Wall clock time and date at job start Mon Mar 30 2020 05:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35725 * 117.00087 * 2 1 4 4 C 1.38307 * 120.01641 * 359.97438 * 3 2 1 5 5 C 1.37827 * 121.02065 * 180.02562 * 4 3 2 6 6 C 1.39822 * 121.57874 * 359.97438 * 5 4 3 7 7 S 1.76083 * 130.46886 * 180.02562 * 6 5 4 8 8 C 1.75484 * 91.57732 * 180.02562 * 7 6 5 9 9 C 1.33056 * 110.65662 * 359.97438 * 8 7 6 10 10 O 1.36123 * 122.16687 * 179.97438 * 9 8 7 11 11 C 1.39624 * 120.14778 * 0.02562 * 6 5 4 12 12 C 1.40904 * 120.01885 * 179.72252 * 3 2 1 13 13 C 1.40403 * 120.43107 * 359.97438 * 12 3 2 14 14 H 1.08004 * 120.00438 * 140.73731 * 13 12 3 15 15 C 1.39901 * 119.99900 * 320.73824 * 13 12 3 16 16 N 1.30931 * 119.99842 * 339.95348 * 15 13 12 17 17 Si 1.86804 * 120.00140 * 159.94925 * 15 13 12 18 18 H 1.48497 * 109.46776 * 60.00379 * 17 15 13 19 19 H 1.48500 * 109.47215 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47056 * 300.00227 * 17 15 13 21 21 H 1.09001 * 109.47350 * 300.00301 * 1 2 3 22 22 H 1.08998 * 109.47092 * 60.00415 * 1 2 3 23 23 H 1.09008 * 109.47176 * 180.02562 * 1 2 3 24 24 H 1.08005 * 119.48841 * 359.97438 * 4 3 2 25 25 H 1.07998 * 119.21852 * 179.97438 * 5 4 3 26 26 H 1.08009 * 124.67233 * 179.97438 * 8 7 6 27 27 H 0.96701 * 114.00259 * 89.97486 * 10 9 8 28 28 H 0.97001 * 119.99706 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2923 2.3695 -0.0005 5 6 1.8964 3.6083 -0.0011 6 6 3.2880 3.7443 -0.0006 7 16 4.2951 5.1887 -0.0005 8 6 5.7616 4.2250 -0.0005 9 6 5.4702 2.9267 0.0000 10 8 6.4357 1.9672 -0.0005 11 6 4.1033 2.6109 0.0000 12 6 3.4523 1.2835 0.0059 13 6 4.2261 0.1120 0.0124 14 1 5.1306 0.0590 -0.5755 15 6 3.8256 -0.9867 0.7803 16 7 2.9882 -0.8210 1.7730 17 14 4.4856 -2.6899 0.3893 18 1 5.9655 -2.6873 0.5114 19 1 3.9126 -3.6737 1.3427 20 1 4.1038 -3.0626 -0.9965 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.2142 2.3036 -0.0014 25 1 1.2802 4.4953 -0.0019 26 1 6.7629 4.6299 -0.0009 27 1 6.7156 1.6904 0.8828 28 1 2.7108 -1.5828 2.3057 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396391584.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:23 Heat of formation + Delta-G solvation = -52.507850 kcal Electronic energy + Delta-G solvation = -16131.783370 eV Core-core repulsion = 13432.164470 eV Total energy + Delta-G solvation = -2699.618900 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.60152 -39.31403 -37.15807 -35.62981 -33.82485 -31.70195 -29.31066 -27.97501 -26.86943 -23.82499 -23.02465 -21.26204 -19.76815 -18.57379 -17.69757 -17.47848 -16.83914 -16.59235 -16.08234 -16.00179 -15.54136 -14.54951 -14.29718 -14.11546 -13.68469 -13.39601 -13.15269 -12.89369 -12.80134 -12.64103 -12.20248 -12.10340 -11.74049 -11.65229 -11.06583 -10.97101 -10.83520 -9.61614 -8.91930 -8.72848 -8.19070 -6.17579 0.04023 0.90249 0.95794 1.28854 1.41711 1.49411 1.52887 1.65243 2.23607 2.71811 2.99066 3.45351 3.78990 4.18472 4.38512 4.45050 4.54112 4.59446 4.76140 4.84738 5.06017 5.11666 5.22617 5.41790 5.62070 5.74151 5.86508 6.05788 6.48800 6.54549 6.82531 6.97450 7.28791 8.30575 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022662 B = 0.010459 C = 0.007437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.225321 B = 2676.566085 C = 3764.251669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.028 3.972 4 C -0.150 4.150 5 C -0.198 4.198 6 C -0.122 4.122 7 S 0.072 5.928 8 C -0.300 4.300 9 C 0.143 3.857 10 O -0.490 6.490 11 C -0.220 4.220 12 C 0.111 3.889 13 C -0.450 4.450 14 H 0.085 0.915 15 C 0.053 3.947 16 N -0.777 5.777 17 Si 0.974 3.026 18 H -0.259 1.259 19 H -0.267 1.267 20 H -0.268 1.268 21 H 0.044 0.956 22 H 0.051 0.949 23 H 0.101 0.899 24 H 0.132 0.868 25 H 0.121 0.879 26 H 0.180 0.820 27 H 0.395 0.605 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.097 1.712 -0.131 2.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C -0.020 4.020 4 C -0.171 4.171 5 C -0.224 4.224 6 C -0.237 4.237 7 S 0.331 5.669 8 C -0.433 4.433 9 C 0.088 3.912 10 O -0.302 6.302 11 C -0.226 4.226 12 C 0.105 3.895 13 C -0.477 4.477 14 H 0.103 0.897 15 C -0.168 4.168 16 N -0.400 5.400 17 Si 0.796 3.204 18 H -0.183 1.183 19 H -0.191 1.191 20 H -0.193 1.193 21 H 0.062 0.938 22 H 0.069 0.931 23 H 0.119 0.881 24 H 0.149 0.851 25 H 0.139 0.861 26 H 0.197 0.803 27 H 0.252 0.748 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.348 2.997 -0.518 3.327 hybrid contribution 0.221 -2.058 0.491 2.127 sum -1.127 0.939 -0.027 1.467 Atomic orbital electron populations 1.22992 0.80102 1.03460 1.00400 1.86102 1.19891 1.26757 1.89209 1.18959 0.91837 0.84053 1.07123 1.20826 0.99196 0.91848 1.05237 1.19621 0.90751 0.96836 1.15169 1.22345 0.97815 0.95868 1.07634 1.83053 0.95130 1.06785 1.81899 1.25019 1.02798 0.95433 1.20074 1.17103 0.86418 0.87681 1.00038 1.84733 1.54663 1.56752 1.34013 1.19445 0.92868 0.93214 1.17073 1.18035 0.89512 0.90987 0.90968 1.19488 1.08470 0.96628 1.23133 0.89708 1.26488 0.93747 1.03799 0.92729 1.69789 1.23691 1.34867 1.11611 0.85363 0.79478 0.76468 0.79140 1.18322 1.19099 1.19286 0.93779 0.93058 0.88055 0.85080 0.86062 0.80261 0.74783 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 9.80 113.37 1.11 2.02 15 2 O -0.31 -14.47 7.40 -90.47 -0.67 -15.14 15 3 C 0.03 1.41 6.16 22.94 0.14 1.55 15 4 C -0.15 -6.68 8.97 22.19 0.20 -6.49 15 5 C -0.20 -8.73 10.01 22.56 0.23 -8.50 15 6 C -0.12 -5.66 6.48 22.99 0.15 -5.51 15 7 S 0.07 2.75 23.29 -56.49 -1.32 1.43 15 8 C -0.30 -11.69 11.07 66.66 0.74 -10.95 15 9 C 0.14 6.50 6.68 21.61 0.14 6.64 15 10 O -0.49 -20.74 11.69 -94.95 -1.11 -21.85 15 11 C -0.22 -11.13 6.03 -19.90 -0.12 -11.25 15 12 C 0.11 5.94 5.54 -19.55 -0.11 5.84 15 13 C -0.45 -23.69 8.01 23.20 0.19 -23.50 15 14 H 0.08 4.49 6.93 -2.91 -0.02 4.47 15 15 C 0.05 2.57 4.40 85.23 0.37 2.94 15 16 N -0.78 -38.79 11.27 21.83 0.25 -38.54 15 17 Si 0.97 37.64 29.61 68.60 2.03 39.67 15 18 H -0.26 -9.65 7.11 99.48 0.71 -8.94 15 19 H -0.27 -9.65 7.11 99.48 0.71 -8.94 15 20 H -0.27 -10.51 7.11 99.48 0.71 -9.81 15 21 H 0.04 1.47 7.65 -2.39 -0.02 1.45 15 22 H 0.05 1.60 7.65 -2.39 -0.02 1.58 15 23 H 0.10 2.97 8.14 -2.38 -0.02 2.95 15 24 H 0.13 4.92 6.22 -2.91 -0.02 4.91 15 25 H 0.12 4.58 8.06 -2.91 -0.02 4.56 15 26 H 0.18 5.79 8.06 -2.91 -0.02 5.77 15 27 H 0.40 13.69 9.07 -74.06 -0.67 13.02 15 28 H 0.29 13.17 8.30 -92.71 -0.77 12.40 15 Total: -1.00 -60.98 257.79 2.76 -58.22 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.54 Total: 23.42 kcal Atomic # 6 Polarization: -50.25 SS G_CDS: 3.04 Total: -47.21 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.25 Total: -38.54 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -1.78 Total: -36.99 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.32 Total: 1.43 kcal Total: -60.98 2.76 -58.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396391584.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.708 kcal (2) G-P(sol) polarization free energy of solvation -60.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds