Wall clock time and date at job start Mon Mar 30 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00226 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00212 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00276 * 8 6 4 12 12 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 13 13 O 1.21279 * 120.00072 * 119.99863 * 12 2 1 14 14 N 1.34777 * 119.99762 * 300.00068 * 12 2 1 15 15 C 1.38795 * 120.00089 * 180.02562 * 14 12 2 16 16 S 1.70440 * 124.64644 * 0.02562 * 15 14 12 17 17 C 1.75471 * 92.52311 * 179.97438 * 16 15 14 18 18 C 1.32617 * 110.77696 * 359.97438 * 17 16 15 19 19 C 1.36988 * 124.64643 * 179.71862 * 15 14 12 20 20 C 1.43198 * 123.58304 * 0.02562 * 19 15 14 21 21 N 5.78084 * 79.42729 * 74.39981 * 2 1 3 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 26 26 H 0.96999 * 120.00047 * 359.97438 * 14 12 2 27 27 H 1.08004 * 124.61041 * 179.97438 * 17 16 15 28 28 H 1.07999 * 123.42289 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 6 2.0324 -0.7105 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1698 -0.9040 3.5879 16 16 3.1549 -2.2947 3.5695 17 6 3.2110 -2.3728 5.3216 18 6 2.5109 -1.3831 5.8592 19 6 1.9027 -0.5165 4.8744 20 6 1.1032 0.6236 5.2085 21 7 0.4693 1.5282 5.4734 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7089 1.1613 -3.4844 26 1 1.1494 0.5389 2.5436 27 1 3.7433 -3.1246 5.8854 28 1 2.4085 -1.2370 6.9244 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598801090.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:57 Heat of formation + Delta-G solvation = 16.116502 kcal Electronic energy + Delta-G solvation = -15273.485459 eV Core-core repulsion = 12609.135084 eV Total energy + Delta-G solvation = -2664.350374 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.94033 -37.91717 -35.75678 -34.33450 -34.06214 -30.85013 -28.68748 -25.34925 -24.90845 -22.91057 -21.22192 -20.07578 -18.71079 -17.10809 -16.37146 -15.65949 -15.18562 -15.03622 -14.59629 -14.25537 -13.85632 -13.43338 -13.07304 -12.83978 -12.58092 -12.34763 -11.85615 -11.80221 -11.26699 -10.98958 -10.85595 -10.70813 -10.65353 -10.45733 -10.12579 -9.20681 -9.07499 -8.54223 -8.31978 -7.95772 -6.19841 -4.25524 0.89864 1.39505 2.05754 2.12938 2.82893 3.11111 3.21245 3.25263 3.31863 3.38982 3.63529 4.24621 4.33711 5.06675 5.13899 5.21864 5.61976 5.79064 6.01122 6.23112 6.37408 6.42951 6.57808 6.65814 7.16469 7.36680 7.60418 7.66179 7.84462 8.03606 8.47229 8.82946 9.41195 10.87681 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.033313 B = 0.006053 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.315343 B = 4624.588065 C = 5376.792472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.036 3.964 3 H 0.062 0.938 4 C -0.510 4.510 5 H 0.078 0.922 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.271 1.271 12 C 0.513 3.487 13 O -0.496 6.496 14 N -0.643 5.643 15 C 0.086 3.914 16 S 0.317 5.683 17 C -0.302 4.302 18 C -0.068 4.068 19 C -0.157 4.157 20 C 0.284 3.716 21 N -0.440 5.440 22 H 0.100 0.900 23 H 0.013 0.987 24 H 0.036 0.964 25 H 0.264 0.736 26 H 0.417 0.583 27 H 0.166 0.834 28 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.002 -4.808 12.013 13.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.015 3.985 3 H 0.080 0.920 4 C -0.548 4.548 5 H 0.096 0.904 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.196 1.196 12 C 0.304 3.696 13 O -0.369 6.369 14 N -0.286 5.286 15 C -0.138 4.138 16 S 0.577 5.423 17 C -0.437 4.437 18 C -0.099 4.099 19 C -0.178 4.178 20 C -0.031 4.031 21 N -0.118 5.118 22 H 0.118 0.882 23 H 0.032 0.968 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.255 0.745 27 H 0.184 0.816 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.052 -4.854 10.940 12.352 hybrid contribution -0.524 0.704 0.418 0.972 sum 2.529 -4.150 11.359 12.354 Atomic orbital electron populations 1.21823 0.95825 1.00384 1.01524 1.18958 0.94570 0.97112 0.87813 0.92010 1.21054 1.31941 1.13231 0.88585 0.90401 1.24952 0.94839 0.94945 0.99279 1.69857 1.36505 1.22763 1.24001 0.86377 0.79496 0.79223 0.81726 1.20513 1.21183 1.19584 1.22873 0.78215 0.84520 0.83968 1.90467 1.36319 1.25869 1.84294 1.43828 1.50681 1.30611 1.03472 1.22359 1.00962 1.00885 0.89545 1.84530 1.42673 1.17517 0.97559 1.25965 1.09841 1.05728 1.02182 1.20522 0.97110 0.93348 0.98882 1.15950 1.12036 0.99143 0.90679 1.24960 0.92326 0.92064 0.93798 1.81245 1.11669 1.11570 1.07312 0.88157 0.96813 0.94457 0.92629 0.74515 0.81605 0.83875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.87 37.16 0.33 -2.63 15 2 C 0.04 0.83 2.64 -92.92 -0.25 0.59 15 3 H 0.06 1.46 8.14 -51.93 -0.42 1.04 15 4 C -0.51 -13.33 8.37 -34.44 -0.29 -13.62 15 5 H 0.08 2.11 6.75 -52.48 -0.35 1.76 15 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 15 7 N -0.89 -23.81 11.32 55.43 0.63 -23.18 15 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 15 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 15 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 12 C 0.51 10.43 7.11 -10.98 -0.08 10.36 15 13 O -0.50 -10.85 12.89 5.56 0.07 -10.77 15 14 N -0.64 -10.79 5.26 -11.61 -0.06 -10.85 15 15 C 0.09 1.31 6.98 -14.85 -0.10 1.21 15 16 S 0.32 4.34 19.96 -107.50 -2.15 2.19 15 17 C -0.30 -3.15 11.10 28.83 0.32 -2.83 15 18 C -0.07 -0.76 10.35 -38.98 -0.40 -1.16 15 19 C -0.16 -2.16 5.88 -105.92 -0.62 -2.78 15 20 C 0.28 4.23 14.98 -22.48 -0.34 3.90 15 21 N -0.44 -7.26 18.54 41.84 0.78 -6.49 15 22 H 0.10 2.40 6.07 -51.93 -0.32 2.08 15 23 H 0.01 0.24 7.56 -51.93 -0.39 -0.15 15 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 15 25 H 0.26 6.75 8.31 -40.82 -0.34 6.41 15 26 H 0.42 6.45 7.57 -40.82 -0.31 6.14 15 27 H 0.17 1.25 8.06 -52.48 -0.42 0.83 15 28 H 0.14 1.24 8.06 -52.49 -0.42 0.81 15 LS Contribution 269.07 15.07 4.05 4.05 Total: -1.00 -27.97 269.07 -5.42 -33.38 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -2.20 Total: 1.50 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -1.52 Total: -5.45 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 1.34 Total: -40.53 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.07 Total: -10.77 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -2.15 Total: 2.19 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.97 -5.42 -33.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598801090.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.501 kcal (2) G-P(sol) polarization free energy of solvation -27.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds