Wall clock time and date at job start Mon Mar 30 2020 05:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35725 * 117.00087 * 2 1 4 4 C 1.38307 * 120.01641 * 359.97438 * 3 2 1 5 5 C 1.37827 * 121.02065 * 180.02562 * 4 3 2 6 6 C 1.39822 * 121.57874 * 359.97438 * 5 4 3 7 7 S 1.76083 * 130.46886 * 180.02562 * 6 5 4 8 8 C 1.75484 * 91.57732 * 180.02562 * 7 6 5 9 9 C 1.33056 * 110.65662 * 359.97438 * 8 7 6 10 10 O 1.36123 * 122.16687 * 179.97438 * 9 8 7 11 11 C 1.39624 * 120.14778 * 0.02562 * 6 5 4 12 12 C 1.40904 * 120.01885 * 179.72252 * 3 2 1 13 13 C 1.40403 * 120.43107 * 359.97438 * 12 3 2 14 14 H 1.08004 * 120.00438 * 140.73731 * 13 12 3 15 15 C 1.39901 * 119.99900 * 320.73824 * 13 12 3 16 16 N 1.30931 * 119.99842 * 339.95348 * 15 13 12 17 17 Si 1.86804 * 120.00140 * 159.94925 * 15 13 12 18 18 H 1.48497 * 109.46776 * 60.00379 * 17 15 13 19 19 H 1.48500 * 109.47215 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47056 * 300.00227 * 17 15 13 21 21 H 1.09001 * 109.47350 * 300.00301 * 1 2 3 22 22 H 1.08998 * 109.47092 * 60.00415 * 1 2 3 23 23 H 1.09008 * 109.47176 * 180.02562 * 1 2 3 24 24 H 1.08005 * 119.48841 * 359.97438 * 4 3 2 25 25 H 1.07998 * 119.21852 * 179.97438 * 5 4 3 26 26 H 1.08009 * 124.67233 * 179.97438 * 8 7 6 27 27 H 0.96701 * 114.00259 * 89.97486 * 10 9 8 28 28 H 0.97001 * 119.99706 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2923 2.3695 -0.0005 5 6 1.8964 3.6083 -0.0011 6 6 3.2880 3.7443 -0.0006 7 16 4.2951 5.1887 -0.0005 8 6 5.7616 4.2250 -0.0005 9 6 5.4702 2.9267 0.0000 10 8 6.4357 1.9672 -0.0005 11 6 4.1033 2.6109 0.0000 12 6 3.4523 1.2835 0.0059 13 6 4.2261 0.1120 0.0124 14 1 5.1306 0.0590 -0.5755 15 6 3.8256 -0.9867 0.7803 16 7 2.9882 -0.8210 1.7730 17 14 4.4856 -2.6899 0.3893 18 1 5.9655 -2.6873 0.5114 19 1 3.9126 -3.6737 1.3427 20 1 4.1038 -3.0626 -0.9965 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.2142 2.3036 -0.0014 25 1 1.2802 4.4953 -0.0019 26 1 6.7629 4.6299 -0.0009 27 1 6.7156 1.6904 0.8828 28 1 2.7108 -1.5828 2.3057 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396391584.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:23 Heat of formation + Delta-G solvation = -34.516425 kcal Electronic energy + Delta-G solvation = -16131.003204 eV Core-core repulsion = 13432.164470 eV Total energy + Delta-G solvation = -2698.838734 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.88911 -37.64660 -35.46851 -33.87886 -32.11550 -29.93385 -27.59625 -26.44830 -25.10267 -22.12283 -21.26188 -19.55532 -18.01746 -16.87267 -15.99476 -15.79935 -15.16408 -14.88699 -14.47637 -14.35126 -13.88605 -12.87909 -12.67884 -12.42131 -12.00738 -11.71618 -11.43868 -11.30006 -11.16436 -10.96697 -10.60990 -10.54446 -10.03898 -10.01812 -9.37185 -9.27103 -9.09723 -7.87815 -7.18239 -6.99234 -6.47780 -4.35358 1.78109 2.63198 2.68338 2.99647 3.02871 3.05986 3.12174 3.39329 3.86925 4.47316 4.57624 5.22626 5.44103 5.78364 5.87928 5.93659 6.03564 6.12587 6.26319 6.55632 6.78152 6.85705 6.98987 7.14895 7.35914 7.47692 7.64529 7.82894 8.26466 8.35432 8.49865 8.64544 8.99403 10.01196 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022662 B = 0.010459 C = 0.007437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.225321 B = 2676.566085 C = 3764.251669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.282 6.282 3 C 0.048 3.952 4 C -0.146 4.146 5 C -0.196 4.196 6 C -0.086 4.086 7 S 0.015 5.985 8 C -0.316 4.316 9 C 0.173 3.827 10 O -0.485 6.485 11 C -0.197 4.197 12 C 0.148 3.852 13 C -0.420 4.420 14 H 0.098 0.902 15 C 0.082 3.918 16 N -0.746 5.746 17 Si 0.912 3.088 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.262 1.262 21 H 0.039 0.961 22 H 0.035 0.965 23 H 0.078 0.922 24 H 0.104 0.896 25 H 0.096 0.904 26 H 0.149 0.851 27 H 0.382 0.618 28 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.998 0.979 -0.091 1.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.195 6.195 3 C 0.001 3.999 4 C -0.167 4.167 5 C -0.222 4.222 6 C -0.201 4.201 7 S 0.273 5.727 8 C -0.449 4.449 9 C 0.118 3.882 10 O -0.294 6.294 11 C -0.203 4.203 12 C 0.142 3.858 13 C -0.446 4.446 14 H 0.116 0.884 15 C -0.141 4.141 16 N -0.368 5.368 17 Si 0.736 3.264 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.186 1.186 21 H 0.058 0.942 22 H 0.054 0.946 23 H 0.096 0.904 24 H 0.122 0.878 25 H 0.114 0.886 26 H 0.167 0.833 27 H 0.237 0.763 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.240 2.244 -0.488 2.610 hybrid contribution 0.202 -2.045 0.493 2.113 sum -1.038 0.199 0.005 1.057 Atomic orbital electron populations 1.22716 0.82549 1.01514 0.99527 1.86162 1.17247 1.26952 1.89160 1.18759 0.91748 0.82967 1.06449 1.20486 0.97759 0.92325 1.06168 1.19207 0.90554 0.95862 1.16620 1.21902 0.96914 0.94251 1.07017 1.83332 0.96928 1.09415 1.82997 1.24532 1.00906 0.95988 1.23521 1.16960 0.86713 0.86576 0.97990 1.84773 1.55232 1.56743 1.32700 1.18965 0.91353 0.92760 1.17185 1.17584 0.88267 0.90145 0.89811 1.19496 1.08190 0.95348 1.21605 0.88427 1.25880 0.93690 1.01122 0.93446 1.69761 1.22311 1.33857 1.10830 0.86282 0.79867 0.80454 0.79756 1.18894 1.20368 1.18612 0.94211 0.94622 0.90378 0.87842 0.88614 0.83290 0.76257 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 9.80 101.05 0.99 1.59 15 2 O -0.28 -6.63 7.40 -18.88 -0.14 -6.77 15 3 C 0.05 1.20 6.16 -38.55 -0.24 0.96 15 4 C -0.15 -3.30 8.97 -39.71 -0.36 -3.66 15 5 C -0.20 -4.45 10.01 -39.14 -0.39 -4.84 15 6 C -0.09 -2.04 6.48 -38.47 -0.25 -2.29 15 7 S 0.02 0.31 23.29 -107.50 -2.50 -2.20 15 8 C -0.32 -6.52 11.07 28.93 0.32 -6.20 15 9 C 0.17 3.96 6.68 -40.61 -0.27 3.69 15 10 O -0.49 -10.21 11.69 -20.13 -0.24 -10.44 15 11 C -0.20 -4.94 6.03 -104.68 -0.63 -5.57 15 12 C 0.15 3.87 5.54 -104.14 -0.58 3.30 15 13 C -0.42 -10.69 8.01 -38.15 -0.31 -11.00 15 14 H 0.10 2.47 6.93 -52.48 -0.36 2.11 15 15 C 0.08 1.96 4.40 -17.31 -0.08 1.89 15 16 N -0.75 -18.30 11.27 55.55 0.63 -17.68 15 17 Si 0.91 18.15 29.61 -169.99 -5.03 13.12 15 18 H -0.26 -5.15 7.11 56.52 0.40 -4.75 15 19 H -0.28 -5.37 7.11 56.52 0.40 -4.97 15 20 H -0.26 -5.29 7.11 56.52 0.40 -4.88 15 21 H 0.04 0.69 7.65 -51.93 -0.40 0.29 15 22 H 0.04 0.58 7.65 -51.93 -0.40 0.18 15 23 H 0.08 1.20 8.14 -51.92 -0.42 0.78 15 24 H 0.10 2.03 6.22 -52.48 -0.33 1.71 15 25 H 0.10 1.93 8.06 -52.49 -0.42 1.51 15 26 H 0.15 2.67 8.06 -52.48 -0.42 2.25 15 27 H 0.38 6.54 9.07 45.56 0.41 6.96 15 28 H 0.29 6.40 8.30 -40.82 -0.34 6.06 15 LS Contribution 257.79 15.07 3.88 3.88 Total: -1.00 -28.34 257.79 -6.66 -34.99 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -1.47 Total: 7.23 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -1.78 Total: -22.13 kcal Atomic # 7 Polarization: -18.30 SS G_CDS: 0.63 Total: -17.68 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.37 Total: -17.21 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -2.50 Total: -2.20 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.34 -6.66 -34.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396391584.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.478 kcal (2) G-P(sol) polarization free energy of solvation -28.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds