.11 -5.30 9.90 22.21 0.22 -5.08 15 11 C -0.17 -8.95 8.65 22.68 0.20 -8.75 15 12 C 0.11 6.02 5.59 -21.09 -0.12 5.90 15 13 C -0.48 -24.79 8.80 23.26 0.20 -24.58 15 14 H 0.08 4.09 7.74 -2.91 -0.02 4.07 15 15 C 0.04 1.94 5.11 85.18 0.44 2.37 15 16 N -0.81 -40.40 10.98 21.80 0.24 -40.16 15 17 Si 0.98 36.28 29.60 68.60 2.03 38.31 15 18 H -0.26 -9.26 7.11 99.48 0.71 -8.55 15 19 H -0.26 -9.13 7.11 99.48 0.71 -8.42 15 20 H -0.26 -9.35 7.11 99.48 0.71 -8.65 15 21 H 0.12 2.11 8.14 -2.39 -0.02 2.09 15 22 H 0.06 1.29 7.84 -2.38 -0.02 1.27 15 23 H 0.06 1.25 7.84 -2.39 -0.02 1.23 15 24 H 0.19 5.39 6.91 -2.91 -0.02 5.37 15 25 H 0.38 12.15 9.06 -74.06 -0.67 11.48 15 26 H 0.12 5.21 8.06 -2.91 -0.02 5.18 15 27 H 0.12 6.33 6.17 -2.91 -0.02 6.32 15 28 H 0.30 13.19 8.30 -92.71 -0.77 12.42 15 Total: -1.00 -62.44 261.36 2.64 -59.80 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.54 Total: 23.80 kcal Atomic # 6 Polarization: -52.75 SS G_CDS: 3.07 Total: -49.68 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.24 Total: -40.16 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -1.95 Total: -33.86 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.31 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.29 Total: 1.80 kcal Total: -62.44 2.64 -59.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396389437.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.532 kcal (2) G-P(sol) polarization free energy of solvation -62.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds