Wall clock time and date at job start Mon Mar 30 2020 05:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.50698 * 109.47342 * 119.99730 * 2 1 3 5 5 H 1.08005 * 119.99819 * 119.99676 * 4 2 1 6 6 C 1.37875 * 120.00046 * 300.00335 * 4 2 1 7 7 N 1.31512 * 119.99933 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99912 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47123 * 90.00333 * 8 6 4 10 10 H 1.48506 * 109.46940 * 210.00455 * 8 6 4 11 11 H 1.48497 * 109.47329 * 330.00167 * 8 6 4 12 12 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 13 13 N 1.30966 * 126.42705 * 120.00358 * 12 2 1 14 14 C 1.35261 * 105.57976 * 179.97438 * 13 12 2 15 15 C 1.48235 * 126.42872 * 179.97438 * 14 13 12 16 16 C 1.39591 * 122.84821 * 179.97438 * 15 14 13 17 17 C 1.33164 * 113.73515 * 180.02562 * 16 15 14 18 18 S 1.75735 * 109.74486 * 359.97438 * 17 16 15 19 19 C 1.34462 * 122.84684 * 359.71119 * 15 14 13 20 20 N 1.30876 * 107.14790 * 359.97438 * 14 13 12 21 21 O 1.21294 * 110.07497 * 359.73145 * 20 14 13 22 22 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 23 23 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 24 24 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 25 25 H 0.97006 * 119.99727 * 179.97438 * 7 6 4 26 26 H 1.08003 * 123.13688 * 359.96475 * 16 15 14 27 27 H 1.08003 * 125.12484 * 179.97438 * 17 16 15 28 28 H 1.08005 * 124.73611 * 359.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5565 8 14 0.6258 1.2798 2.6540 9 1 -0.8021 0.8745 2.6993 10 1 0.9772 1.9955 3.9070 11 1 0.8490 2.1773 1.4922 12 6 2.0323 -0.7104 -1.2305 13 7 2.7883 -0.1989 -2.1696 14 6 2.9832 -1.1961 -3.0625 15 6 3.7765 -1.1161 -4.3122 16 6 3.9289 -2.1966 -5.1827 17 6 4.6784 -1.9241 -6.2492 18 16 5.2240 -0.2550 -6.1806 19 6 4.4060 0.0050 -4.7060 20 7 2.3401 -2.2449 -2.6162 21 8 1.7953 -1.9828 -1.5646 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.9032 -0.5278 4.4375 26 1 3.4815 -3.1638 -5.0072 27 1 4.9153 -2.6235 -7.0373 28 1 4.3967 0.9389 -4.1636 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594728049.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:55 Heat of formation + Delta-G solvation = 79.912332 kcal Electronic energy + Delta-G solvation = -15332.997671 eV Core-core repulsion = 12671.413692 eV Total energy + Delta-G solvation = -2661.583979 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -46.45520 -39.30913 -37.22045 -36.18850 -34.03508 -32.10666 -30.71635 -27.28611 -26.61193 -25.38660 -23.87879 -22.48453 -20.16370 -19.24899 -18.76513 -18.54863 -18.20800 -16.96360 -16.47224 -15.80799 -15.03304 -14.55923 -14.46610 -14.19301 -13.92417 -13.82074 -13.53296 -13.32164 -13.17927 -12.71027 -12.66233 -12.21521 -12.00244 -11.95422 -11.58118 -11.45839 -11.03356 -10.78447 -9.93552 -9.31545 -8.36904 -6.49233 -0.36019 0.26316 0.58846 0.88926 0.94158 1.36428 1.42632 1.52906 1.93903 2.00002 2.30022 2.60843 2.97361 3.11284 3.91883 4.01215 4.33274 4.40723 4.47117 4.48774 4.57155 4.77944 4.84271 4.92890 5.00795 5.16804 5.30096 5.35051 5.39697 6.08586 6.53469 7.13191 7.16167 8.79351 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.046772 B = 0.004912 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.509728 B = 5698.847648 C = 5850.258232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.097 3.903 3 H 0.082 0.918 4 C -0.538 4.538 5 H 0.031 0.969 6 C 0.027 3.973 7 N -0.937 5.937 8 Si 0.950 3.050 9 H -0.252 1.252 10 H -0.294 1.294 11 H -0.236 1.236 12 C 0.241 3.759 13 N -0.512 5.512 14 C 0.221 3.779 15 C -0.071 4.071 16 C -0.132 4.132 17 C -0.218 4.218 18 S 0.267 5.733 19 C -0.219 4.219 20 N -0.409 5.409 21 O 0.060 5.940 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.273 0.727 26 H 0.143 0.857 27 H 0.206 0.794 28 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.367 3.494 -19.526 19.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.076 3.924 3 H 0.100 0.900 4 C -0.576 4.576 5 H 0.049 0.951 6 C -0.173 4.173 7 N -0.575 5.575 8 Si 0.774 3.226 9 H -0.178 1.178 10 H -0.221 1.221 11 H -0.159 1.159 12 C 0.022 3.978 13 N -0.246 5.246 14 C -0.051 4.051 15 C -0.087 4.087 16 C -0.161 4.161 17 C -0.353 4.353 18 S 0.532 5.468 19 C -0.360 4.360 20 N -0.123 5.123 21 O 0.007 5.993 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.161 0.839 27 H 0.223 0.777 28 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.467 3.909 -20.868 21.512 hybrid contribution -1.264 -0.742 2.155 2.606 sum 2.203 3.167 -18.713 19.107 Atomic orbital electron populations 1.22144 0.93767 1.02971 1.01685 1.18086 0.95007 0.95533 0.83739 0.90015 1.20778 1.33577 1.13387 0.89879 0.95093 1.25811 0.96717 1.00248 0.94494 1.70009 1.46281 1.42214 0.98957 0.85837 0.79345 0.79060 0.78345 1.17767 1.22101 1.15936 1.29268 0.90764 0.81284 0.96506 1.72015 1.18718 1.29890 1.03979 1.24042 0.98459 0.85312 0.97250 1.16670 1.03284 0.96332 0.92421 1.20136 1.02167 0.99304 0.94531 1.26040 1.04474 1.01348 1.03476 1.82735 1.45702 1.05118 1.13253 1.25409 1.03614 1.02668 1.04276 1.74826 1.14948 1.23759 0.98719 1.85229 1.55131 1.30126 1.28782 0.92154 0.90981 0.91717 0.91733 0.83901 0.77709 0.81056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.70 8.66 71.98 0.62 -5.08 15 2 C 0.10 4.43 2.36 -12.29 -0.03 4.40 15 3 H 0.08 3.61 7.20 -2.39 -0.02 3.60 15 4 C -0.54 -30.00 9.13 25.60 0.23 -29.77 15 5 H 0.03 1.97 7.98 -2.91 -0.02 1.95 15 6 C 0.03 1.49 5.45 84.65 0.46 1.95 15 7 N -0.94 -56.37 13.96 21.45 0.30 -56.07 15 8 Si 0.95 40.72 24.37 68.60 1.67 42.39 15 9 H -0.25 -10.00 6.87 99.48 0.68 -9.31 15 10 H -0.29 -12.66 7.11 99.48 0.71 -11.95 15 11 H -0.24 -9.08 6.53 99.48 0.65 -8.43 15 12 C 0.24 10.96 6.94 88.36 0.61 11.57 15 13 N -0.51 -22.27 11.48 -302.33 -3.47 -25.74 15 14 C 0.22 9.01 7.88 137.19 1.08 10.09 15 15 C -0.07 -2.26 5.80 -21.16 -0.12 -2.39 15 16 C -0.13 -3.40 10.03 21.45 0.22 -3.19 15 17 C -0.22 -3.80 11.20 66.68 0.75 -3.06 15 18 S 0.27 4.36 23.09 -56.49 -1.30 3.05 15 19 C -0.22 -5.70 10.67 66.96 0.71 -4.98 15 20 N -0.41 -17.68 12.11 -58.94 -0.71 -18.39 15 21 O 0.06 2.76 11.29 74.62 0.84 3.61 15 22 H 0.06 2.29 3.27 -2.39 -0.01 2.28 15 23 H 0.07 2.31 8.14 -2.39 -0.02 2.29 15 24 H 0.06 2.49 8.14 -2.39 -0.02 2.47 15 25 H 0.27 15.22 8.31 -92.70 -0.77 14.45 15 26 H 0.14 3.73 8.06 -2.91 -0.02 3.70 15 27 H 0.21 2.00 8.06 -2.91 -0.02 1.98 15 28 H 0.17 4.46 8.06 -2.91 -0.02 4.44 15 Total: -1.00 -67.12 262.13 2.98 -64.15 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 1.11 Total: 7.45 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 4.54 Total: -20.45 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -3.88 Total: -100.21 kcal Atomic # 8 Polarization: 2.76 SS G_CDS: 0.84 Total: 3.61 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.67 Total: 42.39 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.30 Total: 3.05 kcal Total: -67.12 2.98 -64.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594728049.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.058 kcal (2) G-P(sol) polarization free energy of solvation -67.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds