Wall clock time and date at job start Mon Mar 30 2020 05:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35581 * 116.99941 * 2 1 4 4 S 1.75455 * 124.65424 * 359.97438 * 3 2 1 5 5 C 1.76038 * 91.64069 * 180.02562 * 4 3 2 6 6 C 1.38586 * 130.30734 * 179.97438 * 5 4 3 7 7 C 1.40518 * 120.02381 * 179.17296 * 6 5 4 8 8 C 1.40885 * 120.19266 * 180.27405 * 7 6 5 9 9 H 1.07994 * 120.00070 * 205.20730 * 8 7 6 10 10 C 1.39635 * 119.99790 * 25.20181 * 8 7 6 11 11 N 1.31036 * 120.00181 * 17.89716 * 10 8 7 12 12 Si 1.86804 * 120.00027 * 197.89488 * 10 8 7 13 13 H 1.48500 * 109.47362 * 90.00392 * 12 10 8 14 14 H 1.48503 * 109.46862 * 210.00135 * 12 10 8 15 15 H 1.48494 * 109.46840 * 330.00048 * 12 10 8 16 16 C 1.41281 * 119.61564 * 0.76866 * 7 6 5 17 17 C 1.35140 * 120.36701 * 359.52292 * 16 7 6 18 18 C 1.40549 * 109.56692 * 359.74012 * 5 4 3 19 19 C 1.34082 * 124.64345 * 180.02562 * 3 2 1 20 20 O 1.36196 * 122.20070 * 359.97438 * 19 3 2 21 21 H 1.09004 * 109.47264 * 59.99588 * 1 2 3 22 22 H 1.08997 * 109.47285 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46692 * 299.99740 * 1 2 3 24 24 H 1.08000 * 119.98735 * 0.02562 * 6 5 4 25 25 H 0.97005 * 120.00371 * 180.02562 * 11 10 8 26 26 H 1.08002 * 119.81192 * 179.50498 * 16 7 6 27 27 H 1.07993 * 119.57666 * 179.97438 * 17 16 7 28 28 H 0.96698 * 113.99510 * 90.02303 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2080 0.0000 4 16 1.2115 2.7522 -0.0006 5 6 2.7362 3.6321 -0.0010 6 6 2.9845 4.9955 -0.0020 7 6 4.3073 5.4693 0.0154 8 6 4.5637 6.8546 0.0203 9 1 5.4990 7.2320 -0.3657 10 6 3.6083 7.7397 0.5240 11 7 2.6485 7.2967 1.2983 12 14 3.6985 9.5553 0.0940 13 1 2.9197 9.8101 -1.1444 14 1 3.1320 10.3566 1.2086 15 1 5.1154 9.9426 -0.1238 16 6 5.3788 4.5484 0.0175 17 6 5.1369 3.2189 0.0126 18 6 3.8058 2.7203 0.0054 19 6 3.3735 1.3864 -0.0005 20 8 4.2461 0.3407 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 2.1609 5.6941 -0.0024 25 1 1.9846 7.9114 1.6480 26 1 6.3967 4.9092 0.0229 27 1 5.9656 2.5263 0.0138 28 1 4.4980 0.0388 -0.8840 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396391048.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:39 Heat of formation + Delta-G solvation = -62.437951 kcal Electronic energy + Delta-G solvation = -15436.290927 eV Core-core repulsion = 12736.241425 eV Total energy + Delta-G solvation = -2700.049502 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.67746 -39.45553 -38.09360 -35.87856 -33.85894 -31.30985 -30.37025 -28.30365 -26.46313 -23.92490 -23.10682 -21.69580 -19.55593 -19.23771 -18.43781 -17.35784 -17.20564 -16.82840 -16.39605 -15.81799 -15.14000 -15.08280 -14.49158 -14.11296 -13.94701 -13.59402 -13.21503 -13.02539 -12.87013 -12.60622 -12.44242 -12.21164 -11.82177 -11.49434 -11.34483 -11.17967 -10.81422 -10.08087 -9.03453 -8.73796 -8.41016 -6.35554 0.07003 0.47226 0.87564 0.97845 1.28087 1.40796 1.54497 1.66391 2.17338 2.34572 2.62302 3.52182 3.61630 4.20867 4.28216 4.30397 4.55059 4.63777 4.83368 4.88234 4.99247 5.13012 5.26627 5.38886 5.71890 5.79132 5.94651 6.08721 6.11250 6.47812 6.76550 6.83233 6.89796 8.19734 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.036277 B = 0.006496 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.659736 B = 4309.045821 C = 4994.773210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.292 6.292 3 C -0.062 4.062 4 S 0.046 5.954 5 C -0.100 4.100 6 C -0.178 4.178 7 C 0.096 3.904 8 C -0.466 4.466 9 H 0.094 0.906 10 C 0.032 3.968 11 N -0.811 5.811 12 Si 0.989 3.011 13 H -0.262 1.262 14 H -0.269 1.269 15 H -0.252 1.252 16 C -0.202 4.202 17 C -0.050 4.050 18 C -0.219 4.219 19 C 0.080 3.920 20 O -0.484 6.484 21 H 0.060 0.940 22 H 0.136 0.864 23 H 0.055 0.945 24 H 0.108 0.892 25 H 0.293 0.707 26 H 0.122 0.878 27 H 0.126 0.874 28 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 -5.361 -3.539 7.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.207 6.207 3 C -0.221 4.221 4 S 0.302 5.698 5 C -0.214 4.214 6 C -0.204 4.204 7 C 0.091 3.909 8 C -0.495 4.495 9 H 0.112 0.888 10 C -0.185 4.185 11 N -0.435 5.435 12 Si 0.809 3.191 13 H -0.187 1.187 14 H -0.193 1.193 15 H -0.175 1.175 16 C -0.222 4.222 17 C -0.070 4.070 18 C -0.225 4.225 19 C 0.024 3.976 20 O -0.294 6.294 21 H 0.079 0.921 22 H 0.154 0.846 23 H 0.073 0.927 24 H 0.126 0.874 25 H 0.104 0.896 26 H 0.140 0.860 27 H 0.144 0.856 28 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -4.723 -5.149 -2.769 7.516 hybrid contribution 1.080 0.388 -0.398 1.215 sum -3.642 -4.762 -3.167 6.780 Atomic orbital electron populations 1.23458 0.76520 1.06196 1.01961 1.85834 1.22630 1.21915 1.90357 1.23039 0.94474 0.88823 1.15715 1.83475 1.07663 0.95106 1.83573 1.22096 0.94664 0.97672 1.06975 1.20450 0.97694 0.90483 1.11809 1.17857 0.90958 0.94090 0.88035 1.19904 1.03557 0.91279 1.34742 0.88797 1.26903 0.93200 1.06715 0.91664 1.69972 1.12004 1.40093 1.21426 0.85086 0.80327 0.74780 0.78936 1.18662 1.19348 1.17491 1.20934 0.98674 0.92856 1.09695 1.20436 0.93727 0.95264 0.97594 1.17727 0.94574 0.90824 1.19361 1.16559 0.85763 0.86485 1.08755 1.84809 1.62778 1.47733 1.34111 0.92101 0.84559 0.92672 0.87426 0.89601 0.85989 0.85641 0.74945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.35 10.24 113.37 1.16 1.51 15 2 O -0.29 -10.18 10.49 -80.80 -0.85 -11.03 15 3 C -0.06 -2.50 7.18 66.87 0.48 -2.02 15 4 S 0.05 1.87 21.96 -56.49 -1.24 0.62 15 5 C -0.10 -4.90 6.45 22.92 0.15 -4.75 15 6 C -0.18 -9.41 8.72 22.91 0.20 -9.21 15 7 C 0.10 5.01 5.56 -21.33 -0.12 4.90 15 8 C -0.47 -23.37 9.01 23.26 0.21 -23.16 15 9 H 0.09 4.38 7.90 -2.91 -0.02 4.36 15 10 C 0.03 1.53 5.12 85.15 0.44 1.97 15 11 N -0.81 -40.66 10.98 21.78 0.24 -40.42 15 12 Si 0.99 35.44 29.59 68.60 2.03 37.47 15 13 H -0.26 -9.19 7.11 99.48 0.71 -8.49 15 14 H -0.27 -9.26 7.11 99.48 0.71 -8.55 15 15 H -0.25 -8.62 7.11 99.48 0.71 -7.91 15 16 C -0.20 -9.47 9.68 22.30 0.22 -9.26 15 17 C -0.05 -2.25 9.91 22.53 0.22 -2.02 15 18 C -0.22 -10.32 5.89 -21.26 -0.13 -10.45 15 19 C 0.08 3.45 6.74 21.80 0.15 3.60 15 20 O -0.48 -18.08 13.47 -87.69 -1.18 -19.26 15 21 H 0.06 1.40 8.03 -2.39 -0.02 1.38 15 22 H 0.14 2.26 8.14 -2.39 -0.02 2.24 15 23 H 0.05 1.34 8.03 -2.39 -0.02 1.32 15 24 H 0.11 5.91 6.16 -2.91 -0.02 5.89 15 25 H 0.29 13.23 8.30 -92.70 -0.77 12.46 15 26 H 0.12 5.09 8.06 -2.91 -0.02 5.07 15 27 H 0.13 4.82 8.06 -2.91 -0.02 4.80 15 28 H 0.39 10.64 9.07 -74.06 -0.67 9.96 15 Total: -1.00 -61.49 264.04 2.51 -58.98 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.53 Total: 22.53 kcal Atomic # 6 Polarization: -51.88 SS G_CDS: 2.98 Total: -48.90 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.24 Total: -40.42 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -2.03 Total: -30.29 kcal Atomic # 14 Polarization: 35.44 SS G_CDS: 2.03 Total: 37.47 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -1.24 Total: 0.62 kcal Total: -61.49 2.51 -58.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396391048.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.461 kcal (2) G-P(sol) polarization free energy of solvation -61.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds