Wall clock time and date at job start Mon Mar 30 2020 05:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35820 * 117.00342 * 2 1 4 4 C 1.38751 * 120.02681 * 91.51609 * 3 2 1 5 5 O 1.36035 * 119.54853 * 359.75138 * 4 3 2 6 6 C 1.38158 * 120.90652 * 179.72428 * 4 3 2 7 7 C 1.39898 * 121.52158 * 0.02562 * 6 4 3 8 8 S 1.76097 * 130.47475 * 180.02562 * 7 6 4 9 9 C 1.75503 * 91.51546 * 179.97438 * 8 7 6 10 10 C 1.32615 * 110.65664 * 359.97438 * 9 8 7 11 11 C 1.39521 * 120.20086 * 359.97438 * 7 6 4 12 12 C 1.40705 * 120.02522 * 271.24562 * 3 2 1 13 13 C 1.40440 * 120.39187 * 0.24940 * 12 3 2 14 14 H 1.08003 * 120.00394 * 319.36904 * 13 12 3 15 15 C 1.39946 * 120.00259 * 139.36555 * 13 12 3 16 16 N 1.30899 * 119.99784 * 340.05499 * 15 13 12 17 17 Si 1.86795 * 120.00329 * 160.04847 * 15 13 12 18 18 H 1.48503 * 109.47082 * 60.00777 * 17 15 13 19 19 H 1.48509 * 109.47494 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47569 * 300.00576 * 17 15 13 21 21 H 1.08996 * 109.46587 * 59.99702 * 1 2 3 22 22 H 1.09002 * 109.46872 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46535 * 300.00136 * 1 2 3 24 24 H 0.96703 * 114.00142 * 89.99445 * 5 4 3 25 25 H 1.08005 * 119.24319 * 180.02562 * 6 4 3 26 26 H 1.07998 * 124.67323 * 179.97438 * 9 8 7 27 27 H 1.07996 * 122.09895 * 180.02562 * 10 9 8 28 28 H 0.97003 * 120.00515 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2101 0.0000 4 6 2.3893 1.8143 1.2009 5 8 2.0996 1.1888 2.3736 6 6 3.0221 3.0423 1.2219 7 6 3.3395 3.7219 0.0410 8 16 4.1327 5.2745 -0.2064 9 6 4.0032 5.1156 -1.9494 10 6 3.4075 3.9755 -2.2722 11 6 3.0190 3.1646 -1.1973 12 6 2.3418 1.8495 -1.2179 13 6 1.9987 1.2462 -2.4389 14 1 2.1333 0.1829 -2.5726 15 6 1.4822 2.0226 -3.4823 16 7 0.9559 3.1939 -3.2280 17 14 1.5441 1.3879 -5.2380 18 1 0.7871 0.1136 -5.3307 19 1 0.9376 2.3917 -6.1491 20 1 2.9571 1.1539 -5.6304 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 2.8012 0.6039 2.6912 25 1 3.2777 3.4879 2.1720 26 1 4.3594 5.8456 -2.6611 27 1 3.2329 3.6899 -3.2990 28 1 0.5982 3.7323 -3.9512 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396391648.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:25 Heat of formation + Delta-G solvation = -41.712882 kcal Electronic energy + Delta-G solvation = -16130.658973 eV Core-core repulsion = 13431.508177 eV Total energy + Delta-G solvation = -2699.150796 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.95186 -36.75972 -36.30676 -33.80910 -32.67486 -29.75151 -27.50891 -25.91637 -25.02707 -22.34581 -21.36050 -19.35086 -18.43232 -16.52795 -16.26072 -15.79610 -15.68650 -14.92455 -14.55416 -13.82444 -13.54188 -13.11462 -12.93775 -12.35765 -12.19782 -11.82932 -11.60817 -11.42588 -11.10588 -10.80645 -10.66223 -10.49567 -10.23591 -9.69829 -9.60281 -9.21429 -8.56940 -8.20994 -7.18645 -7.11964 -6.62335 -4.64313 1.76048 2.41409 2.58415 2.93430 2.94139 2.99267 3.01320 3.39260 3.73425 4.26566 4.81207 5.16384 5.37224 5.89238 6.08487 6.23855 6.26118 6.48712 6.54711 6.57931 6.77747 6.83500 6.97167 7.05726 7.29308 7.47781 7.58520 7.73764 8.06890 8.33567 8.34859 8.53091 8.99214 9.86692 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.013047 C = 0.007692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.091537 B = 2145.619352 C = 3639.400183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.318 6.318 3 C -0.069 4.069 4 C 0.154 3.846 5 O -0.505 6.505 6 C -0.235 4.235 7 C -0.074 4.074 8 S 0.006 5.994 9 C -0.268 4.268 10 C -0.032 4.032 11 C -0.128 4.128 12 C 0.165 3.835 13 C -0.441 4.441 14 H 0.095 0.905 15 C 0.078 3.922 16 N -0.767 5.767 17 Si 0.905 3.095 18 H -0.261 1.261 19 H -0.275 1.275 20 H -0.258 1.258 21 H 0.043 0.957 22 H 0.069 0.931 23 H 0.029 0.971 24 H 0.379 0.621 25 H 0.105 0.895 26 H 0.146 0.854 27 H 0.128 0.872 28 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.969 -0.358 0.614 2.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.235 6.235 3 C -0.117 4.117 4 C 0.107 3.893 5 O -0.314 6.314 6 C -0.260 4.260 7 C -0.189 4.189 8 S 0.266 5.734 9 C -0.401 4.401 10 C -0.061 4.061 11 C -0.136 4.136 12 C 0.160 3.840 13 C -0.468 4.468 14 H 0.113 0.887 15 C -0.144 4.144 16 N -0.389 5.389 17 Si 0.729 3.271 18 H -0.185 1.185 19 H -0.200 1.200 20 H -0.183 1.183 21 H 0.062 0.938 22 H 0.088 0.912 23 H 0.048 0.952 24 H 0.233 0.767 25 H 0.123 0.877 26 H 0.164 0.836 27 H 0.145 0.855 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.999 1.164 1.314 2.661 hybrid contribution -0.503 -1.112 -1.694 2.088 sum 1.496 0.052 -0.380 1.544 Atomic orbital electron populations 1.22747 0.82573 1.00446 0.99874 1.85955 1.17954 1.25386 1.94171 1.18454 1.10027 0.92392 0.90802 1.18203 0.96473 0.90964 0.83669 1.84707 1.45590 1.63088 1.37995 1.19575 1.13326 0.97934 0.95144 1.22144 1.03139 0.96729 0.96936 1.83415 1.65213 1.20913 1.03839 1.24626 1.15228 1.03727 0.96481 1.19773 0.94172 0.92340 0.99796 1.19078 1.05378 0.98922 0.90210 1.18450 0.86213 0.87338 0.92030 1.19355 1.35379 0.96653 0.95440 0.88690 1.25997 0.92873 0.94046 1.01519 1.69878 1.23396 1.09966 1.35660 0.86383 0.80271 0.79952 0.80539 1.18498 1.19994 1.18262 0.93837 0.91211 0.95198 0.76659 0.87733 0.83623 0.85455 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 11.13 101.05 1.12 1.92 15 2 O -0.32 -7.46 9.60 -34.54 -0.33 -7.80 15 3 C -0.07 -1.72 5.75 -38.46 -0.22 -1.94 15 4 C 0.15 3.55 6.67 -39.42 -0.26 3.29 15 5 O -0.50 -10.11 13.23 -35.21 -0.47 -10.58 15 6 C -0.23 -5.36 9.93 -38.99 -0.39 -5.75 15 7 C -0.07 -1.75 6.49 -38.48 -0.25 -2.00 15 8 S 0.01 0.12 23.30 -107.50 -2.50 -2.38 15 9 C -0.27 -5.49 11.11 28.83 0.32 -5.17 15 10 C -0.03 -0.73 8.30 -40.77 -0.34 -1.07 15 11 C -0.13 -3.20 5.51 -104.73 -0.58 -3.78 15 12 C 0.17 4.25 5.49 -104.16 -0.57 3.68 15 13 C -0.44 -10.96 8.40 -38.11 -0.32 -11.29 15 14 H 0.10 2.33 7.92 -52.48 -0.42 1.92 15 15 C 0.08 1.80 3.84 -17.31 -0.07 1.73 15 16 N -0.77 -18.43 10.96 55.55 0.61 -17.82 15 17 Si 0.91 17.29 29.60 -169.99 -5.03 12.26 15 18 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 19 H -0.28 -5.11 7.11 56.52 0.40 -4.71 15 20 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 21 H 0.04 0.94 8.14 -51.93 -0.42 0.51 15 22 H 0.07 1.18 8.14 -51.93 -0.42 0.75 15 23 H 0.03 0.60 8.14 -51.93 -0.42 0.17 15 24 H 0.38 5.69 9.07 45.56 0.41 6.10 15 25 H 0.10 2.17 8.06 -52.48 -0.42 1.75 15 26 H 0.15 2.53 8.06 -52.49 -0.42 2.11 15 27 H 0.13 2.91 6.16 -52.49 -0.32 2.59 15 28 H 0.29 6.33 8.30 -40.82 -0.34 6.00 15 LS Contribution 262.62 15.07 3.96 3.96 Total: -1.00 -27.71 262.62 -6.89 -34.60 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -1.57 Total: 8.13 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: -1.55 Total: -20.38 kcal Atomic # 7 Polarization: -18.43 SS G_CDS: 0.61 Total: -17.82 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.80 Total: -18.37 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.50 Total: -2.38 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.71 -6.89 -34.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396391648.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.113 kcal (2) G-P(sol) polarization free energy of solvation -27.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds