Wall clock time and date at job start Mon Mar 30 2020 05:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35569 * 117.00073 * 2 1 4 4 C 1.41225 * 120.07172 * 89.99868 * 3 2 1 5 5 C 1.45523 * 129.06100 * 359.97438 * 4 3 2 6 6 C 1.32417 * 114.73794 * 180.02562 * 5 4 3 7 7 O 1.35756 * 124.31801 * 180.02562 * 6 5 4 8 8 S 1.75262 * 111.36749 * 0.02562 * 6 5 4 9 9 C 1.39783 * 119.01599 * 180.02562 * 4 3 2 10 10 C 1.40609 * 120.21212 * 359.97438 * 9 4 3 11 11 C 1.35652 * 121.02977 * 359.97438 * 10 9 4 12 12 C 1.40631 * 120.08063 * 270.23660 * 3 2 1 13 13 C 1.41045 * 120.12728 * 0.02562 * 12 3 2 14 14 H 1.07994 * 120.00053 * 334.65213 * 13 12 3 15 15 C 1.39791 * 119.99914 * 154.66089 * 13 12 3 16 16 N 1.30985 * 119.99860 * 342.70179 * 15 13 12 17 17 Si 1.86797 * 119.99889 * 162.70197 * 15 13 12 18 18 H 1.48498 * 109.47393 * 60.00068 * 17 15 13 19 19 H 1.48505 * 109.47135 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47225 * 299.99692 * 17 15 13 21 21 H 1.08997 * 109.47365 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47464 * 300.00025 * 1 2 3 23 23 H 1.09002 * 109.46978 * 60.00221 * 1 2 3 24 24 H 1.08004 * 122.62899 * 0.02562 * 5 4 3 25 25 H 0.96709 * 114.00151 * 90.00137 * 7 6 5 26 26 H 1.08002 * 119.48526 * 179.97438 * 10 9 4 27 27 H 1.08008 * 119.92198 * 180.02562 * 11 10 9 28 28 H 0.97002 * 119.99633 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2079 0.0000 4 6 2.3658 1.8385 1.2222 5 6 2.1300 1.3768 2.5819 6 6 2.5502 2.2024 3.5281 7 8 2.4295 1.9657 4.8594 8 16 3.2820 3.6398 2.8425 9 6 2.9998 3.0840 1.1964 10 6 3.3108 3.6943 -0.0315 11 6 3.0056 3.0929 -1.2085 12 6 2.3601 1.8382 -1.2169 13 6 2.0369 1.2164 -2.4409 14 1 1.9382 0.1421 -2.4913 15 6 1.8445 1.9906 -3.5889 16 7 1.6267 3.2777 -3.4818 17 14 1.8982 1.1895 -5.2755 18 1 0.8420 0.1492 -5.3632 19 1 1.6661 2.2191 -6.3202 20 1 3.2283 0.5632 -5.4840 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6499 0.4348 2.8021 25 1 3.1819 1.4963 5.2453 26 1 3.8004 4.6570 -0.0377 27 1 3.2531 3.5777 -2.1414 28 1 1.4928 3.8149 -4.2783 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396391928.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:25 Heat of formation + Delta-G solvation = -44.725440 kcal Electronic energy + Delta-G solvation = -15703.440685 eV Core-core repulsion = 13004.159255 eV Total energy + Delta-G solvation = -2699.281430 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.82163 -37.65033 -36.04104 -34.55383 -32.51223 -29.51303 -27.72491 -26.03604 -25.12932 -22.47513 -20.97710 -20.14941 -18.17271 -17.34965 -16.59813 -15.51699 -15.36037 -15.00699 -14.44326 -14.13664 -13.91285 -13.78722 -12.72057 -12.58248 -12.10178 -12.01268 -11.60649 -11.31119 -11.22538 -10.92544 -10.67824 -10.37164 -9.92436 -9.87599 -9.67641 -9.28565 -8.75076 -8.33644 -7.42423 -7.09091 -6.76500 -4.52563 1.58667 2.18098 2.42629 2.86314 2.96280 2.97707 3.03031 3.22629 3.77695 4.28889 4.58639 4.91639 5.48070 5.85835 6.02897 6.11873 6.18752 6.31379 6.38082 6.43245 6.66360 6.85987 6.98683 7.07426 7.26968 7.45563 7.66532 7.71899 7.92475 8.19404 8.48236 8.61134 8.97255 9.92525 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.034959 B = 0.007118 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.749748 B = 3932.640880 C = 4583.233800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.321 6.321 3 C -0.021 4.021 4 C -0.045 4.045 5 C -0.128 4.128 6 C 0.008 3.992 7 O -0.462 6.462 8 S -0.001 6.001 9 C -0.209 4.209 10 C -0.081 4.081 11 C -0.111 4.111 12 C 0.104 3.896 13 C -0.435 4.435 14 H 0.089 0.911 15 C 0.073 3.927 16 N -0.786 5.786 17 Si 0.915 3.085 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.260 1.260 21 H 0.071 0.929 22 H 0.027 0.973 23 H 0.044 0.956 24 H 0.136 0.864 25 H 0.382 0.618 26 H 0.099 0.901 27 H 0.132 0.868 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.171 -1.454 4.346 4.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.238 6.238 3 C -0.069 4.069 4 C -0.051 4.051 5 C -0.162 4.162 6 C -0.150 4.150 7 O -0.271 6.271 8 S 0.257 5.743 9 C -0.324 4.324 10 C -0.103 4.103 11 C -0.132 4.132 12 C 0.100 3.900 13 C -0.463 4.463 14 H 0.107 0.893 15 C -0.146 4.146 16 N -0.411 5.411 17 Si 0.739 3.261 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.185 1.185 21 H 0.089 0.911 22 H 0.045 0.955 23 H 0.062 0.938 24 H 0.153 0.847 25 H 0.236 0.764 26 H 0.117 0.883 27 H 0.149 0.851 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.281 0.137 4.823 4.992 hybrid contribution -0.498 -1.479 -1.148 1.938 sum 0.782 -1.342 3.674 3.989 Atomic orbital electron populations 1.22805 0.82920 1.00590 0.99811 1.85927 1.17593 1.26145 1.94098 1.18239 1.07963 0.91024 0.89671 1.18769 1.01053 0.93581 0.91666 1.21393 1.03022 1.00240 0.91540 1.21806 1.08841 0.98510 0.85870 1.84833 1.45960 1.78630 1.17627 1.83554 1.66666 1.24314 0.99780 1.21616 1.16737 0.99535 0.94506 1.19844 1.01583 0.98616 0.90252 1.21006 0.98796 0.96903 0.96491 1.17667 0.89565 0.91013 0.91765 1.19522 1.39424 0.95696 0.91674 0.89262 1.26043 0.91951 0.94652 1.02002 1.69854 1.31888 1.06783 1.32550 0.86226 0.80333 0.79774 0.79736 1.18737 1.20172 1.18486 0.91063 0.95453 0.93757 0.84659 0.76356 0.88273 0.85067 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.13 101.05 1.12 1.79 15 2 O -0.32 -7.51 9.57 -18.40 -0.18 -7.68 15 3 C -0.02 -0.52 5.82 -37.55 -0.22 -0.74 15 4 C -0.04 -1.05 6.03 -105.28 -0.63 -1.68 15 5 C -0.13 -2.63 10.29 -38.60 -0.40 -3.03 15 6 C 0.01 0.16 7.46 28.81 0.21 0.37 15 7 O -0.46 -7.26 13.64 -18.98 -0.26 -7.52 15 8 S 0.00 -0.02 23.23 -107.50 -2.50 -2.51 15 9 C -0.21 -4.76 6.50 -38.11 -0.25 -5.01 15 10 C -0.08 -1.83 9.98 -39.61 -0.40 -2.23 15 11 C -0.11 -2.71 8.59 -39.42 -0.34 -3.05 15 12 C 0.10 2.67 5.56 -106.84 -0.59 2.07 15 13 C -0.43 -10.91 8.68 -37.94 -0.33 -11.23 15 14 H 0.09 2.23 7.63 -52.49 -0.40 1.83 15 15 C 0.07 1.70 5.13 -17.33 -0.09 1.61 15 16 N -0.79 -18.78 10.98 55.54 0.61 -18.17 15 17 Si 0.92 17.56 29.59 -169.99 -5.03 12.52 15 18 H -0.26 -5.02 7.11 56.52 0.40 -4.62 15 19 H -0.28 -5.15 7.11 56.52 0.40 -4.75 15 20 H -0.26 -4.98 7.11 56.52 0.40 -4.58 15 21 H 0.07 1.16 8.14 -51.93 -0.42 0.73 15 22 H 0.03 0.51 8.14 -51.93 -0.42 0.09 15 23 H 0.04 0.91 8.14 -51.93 -0.42 0.49 15 24 H 0.14 2.57 8.06 -52.48 -0.42 2.15 15 25 H 0.38 3.94 9.06 45.56 0.41 4.35 15 26 H 0.10 2.00 8.06 -52.49 -0.42 1.58 15 27 H 0.13 3.20 6.20 -52.48 -0.33 2.87 15 28 H 0.29 6.21 8.30 -40.82 -0.34 5.87 15 LS Contribution 265.23 15.07 4.00 4.00 Total: -1.00 -27.65 265.23 -6.82 -34.47 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -1.56 Total: 6.01 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -1.91 Total: -21.12 kcal Atomic # 7 Polarization: -18.78 SS G_CDS: 0.61 Total: -18.17 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.43 Total: -15.20 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.52 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.50 Total: -2.51 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.65 -6.82 -34.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396391928.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.251 kcal (2) G-P(sol) polarization free energy of solvation -27.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds