Wall clock time and date at job start Mon Mar 30 2020 05:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35964 * 117.00127 * 2 1 4 4 C 1.38344 * 119.68419 * 179.97438 * 3 2 1 5 5 C 1.41273 * 120.86051 * 180.02562 * 4 3 2 6 6 C 1.45701 * 129.10623 * 179.97438 * 5 4 3 7 7 O 1.36160 * 122.61598 * 359.96040 * 6 5 4 8 8 C 1.32179 * 114.77518 * 179.97438 * 6 5 4 9 9 S 1.75288 * 111.33559 * 0.02562 * 8 6 5 10 10 C 1.39445 * 119.06075 * 359.95744 * 5 4 3 11 11 C 1.42216 * 119.74597 * 0.02562 * 10 5 4 12 12 C 1.40894 * 120.07257 * 180.02562 * 11 10 5 13 13 H 1.08004 * 119.99923 * 25.07162 * 12 11 10 14 14 C 1.39853 * 120.00444 * 205.06403 * 12 11 10 15 15 N 1.30913 * 119.99165 * 18.00055 * 14 12 11 16 16 Si 1.86790 * 120.00525 * 198.00174 * 14 12 11 17 17 H 1.48498 * 109.47110 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47226 * 119.99953 * 16 14 12 19 19 H 1.48497 * 109.47295 * 240.00004 * 16 14 12 20 20 C 1.38268 * 119.68272 * 359.97438 * 3 2 1 21 21 H 1.09004 * 109.46740 * 60.00546 * 1 2 3 22 22 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47365 * 300.01011 * 1 2 3 24 24 H 1.07997 * 119.57045 * 359.97357 * 4 3 2 25 25 H 0.96702 * 113.99832 * 269.99777 * 7 6 5 26 26 H 1.07997 * 124.32771 * 179.97438 * 8 6 5 27 27 H 0.97007 * 119.99803 * 179.97438 * 15 14 12 28 28 H 1.08001 * 120.07681 * 0.26009 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4282 1.2762 0.0005 5 6 4.0953 2.5215 0.0011 6 6 5.5259 2.7977 0.0022 7 8 6.4639 1.8108 0.0037 8 6 5.8422 4.0811 0.0020 9 16 4.4096 5.0911 0.0010 10 6 3.3407 3.6941 0.0002 11 6 1.9205 3.6193 -0.0007 12 6 1.1513 4.7998 -0.0022 13 1 1.5666 5.7144 -0.3990 14 6 -0.1500 4.7872 0.5100 15 7 -0.5343 3.8137 1.2964 16 14 -1.3395 6.1592 0.0721 17 1 -0.6654 7.1308 -0.8261 18 1 -2.5232 5.5866 -0.6181 19 1 -1.7758 6.8506 1.3117 20 6 1.2869 2.3669 -0.0005 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5140 0.8899 24 1 4.0046 0.3629 0.0014 25 1 6.7341 1.5263 0.8875 26 1 6.8539 4.4590 0.0031 27 1 -1.4368 3.8051 1.6520 28 1 0.2086 2.3059 0.0033 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396389492.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:19 Heat of formation + Delta-G solvation = -67.360906 kcal Electronic energy + Delta-G solvation = -15713.310511 eV Core-core repulsion = 13013.047534 eV Total energy + Delta-G solvation = -2700.262977 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.72852 -39.48010 -37.77473 -35.80402 -33.62417 -31.70181 -29.39426 -28.40618 -27.03978 -23.82554 -23.02638 -21.60941 -19.83424 -18.27454 -18.11042 -17.59985 -16.79900 -16.70360 -16.42304 -16.21863 -15.69120 -14.70266 -14.50986 -14.21719 -13.88245 -13.33564 -13.13719 -12.92765 -12.91575 -12.49054 -12.39899 -12.09657 -11.80833 -11.79307 -11.32294 -11.10394 -10.80842 -9.90684 -9.02460 -8.80651 -8.29720 -6.46819 0.08731 0.80131 0.93070 1.31230 1.37972 1.42243 1.52416 1.61918 2.15532 2.59306 2.60971 3.40665 3.52462 4.03626 4.40869 4.44960 4.54493 4.63959 4.76524 4.81594 4.93800 5.08131 5.12736 5.26602 5.59048 5.68312 5.78335 6.05864 6.28771 6.59771 6.71953 6.84426 6.89704 8.17880 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.010061 C = 0.006718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.322234 B = 2782.369924 C = 4167.153043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.341 6.341 3 C 0.144 3.856 4 C -0.255 4.255 5 C -0.050 4.050 6 C 0.083 3.917 7 O -0.487 6.487 8 C -0.225 4.225 9 S 0.091 5.909 10 C -0.261 4.261 11 C 0.143 3.857 12 C -0.477 4.477 13 H 0.082 0.918 14 C 0.042 3.958 15 N -0.805 5.805 16 Si 0.983 3.017 17 H -0.258 1.258 18 H -0.260 1.260 19 H -0.262 1.262 20 C -0.275 4.275 21 H 0.045 0.955 22 H 0.126 0.874 23 H 0.046 0.954 24 H 0.112 0.888 25 H 0.402 0.598 26 H 0.197 0.803 27 H 0.295 0.705 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.359 -0.059 0.016 2.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.255 6.255 3 C 0.098 3.902 4 C -0.277 4.277 5 C -0.058 4.058 6 C 0.025 3.975 7 O -0.298 6.298 8 C -0.359 4.359 9 S 0.352 5.648 10 C -0.376 4.376 11 C 0.137 3.863 12 C -0.505 4.505 13 H 0.100 0.900 14 C -0.176 4.176 15 N -0.429 5.429 16 Si 0.803 3.197 17 H -0.181 1.181 18 H -0.184 1.184 19 H -0.187 1.187 20 C -0.298 4.298 21 H 0.064 0.936 22 H 0.144 0.856 23 H 0.064 0.936 24 H 0.130 0.870 25 H 0.260 0.740 26 H 0.214 0.786 27 H 0.106 0.894 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.044 1.274 -0.431 2.447 hybrid contribution -0.543 -1.138 0.504 1.358 sum 1.501 0.136 0.073 1.509 Atomic orbital electron populations 1.23063 0.77618 1.04343 1.01073 1.85889 1.22563 1.27658 1.89416 1.18698 0.91953 0.84050 0.95468 1.19402 0.90742 0.95598 1.22006 1.19130 0.92432 0.92985 1.01232 1.18044 0.85796 0.87914 1.05776 1.84804 1.56158 1.54125 1.34757 1.25365 1.04212 0.95949 1.10387 1.83288 0.93656 1.07641 1.80205 1.22738 0.97679 0.95805 1.21329 1.17087 0.88132 0.93985 0.87062 1.19744 0.98747 0.96235 1.35801 0.90022 1.26774 0.99700 0.99603 0.91518 1.69898 1.20198 1.32024 1.20783 0.85136 0.77402 0.77742 0.79463 1.18116 1.18414 1.18680 1.21251 0.99842 0.90738 1.17962 0.93608 0.85622 0.93552 0.86992 0.74050 0.78639 0.89449 0.85083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.19 9.80 113.37 1.11 2.30 15 2 O -0.34 -15.04 10.49 -93.14 -0.98 -16.02 15 3 C 0.14 7.18 6.65 22.30 0.15 7.33 15 4 C -0.25 -12.45 10.01 23.04 0.23 -12.22 15 5 C -0.05 -2.40 6.04 -20.31 -0.12 -2.52 15 6 C 0.08 3.30 6.91 23.19 0.16 3.46 15 7 O -0.49 -16.24 13.61 -95.38 -1.30 -17.54 15 8 C -0.22 -7.95 10.99 66.81 0.73 -7.21 15 9 S 0.09 3.71 22.81 -56.49 -1.29 2.42 15 10 C -0.26 -13.08 6.36 23.55 0.15 -12.93 15 11 C 0.14 7.70 5.59 -21.12 -0.12 7.58 15 12 C -0.48 -24.76 8.81 23.31 0.21 -24.56 15 13 H 0.08 4.13 7.74 -2.91 -0.02 4.10 15 14 C 0.04 1.99 5.12 85.22 0.44 2.43 15 15 N -0.80 -39.30 10.98 21.81 0.24 -39.06 15 16 Si 0.98 35.81 29.60 68.60 2.03 37.84 15 17 H -0.26 -9.34 7.11 99.48 0.71 -8.63 15 18 H -0.26 -9.01 7.11 99.48 0.71 -8.30 15 19 H -0.26 -9.12 7.11 99.48 0.71 -8.41 15 20 C -0.27 -14.43 7.65 22.79 0.17 -14.25 15 21 H 0.05 1.61 7.65 -2.39 -0.02 1.59 15 22 H 0.13 3.26 8.14 -2.39 -0.02 3.24 15 23 H 0.05 1.72 7.64 -2.39 -0.02 1.71 15 24 H 0.11 5.09 8.06 -2.91 -0.02 5.07 15 25 H 0.40 9.19 9.07 -74.06 -0.67 8.52 15 26 H 0.20 5.24 8.06 -2.91 -0.02 5.21 15 27 H 0.29 12.73 8.30 -92.70 -0.77 11.96 15 28 H 0.13 6.80 4.34 -2.91 -0.01 6.79 15 Total: -1.00 -62.47 261.73 2.36 -60.11 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.54 Total: 22.84 kcal Atomic # 6 Polarization: -53.71 SS G_CDS: 3.11 Total: -50.60 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.24 Total: -39.06 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -2.28 Total: -33.55 kcal Atomic # 14 Polarization: 35.81 SS G_CDS: 2.03 Total: 37.84 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -1.29 Total: 2.42 kcal Total: -62.47 2.36 -60.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396389492.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.254 kcal (2) G-P(sol) polarization free energy of solvation -62.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds