Wall clock time and date at job start Mon Mar 30 2020 05:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35820 * 117.00342 * 2 1 4 4 C 1.38751 * 120.02681 * 91.51609 * 3 2 1 5 5 O 1.36035 * 119.54853 * 359.75138 * 4 3 2 6 6 C 1.38158 * 120.90652 * 179.72428 * 4 3 2 7 7 C 1.39898 * 121.52158 * 0.02562 * 6 4 3 8 8 S 1.76097 * 130.47475 * 180.02562 * 7 6 4 9 9 C 1.75503 * 91.51546 * 179.97438 * 8 7 6 10 10 C 1.32615 * 110.65664 * 359.97438 * 9 8 7 11 11 C 1.39521 * 120.20086 * 359.97438 * 7 6 4 12 12 C 1.40705 * 120.02522 * 271.24562 * 3 2 1 13 13 C 1.40440 * 120.39187 * 0.24940 * 12 3 2 14 14 H 1.08003 * 120.00394 * 319.36904 * 13 12 3 15 15 C 1.39946 * 120.00259 * 139.36555 * 13 12 3 16 16 N 1.30899 * 119.99784 * 340.05499 * 15 13 12 17 17 Si 1.86795 * 120.00329 * 160.04847 * 15 13 12 18 18 H 1.48503 * 109.47082 * 60.00777 * 17 15 13 19 19 H 1.48509 * 109.47494 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47569 * 300.00576 * 17 15 13 21 21 H 1.08996 * 109.46587 * 59.99702 * 1 2 3 22 22 H 1.09002 * 109.46872 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46535 * 300.00136 * 1 2 3 24 24 H 0.96703 * 114.00142 * 89.99445 * 5 4 3 25 25 H 1.08005 * 119.24319 * 180.02562 * 6 4 3 26 26 H 1.07998 * 124.67323 * 179.97438 * 9 8 7 27 27 H 1.07996 * 122.09895 * 180.02562 * 10 9 8 28 28 H 0.97003 * 120.00515 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2101 0.0000 4 6 2.3893 1.8143 1.2009 5 8 2.0996 1.1888 2.3736 6 6 3.0221 3.0423 1.2219 7 6 3.3395 3.7219 0.0410 8 16 4.1327 5.2745 -0.2064 9 6 4.0032 5.1156 -1.9494 10 6 3.4075 3.9755 -2.2722 11 6 3.0190 3.1646 -1.1973 12 6 2.3418 1.8495 -1.2179 13 6 1.9987 1.2462 -2.4389 14 1 2.1333 0.1829 -2.5726 15 6 1.4822 2.0226 -3.4823 16 7 0.9559 3.1939 -3.2280 17 14 1.5441 1.3879 -5.2380 18 1 0.7871 0.1136 -5.3307 19 1 0.9376 2.3917 -6.1491 20 1 2.9571 1.1539 -5.6304 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 2.8012 0.6039 2.6912 25 1 3.2777 3.4879 2.1720 26 1 4.3594 5.8456 -2.6611 27 1 3.2329 3.6899 -3.2990 28 1 0.5982 3.7323 -3.9512 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396391648.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:25 Heat of formation + Delta-G solvation = -58.758207 kcal Electronic energy + Delta-G solvation = -16131.398114 eV Core-core repulsion = 13431.508177 eV Total energy + Delta-G solvation = -2699.889936 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.68795 -38.48477 -37.99703 -35.56420 -34.38558 -31.53625 -29.23904 -27.62891 -26.78714 -24.06872 -23.12556 -21.09230 -20.15516 -18.26371 -17.99580 -17.50105 -17.40613 -16.58902 -16.27115 -15.47726 -15.22938 -14.80013 -14.59647 -14.10683 -13.88215 -13.53336 -13.28784 -13.02727 -12.80600 -12.43943 -12.31875 -12.08151 -11.88146 -11.42023 -11.33406 -10.93164 -10.32405 -9.96778 -8.91123 -8.86776 -8.32507 -6.47309 0.02661 0.62951 0.89816 1.30001 1.37316 1.44453 1.48888 1.67119 2.15135 2.52236 3.05555 3.52860 3.61329 4.27809 4.37656 4.57732 4.67825 4.78694 4.82797 4.86868 5.06477 5.07957 5.24702 5.29754 5.58170 5.74146 5.80664 5.98642 6.23380 6.53942 6.66898 6.86145 7.25013 8.16569 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.013047 C = 0.007692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.091537 B = 2145.619352 C = 3639.400183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.330 6.330 3 C -0.095 4.095 4 C 0.151 3.849 5 O -0.505 6.505 6 C -0.239 4.239 7 C -0.107 4.107 8 S 0.063 5.937 9 C -0.253 4.253 10 C -0.061 4.061 11 C -0.149 4.149 12 C 0.135 3.865 13 C -0.467 4.467 14 H 0.085 0.915 15 C 0.049 3.951 16 N -0.795 5.795 17 Si 0.971 3.029 18 H -0.259 1.259 19 H -0.263 1.263 20 H -0.256 1.256 21 H 0.022 0.978 22 H 0.106 0.894 23 H 0.029 0.971 24 H 0.402 0.598 25 H 0.124 0.876 26 H 0.181 0.819 27 H 0.122 0.878 28 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.456 0.376 0.304 2.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.246 6.246 3 C -0.142 4.142 4 C 0.104 3.896 5 O -0.317 6.317 6 C -0.264 4.264 7 C -0.222 4.222 8 S 0.324 5.676 9 C -0.386 4.386 10 C -0.090 4.090 11 C -0.156 4.156 12 C 0.130 3.870 13 C -0.495 4.495 14 H 0.103 0.897 15 C -0.170 4.170 16 N -0.418 5.418 17 Si 0.791 3.209 18 H -0.183 1.183 19 H -0.187 1.187 20 H -0.180 1.180 21 H 0.041 0.959 22 H 0.125 0.875 23 H 0.047 0.953 24 H 0.259 0.741 25 H 0.141 0.859 26 H 0.198 0.802 27 H 0.140 0.860 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.498 1.892 1.037 3.301 hybrid contribution -0.627 -1.290 -1.483 2.063 sum 1.872 0.603 -0.446 2.016 Atomic orbital electron populations 1.22839 0.81198 1.02512 0.98775 1.85900 1.19306 1.25234 1.94202 1.18735 1.11052 0.92982 0.91414 1.18234 0.96056 0.91277 0.84045 1.84638 1.46866 1.63516 1.36696 1.19831 1.12866 0.97866 0.95816 1.22548 1.04034 0.98802 0.96832 1.83141 1.63612 1.18046 1.02834 1.25127 1.12570 1.03081 0.97790 1.19776 0.96362 0.93532 0.99316 1.19374 1.05665 0.99118 0.91490 1.18834 0.87003 0.88419 0.92794 1.19433 1.37023 0.96457 0.96538 0.89731 1.26658 0.91702 0.93955 1.04733 1.69907 1.23796 1.11017 1.37067 0.85398 0.80239 0.79493 0.75730 1.18345 1.18719 1.18044 0.95898 0.87548 0.95250 0.74060 0.85852 0.80151 0.86011 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.70 11.13 113.37 1.26 2.97 15 2 O -0.33 -15.70 9.60 -76.84 -0.74 -16.44 15 3 C -0.09 -4.78 5.75 23.00 0.13 -4.64 15 4 C 0.15 6.98 6.67 22.37 0.15 7.13 15 5 O -0.51 -19.77 13.23 -79.26 -1.05 -20.82 15 6 C -0.24 -10.78 9.93 22.65 0.22 -10.55 15 7 C -0.11 -4.97 6.49 22.98 0.15 -4.83 15 8 S 0.06 2.40 23.30 -56.49 -1.32 1.08 15 9 C -0.25 -9.80 11.11 66.66 0.74 -9.06 15 10 C -0.06 -2.77 8.30 21.57 0.18 -2.59 15 11 C -0.15 -7.48 5.51 -19.93 -0.11 -7.59 15 12 C 0.13 7.13 5.49 -19.57 -0.11 7.03 15 13 C -0.47 -23.94 8.40 23.22 0.20 -23.75 15 14 H 0.08 4.33 7.92 -2.91 -0.02 4.31 15 15 C 0.05 2.29 3.84 85.25 0.33 2.62 15 16 N -0.79 -38.59 10.96 21.83 0.24 -38.36 15 17 Si 0.97 35.40 29.60 68.60 2.03 37.43 15 18 H -0.26 -9.30 7.11 99.48 0.71 -8.60 15 19 H -0.26 -8.99 7.11 99.48 0.71 -8.28 15 20 H -0.26 -9.18 7.11 99.48 0.71 -8.47 15 21 H 0.02 1.00 8.14 -2.39 -0.02 0.98 15 22 H 0.11 3.47 8.14 -2.39 -0.02 3.45 15 23 H 0.03 1.17 8.14 -2.39 -0.02 1.15 15 24 H 0.40 11.52 9.07 -74.06 -0.67 10.85 15 25 H 0.12 4.94 8.06 -2.91 -0.02 4.92 15 26 H 0.18 5.60 8.06 -2.91 -0.02 5.58 15 27 H 0.12 5.59 6.16 -2.91 -0.02 5.57 15 28 H 0.30 12.97 8.30 -92.71 -0.77 12.20 15 Total: -1.00 -59.54 262.62 2.84 -56.70 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.53 Total: 23.67 kcal Atomic # 6 Polarization: -46.41 SS G_CDS: 3.14 Total: -43.27 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.24 Total: -38.36 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -1.79 Total: -37.26 kcal Atomic # 14 Polarization: 35.40 SS G_CDS: 2.03 Total: 37.43 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.32 Total: 1.08 kcal Total: -59.54 2.84 -56.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396391648.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.060 kcal (2) G-P(sol) polarization free energy of solvation -59.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds