Wall clock time and date at job start Mon Mar 30 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00226 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00212 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00276 * 8 6 4 12 12 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 13 13 O 1.21279 * 120.00072 * 119.99863 * 12 2 1 14 14 N 1.34777 * 119.99762 * 300.00068 * 12 2 1 15 15 C 1.38795 * 120.00089 * 180.02562 * 14 12 2 16 16 S 1.70440 * 124.64644 * 0.02562 * 15 14 12 17 17 C 1.75471 * 92.52311 * 179.97438 * 16 15 14 18 18 C 1.32617 * 110.77696 * 359.97438 * 17 16 15 19 19 C 1.36988 * 124.64643 * 179.71862 * 15 14 12 20 20 C 1.43198 * 123.58304 * 0.02562 * 19 15 14 21 21 N 5.78084 * 79.42729 * 74.39981 * 2 1 3 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 26 26 H 0.96999 * 120.00047 * 359.97438 * 14 12 2 27 27 H 1.08004 * 124.61041 * 179.97438 * 17 16 15 28 28 H 1.07999 * 123.42289 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 6 2.0324 -0.7105 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1698 -0.9040 3.5879 16 16 3.1549 -2.2947 3.5695 17 6 3.2110 -2.3728 5.3216 18 6 2.5109 -1.3831 5.8592 19 6 1.9027 -0.5165 4.8744 20 6 1.1032 0.6236 5.2085 21 7 0.4693 1.5282 5.4734 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7089 1.1613 -3.4844 26 1 1.1494 0.5389 2.5436 27 1 3.7433 -3.1246 5.8854 28 1 2.4085 -1.2370 6.9244 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598801090.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:57 Heat of formation + Delta-G solvation = -0.628945 kcal Electronic energy + Delta-G solvation = -15274.211596 eV Core-core repulsion = 12609.135084 eV Total energy + Delta-G solvation = -2665.076511 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.39740 -39.11275 -36.97925 -35.93058 -35.63647 -32.67892 -29.85015 -27.27532 -26.15593 -24.47496 -22.38391 -21.45056 -19.96800 -18.56895 -18.20068 -17.07789 -16.64911 -16.52901 -16.03454 -15.31351 -15.15217 -14.96995 -14.58649 -14.24328 -13.79383 -13.70291 -13.41599 -13.08116 -12.90494 -12.76991 -12.64249 -12.32868 -12.09172 -11.87793 -11.73903 -11.12145 -10.66780 -10.44203 -9.37815 -9.10161 -8.18513 -6.30033 -0.26223 0.32243 1.12166 1.12572 1.43233 1.44927 1.55298 1.58644 1.66292 1.89630 2.44454 2.47278 3.09708 3.12892 4.00597 4.04701 4.36386 4.63343 4.80212 4.85354 4.87730 5.01856 5.25097 5.36522 5.38583 5.67706 5.79052 6.01758 6.22012 6.47135 6.78120 6.94076 7.39267 8.87633 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.033313 B = 0.006053 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.315343 B = 4624.588065 C = 5376.792472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.030 3.970 3 H 0.049 0.951 4 C -0.528 4.528 5 H 0.062 0.938 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.519 3.481 13 O -0.519 6.519 14 N -0.636 5.636 15 C 0.054 3.946 16 S 0.288 5.712 17 C -0.266 4.266 18 C -0.073 4.073 19 C -0.142 4.142 20 C 0.297 3.703 21 N -0.468 5.468 22 H 0.076 0.924 23 H 0.043 0.957 24 H 0.032 0.968 25 H 0.265 0.735 26 H 0.422 0.578 27 H 0.205 0.795 28 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.494 -5.729 13.836 15.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.009 3.991 3 H 0.067 0.933 4 C -0.566 4.566 5 H 0.080 0.920 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.784 3.216 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.310 3.690 13 O -0.394 6.394 14 N -0.279 5.279 15 C -0.168 4.168 16 S 0.549 5.451 17 C -0.401 4.401 18 C -0.101 4.101 19 C -0.164 4.164 20 C -0.018 4.018 21 N -0.146 5.146 22 H 0.094 0.906 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.260 0.740 27 H 0.222 0.778 28 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.542 -5.774 12.799 14.481 hybrid contribution -0.647 0.973 0.014 1.169 sum 2.895 -4.801 12.813 13.986 Atomic orbital electron populations 1.21637 0.94921 1.00071 1.01778 1.18834 0.95351 0.96325 0.88553 0.93333 1.21246 1.32011 1.13078 0.90306 0.92002 1.25612 0.95057 0.95617 1.01628 1.69952 1.37093 1.23562 1.24508 0.85537 0.78845 0.78362 0.78839 1.20038 1.20556 1.19757 1.22127 0.78248 0.84163 0.84506 1.90463 1.37244 1.26600 1.85131 1.43323 1.50735 1.30744 1.03132 1.22505 1.02969 1.02101 0.89214 1.84648 1.42396 1.17106 1.00934 1.26249 1.08503 1.05755 0.99610 1.20840 0.96724 0.92663 0.99915 1.16259 1.10849 0.98542 0.90788 1.25117 0.91863 0.91880 0.92939 1.81264 1.12513 1.12397 1.08413 0.90565 0.93776 0.94925 0.92546 0.74022 0.77778 0.80613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 8.87 71.98 0.64 -4.84 15 2 C 0.03 1.43 2.64 -12.29 -0.03 1.39 15 3 H 0.05 2.37 8.14 -2.39 -0.02 2.36 15 4 C -0.53 -28.24 8.37 25.60 0.21 -28.02 15 5 H 0.06 3.45 6.75 -2.91 -0.02 3.43 15 6 C 0.02 1.08 5.30 84.65 0.45 1.53 15 7 N -0.91 -49.31 11.32 21.45 0.24 -49.07 15 8 Si 0.96 42.64 29.54 68.60 2.03 44.66 15 9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 10 H -0.28 -12.10 7.11 99.48 0.71 -11.40 15 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 12 C 0.52 21.38 7.11 87.66 0.62 22.00 15 13 O -0.52 -23.04 12.89 -3.03 -0.04 -23.08 15 14 N -0.64 -21.16 5.26 -309.04 -1.63 -22.78 15 15 C 0.05 1.57 6.98 83.30 0.58 2.15 15 16 S 0.29 7.41 19.96 -56.49 -1.13 6.28 15 17 C -0.27 -4.44 11.10 66.66 0.74 -3.70 15 18 C -0.07 -1.30 10.35 22.73 0.24 -1.07 15 19 C -0.14 -3.56 5.88 -20.71 -0.12 -3.69 15 20 C 0.30 8.31 14.98 88.33 1.32 9.63 15 21 N -0.47 -14.80 18.54 19.00 0.35 -14.44 15 22 H 0.08 3.70 6.07 -2.39 -0.01 3.69 15 23 H 0.04 1.59 7.56 -2.39 -0.02 1.57 15 24 H 0.03 1.40 8.14 -2.38 -0.02 1.38 15 25 H 0.27 13.68 8.31 -92.71 -0.77 12.91 15 26 H 0.42 12.88 7.57 -92.71 -0.70 12.17 15 27 H 0.21 1.90 8.06 -2.91 -0.02 1.88 15 28 H 0.18 2.10 8.06 -2.91 -0.02 2.08 15 Total: -1.00 -60.60 269.07 4.99 -55.62 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 0.51 Total: 7.43 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 4.65 Total: -4.61 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -1.03 Total: -86.30 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.04 Total: -23.08 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 7.41 SS G_CDS: -1.13 Total: 6.28 kcal Total: -60.60 4.99 -55.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598801090.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.986 kcal (2) G-P(sol) polarization free energy of solvation -60.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds