Wall clock time and date at job start Mon Mar 30 2020 05:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35569 * 117.00073 * 2 1 4 4 C 1.41225 * 120.07172 * 89.99868 * 3 2 1 5 5 C 1.45523 * 129.06100 * 359.97438 * 4 3 2 6 6 C 1.32417 * 114.73794 * 180.02562 * 5 4 3 7 7 O 1.35756 * 124.31801 * 180.02562 * 6 5 4 8 8 S 1.75262 * 111.36749 * 0.02562 * 6 5 4 9 9 C 1.39783 * 119.01599 * 180.02562 * 4 3 2 10 10 C 1.40609 * 120.21212 * 359.97438 * 9 4 3 11 11 C 1.35652 * 121.02977 * 359.97438 * 10 9 4 12 12 C 1.40631 * 120.08063 * 270.23660 * 3 2 1 13 13 C 1.41045 * 120.12728 * 0.02562 * 12 3 2 14 14 H 1.07994 * 120.00053 * 334.65213 * 13 12 3 15 15 C 1.39791 * 119.99914 * 154.66089 * 13 12 3 16 16 N 1.30985 * 119.99860 * 342.70179 * 15 13 12 17 17 Si 1.86797 * 119.99889 * 162.70197 * 15 13 12 18 18 H 1.48498 * 109.47393 * 60.00068 * 17 15 13 19 19 H 1.48505 * 109.47135 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47225 * 299.99692 * 17 15 13 21 21 H 1.08997 * 109.47365 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47464 * 300.00025 * 1 2 3 23 23 H 1.09002 * 109.46978 * 60.00221 * 1 2 3 24 24 H 1.08004 * 122.62899 * 0.02562 * 5 4 3 25 25 H 0.96709 * 114.00151 * 90.00137 * 7 6 5 26 26 H 1.08002 * 119.48526 * 179.97438 * 10 9 4 27 27 H 1.08008 * 119.92198 * 180.02562 * 11 10 9 28 28 H 0.97002 * 119.99633 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2079 0.0000 4 6 2.3658 1.8385 1.2222 5 6 2.1300 1.3768 2.5819 6 6 2.5502 2.2024 3.5281 7 8 2.4295 1.9657 4.8594 8 16 3.2820 3.6398 2.8425 9 6 2.9998 3.0840 1.1964 10 6 3.3108 3.6943 -0.0315 11 6 3.0056 3.0929 -1.2085 12 6 2.3601 1.8382 -1.2169 13 6 2.0369 1.2164 -2.4409 14 1 1.9382 0.1421 -2.4913 15 6 1.8445 1.9906 -3.5889 16 7 1.6267 3.2777 -3.4818 17 14 1.8982 1.1895 -5.2755 18 1 0.8420 0.1492 -5.3632 19 1 1.6661 2.2191 -6.3202 20 1 3.2283 0.5632 -5.4840 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6499 0.4348 2.8021 25 1 3.1819 1.4963 5.2453 26 1 3.8004 4.6570 -0.0377 27 1 3.2531 3.5777 -2.1414 28 1 1.4928 3.8149 -4.2783 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396391928.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:25 Heat of formation + Delta-G solvation = -62.253402 kcal Electronic energy + Delta-G solvation = -15704.200754 eV Core-core repulsion = 13004.159255 eV Total energy + Delta-G solvation = -2700.041499 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.53195 -39.08836 -37.76549 -36.26151 -34.20065 -31.29821 -29.40912 -27.72158 -26.87326 -24.13183 -22.70578 -21.81129 -19.71677 -19.08299 -18.26411 -17.20100 -16.92287 -16.67913 -16.12985 -15.67667 -15.55334 -15.40180 -14.39398 -14.27252 -13.76771 -13.62612 -13.24961 -12.98085 -12.82273 -12.58404 -12.24423 -12.01081 -11.60650 -11.55738 -11.23494 -11.00353 -10.49387 -10.03824 -9.15512 -8.82800 -8.44914 -6.37193 -0.03627 0.61421 0.65166 1.19493 1.38257 1.43381 1.50889 1.57512 2.17939 2.53113 3.17116 3.22136 3.68660 4.23658 4.38988 4.53103 4.65808 4.70400 4.75115 4.82706 4.93441 5.10193 5.27210 5.30954 5.52335 5.67249 5.86642 6.11974 6.35105 6.55779 6.65151 6.78791 7.18768 8.20370 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.034959 B = 0.007118 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.749748 B = 3932.640880 C = 4583.233800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.336 6.336 3 C -0.043 4.043 4 C -0.057 4.057 5 C -0.155 4.155 6 C 0.035 3.965 7 O -0.458 6.458 8 S 0.043 5.957 9 C -0.235 4.235 10 C -0.081 4.081 11 C -0.132 4.132 12 C 0.076 3.924 13 C -0.464 4.464 14 H 0.079 0.921 15 C 0.040 3.960 16 N -0.813 5.813 17 Si 0.984 3.016 18 H -0.261 1.261 19 H -0.264 1.264 20 H -0.259 1.259 21 H 0.107 0.893 22 H 0.032 0.968 23 H 0.025 0.975 24 H 0.147 0.853 25 H 0.413 0.587 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.253 -1.537 5.416 5.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.252 6.252 3 C -0.091 4.091 4 C -0.064 4.064 5 C -0.188 4.188 6 C -0.125 4.125 7 O -0.271 6.271 8 S 0.301 5.699 9 C -0.349 4.349 10 C -0.103 4.103 11 C -0.153 4.153 12 C 0.072 3.928 13 C -0.493 4.493 14 H 0.097 0.903 15 C -0.178 4.178 16 N -0.437 5.437 17 Si 0.804 3.196 18 H -0.185 1.185 19 H -0.188 1.188 20 H -0.184 1.184 21 H 0.125 0.875 22 H 0.051 0.949 23 H 0.044 0.956 24 H 0.165 0.835 25 H 0.272 0.728 26 H 0.139 0.861 27 H 0.141 0.859 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.378 0.052 5.927 6.085 hybrid contribution -0.521 -1.426 -1.237 1.959 sum 0.857 -1.374 4.689 4.961 Atomic orbital electron populations 1.22932 0.81121 1.02757 0.99131 1.85852 1.19329 1.25890 1.94158 1.18474 1.08864 0.91510 0.90215 1.19071 1.00788 0.93891 0.92625 1.21381 1.05317 1.01582 0.90503 1.21810 1.06145 0.97549 0.86949 1.84764 1.47751 1.78979 1.15563 1.83354 1.65959 1.23889 0.96708 1.21982 1.16573 0.99839 0.96538 1.20073 1.00913 0.99245 0.90032 1.20977 1.00192 0.97134 0.96957 1.18020 0.90280 0.91900 0.92578 1.19615 1.41411 0.95405 0.92825 0.90302 1.26789 0.90898 0.95017 1.05048 1.69881 1.32006 1.07891 1.33957 0.85208 0.80170 0.78967 0.75234 1.18493 1.18789 1.18366 0.87453 0.94923 0.95579 0.83544 0.72833 0.86076 0.85861 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.39 11.13 113.37 1.26 2.65 15 2 O -0.34 -15.97 9.57 -88.76 -0.85 -16.82 15 3 C -0.04 -2.18 5.82 23.59 0.14 -2.04 15 4 C -0.06 -2.68 6.03 -20.29 -0.12 -2.81 15 5 C -0.15 -6.12 10.29 23.04 0.24 -5.88 15 6 C 0.03 1.22 7.46 66.71 0.50 1.72 15 7 O -0.46 -12.51 13.64 -90.82 -1.24 -13.75 15 8 S 0.04 1.56 23.23 -56.49 -1.31 0.25 15 9 C -0.23 -10.55 6.50 23.22 0.15 -10.40 15 10 C -0.08 -3.69 9.98 22.25 0.22 -3.47 15 11 C -0.13 -6.64 8.59 22.37 0.19 -6.45 15 12 C 0.08 4.06 5.56 -21.30 -0.12 3.94 15 13 C -0.46 -24.17 8.68 23.33 0.20 -23.97 15 14 H 0.08 4.11 7.63 -2.91 -0.02 4.09 15 15 C 0.04 1.88 5.13 85.19 0.44 2.31 15 16 N -0.81 -39.62 10.98 21.81 0.24 -39.38 15 17 Si 0.98 36.18 29.59 68.60 2.03 38.21 15 18 H -0.26 -9.41 7.11 99.48 0.71 -8.70 15 19 H -0.26 -9.05 7.11 99.48 0.71 -8.34 15 20 H -0.26 -9.42 7.11 99.48 0.71 -8.71 15 21 H 0.11 3.36 8.14 -2.39 -0.02 3.34 15 22 H 0.03 1.22 8.14 -2.39 -0.02 1.20 15 23 H 0.03 1.09 8.14 -2.39 -0.02 1.07 15 24 H 0.15 5.35 8.06 -2.91 -0.02 5.32 15 25 H 0.41 6.57 9.06 -74.05 -0.67 5.90 15 26 H 0.12 4.84 8.06 -2.91 -0.02 4.81 15 27 H 0.12 6.26 6.20 -2.91 -0.02 6.24 15 28 H 0.29 12.89 8.30 -92.71 -0.77 12.12 15 Total: -1.00 -60.03 265.23 2.50 -57.53 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.53 Total: 18.36 kcal Atomic # 6 Polarization: -47.49 SS G_CDS: 3.10 Total: -44.39 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.24 Total: -39.38 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -2.09 Total: -30.57 kcal Atomic # 14 Polarization: 36.18 SS G_CDS: 2.03 Total: 38.21 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -1.31 Total: 0.25 kcal Total: -60.03 2.50 -57.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396391928.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.722 kcal (2) G-P(sol) polarization free energy of solvation -60.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds