Wall clock time and date at job start Mon Mar 30 2020 05:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35581 * 116.99941 * 2 1 4 4 S 1.75455 * 124.65424 * 359.97438 * 3 2 1 5 5 C 1.76038 * 91.64069 * 180.02562 * 4 3 2 6 6 C 1.38586 * 130.30734 * 179.97438 * 5 4 3 7 7 C 1.40518 * 120.02381 * 179.17296 * 6 5 4 8 8 C 1.40885 * 120.19266 * 180.27405 * 7 6 5 9 9 H 1.07994 * 120.00070 * 205.20730 * 8 7 6 10 10 C 1.39635 * 119.99790 * 25.20181 * 8 7 6 11 11 N 1.31036 * 120.00181 * 17.89716 * 10 8 7 12 12 Si 1.86804 * 120.00027 * 197.89488 * 10 8 7 13 13 H 1.48500 * 109.47362 * 90.00392 * 12 10 8 14 14 H 1.48503 * 109.46862 * 210.00135 * 12 10 8 15 15 H 1.48494 * 109.46840 * 330.00048 * 12 10 8 16 16 C 1.41281 * 119.61564 * 0.76866 * 7 6 5 17 17 C 1.35140 * 120.36701 * 359.52292 * 16 7 6 18 18 C 1.40549 * 109.56692 * 359.74012 * 5 4 3 19 19 C 1.34082 * 124.64345 * 180.02562 * 3 2 1 20 20 O 1.36196 * 122.20070 * 359.97438 * 19 3 2 21 21 H 1.09004 * 109.47264 * 59.99588 * 1 2 3 22 22 H 1.08997 * 109.47285 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46692 * 299.99740 * 1 2 3 24 24 H 1.08000 * 119.98735 * 0.02562 * 6 5 4 25 25 H 0.97005 * 120.00371 * 180.02562 * 11 10 8 26 26 H 1.08002 * 119.81192 * 179.50498 * 16 7 6 27 27 H 1.07993 * 119.57666 * 179.97438 * 17 16 7 28 28 H 0.96698 * 113.99510 * 90.02303 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2080 0.0000 4 16 1.2115 2.7522 -0.0006 5 6 2.7362 3.6321 -0.0010 6 6 2.9845 4.9955 -0.0020 7 6 4.3073 5.4693 0.0154 8 6 4.5637 6.8546 0.0203 9 1 5.4990 7.2320 -0.3657 10 6 3.6083 7.7397 0.5240 11 7 2.6485 7.2967 1.2983 12 14 3.6985 9.5553 0.0940 13 1 2.9197 9.8101 -1.1444 14 1 3.1320 10.3566 1.2086 15 1 5.1154 9.9426 -0.1238 16 6 5.3788 4.5484 0.0175 17 6 5.1369 3.2189 0.0126 18 6 3.8058 2.7203 0.0054 19 6 3.3735 1.3864 -0.0005 20 8 4.2461 0.3407 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 2.1609 5.6941 -0.0024 25 1 1.9846 7.9114 1.6480 26 1 6.3967 4.9092 0.0229 27 1 5.9656 2.5263 0.0138 28 1 4.4980 0.0388 -0.8840 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396391048.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:39 Heat of formation + Delta-G solvation = -44.389057 kcal Electronic energy + Delta-G solvation = -15435.508268 eV Core-core repulsion = 12736.241425 eV Total energy + Delta-G solvation = -2699.266843 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.04991 -37.87124 -36.49800 -34.14737 -32.14298 -29.50558 -28.71439 -26.92607 -24.80588 -22.19106 -21.34834 -20.00852 -17.84450 -17.58224 -16.88151 -15.74466 -15.51755 -15.36642 -14.82479 -14.28691 -13.56707 -13.32681 -12.80164 -12.52654 -12.28812 -11.91853 -11.80520 -11.43603 -11.30044 -11.14568 -10.83184 -10.63562 -10.19165 -9.81217 -9.66376 -9.45791 -9.08973 -8.31708 -7.28208 -6.99994 -6.69474 -4.51611 1.78251 2.14361 2.69963 2.71808 2.85585 2.95986 2.98836 3.32767 3.74576 3.75349 4.37452 5.09979 5.32736 5.35111 5.40895 5.59904 5.95737 6.29315 6.54824 6.61468 6.77501 6.86750 7.05577 7.17184 7.40578 7.56310 7.67000 7.74368 7.93324 8.29803 8.32242 8.58103 8.64651 9.90364 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.036277 B = 0.006496 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.659736 B = 4309.045821 C = 4994.773210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.284 6.284 3 C -0.074 4.074 4 S 0.010 5.990 5 C -0.070 4.070 6 C -0.154 4.154 7 C 0.124 3.876 8 C -0.436 4.436 9 H 0.087 0.913 10 C 0.071 3.929 11 N -0.774 5.774 12 Si 0.915 3.085 13 H -0.265 1.265 14 H -0.275 1.275 15 H -0.259 1.259 16 C -0.195 4.195 17 C -0.046 4.046 18 C -0.210 4.210 19 C 0.103 3.897 20 O -0.481 6.481 21 H 0.052 0.948 22 H 0.097 0.903 23 H 0.052 0.948 24 H 0.125 0.875 25 H 0.287 0.713 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.758 -4.693 -3.186 6.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.199 6.199 3 C -0.232 4.232 4 S 0.266 5.734 5 C -0.184 4.184 6 C -0.180 4.180 7 C 0.118 3.882 8 C -0.465 4.465 9 H 0.105 0.895 10 C -0.150 4.150 11 N -0.398 5.398 12 Si 0.739 3.261 13 H -0.190 1.190 14 H -0.200 1.200 15 H -0.183 1.183 16 C -0.214 4.214 17 C -0.066 4.066 18 C -0.215 4.215 19 C 0.047 3.953 20 O -0.289 6.289 21 H 0.070 0.930 22 H 0.115 0.885 23 H 0.071 0.929 24 H 0.143 0.857 25 H 0.098 0.902 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -4.403 -4.454 -2.403 6.708 hybrid contribution 1.081 0.420 -0.507 1.266 sum -3.321 -4.034 -2.910 5.981 Atomic orbital electron populations 1.23047 0.79303 1.03305 1.01452 1.85830 1.19902 1.23329 1.90867 1.22840 0.94357 0.88013 1.17969 1.83733 1.09711 0.95779 1.84187 1.21789 0.92319 0.97600 1.06732 1.20541 0.97828 0.90024 1.09632 1.17490 0.90349 0.93023 0.87314 1.19610 1.02466 0.90929 1.33510 0.89484 1.26026 0.94073 1.02319 0.92535 1.69914 1.11122 1.38266 1.20487 0.86183 0.80069 0.80631 0.79248 1.18965 1.20032 1.18306 1.20695 0.98226 0.92615 1.09869 1.20141 0.93121 0.95031 0.98337 1.17350 0.94211 0.89901 1.20077 1.16619 0.84903 0.86553 1.07225 1.84869 1.63256 1.48688 1.32079 0.92975 0.88493 0.92907 0.85745 0.90242 0.87782 0.88227 0.77424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.24 101.05 1.03 1.39 15 2 O -0.28 -5.33 10.49 -26.91 -0.28 -5.61 15 3 C -0.07 -1.56 7.18 29.27 0.21 -1.35 15 4 S 0.01 0.20 21.96 -107.50 -2.36 -2.16 15 5 C -0.07 -1.70 6.45 -38.58 -0.25 -1.95 15 6 C -0.15 -3.94 8.72 -38.59 -0.34 -4.27 15 7 C 0.12 3.15 5.56 -106.88 -0.59 2.55 15 8 C -0.44 -10.70 9.01 -38.06 -0.34 -11.04 15 9 H 0.09 2.00 7.90 -52.49 -0.41 1.59 15 10 C 0.07 1.66 5.12 -17.37 -0.09 1.57 15 11 N -0.77 -18.93 10.98 55.53 0.61 -18.32 15 12 Si 0.92 17.30 29.59 -169.99 -5.03 12.27 15 13 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 14 H -0.28 -5.12 7.11 56.52 0.40 -4.72 15 15 H -0.26 -4.82 7.11 56.52 0.40 -4.41 15 16 C -0.19 -4.52 9.68 -39.53 -0.38 -4.90 15 17 C -0.05 -1.04 9.91 -39.19 -0.39 -1.43 15 18 C -0.21 -4.97 5.89 -106.78 -0.63 -5.60 15 19 C 0.10 2.28 6.74 -40.30 -0.27 2.00 15 20 O -0.48 -9.46 13.47 -28.83 -0.39 -9.85 15 21 H 0.05 0.68 8.03 -51.93 -0.42 0.26 15 22 H 0.10 1.01 8.14 -51.93 -0.42 0.58 15 23 H 0.05 0.71 8.03 -51.93 -0.42 0.30 15 24 H 0.12 3.26 6.16 -52.49 -0.32 2.94 15 25 H 0.29 6.33 8.30 -40.82 -0.34 5.99 15 26 H 0.10 2.18 8.06 -52.49 -0.42 1.76 15 27 H 0.10 1.99 8.06 -52.49 -0.42 1.57 15 28 H 0.37 5.45 9.07 45.56 0.41 5.86 15 LS Contribution 264.04 15.07 3.98 3.98 Total: -1.00 -28.52 264.04 -7.07 -35.59 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -1.56 Total: 7.13 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -2.04 Total: -23.03 kcal Atomic # 7 Polarization: -18.93 SS G_CDS: 0.61 Total: -18.32 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.67 Total: -15.46 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Atomic # 16 Polarization: 0.20 SS G_CDS: -2.36 Total: -2.16 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.52 -7.07 -35.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396391048.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.800 kcal (2) G-P(sol) polarization free energy of solvation -28.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds