Wall clock time and date at job start Mon Mar 30 2020 05:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 13 13 O 1.21290 * 120.00343 * 239.99954 * 12 2 1 14 14 N 1.34779 * 120.00037 * 60.00381 * 12 2 1 15 15 C 1.38802 * 119.99935 * 180.02562 * 14 12 2 16 16 S 1.70440 * 124.64760 * 0.02562 * 15 14 12 17 17 C 1.75477 * 92.52218 * 179.97438 * 16 15 14 18 18 C 1.32615 * 110.77477 * 359.97438 * 17 16 15 19 19 C 1.36988 * 124.64594 * 179.72169 * 15 14 12 20 20 C 1.43200 * 123.57843 * 0.02562 * 19 15 14 21 21 N 5.78087 * 79.16089 * 285.41663 * 2 1 3 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 26 26 H 0.96996 * 119.99844 * 359.97438 * 14 12 2 27 27 H 1.07995 * 124.61016 * 179.97438 * 17 16 15 28 28 H 1.08003 * 123.42152 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 6 2.0323 -0.7104 -1.2304 13 8 2.7296 -1.6966 -1.1192 14 7 1.7068 -0.2500 -2.4546 15 6 2.1690 -0.9047 -3.5879 16 16 3.1518 -2.2970 -3.5694 17 6 3.2067 -2.3760 -5.3216 18 6 2.5070 -1.3860 -5.8592 19 6 1.8929 -0.5237 -4.8744 20 6 1.0846 0.6102 -5.2085 21 7 0.4429 1.5093 -5.4734 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.9026 -0.5284 4.4375 26 1 1.1488 0.5385 -2.5436 27 1 3.7381 -3.1284 -5.8853 28 1 2.4041 -1.2403 -6.9244 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598801108.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:58 Heat of formation + Delta-G solvation = 5.737195 kcal Electronic energy + Delta-G solvation = -15331.662938 eV Core-core repulsion = 12666.862483 eV Total energy + Delta-G solvation = -2664.800455 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.48093 -39.14012 -36.98209 -35.98156 -35.67677 -33.38814 -29.96330 -27.19125 -26.31297 -24.60052 -22.40526 -21.42699 -19.96639 -18.94641 -18.33360 -17.10940 -16.86569 -16.57044 -16.01924 -15.38567 -15.21953 -15.10003 -14.71517 -14.25705 -14.15191 -13.77165 -13.67706 -13.49685 -12.96815 -12.88113 -12.60902 -12.29748 -11.91248 -11.82574 -11.48279 -11.29520 -10.80356 -10.60509 -9.39686 -9.12099 -8.29608 -6.38182 -0.27542 0.31322 1.11334 1.11602 1.32705 1.38172 1.48408 1.52724 1.65784 1.82906 2.31180 2.47182 3.03948 3.08308 3.82289 4.02267 4.30162 4.33553 4.47650 4.61972 4.83462 4.89187 4.99776 5.24282 5.32891 5.35643 5.42283 5.96450 6.28496 6.47037 6.76421 6.88363 7.26237 8.86941 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.031870 B = 0.006514 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.356637 B = 4297.118461 C = 5084.888090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.002 4.002 3 H 0.076 0.924 4 C -0.521 4.521 5 H 0.044 0.956 6 C 0.015 3.985 7 N -0.945 5.945 8 Si 0.949 3.051 9 H -0.262 1.262 10 H -0.300 1.300 11 H -0.234 1.234 12 C 0.525 3.475 13 O -0.516 6.516 14 N -0.633 5.633 15 C 0.055 3.945 16 S 0.281 5.719 17 C -0.265 4.265 18 C -0.073 4.073 19 C -0.137 4.137 20 C 0.298 3.702 21 N -0.465 5.465 22 H 0.077 0.923 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.268 0.732 26 H 0.425 0.575 27 H 0.204 0.796 28 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.675 0.067 -17.938 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 H 0.094 0.906 4 C -0.559 4.559 5 H 0.063 0.937 6 C -0.182 4.182 7 N -0.584 5.584 8 Si 0.774 3.226 9 H -0.188 1.188 10 H -0.228 1.228 11 H -0.157 1.157 12 C 0.314 3.686 13 O -0.391 6.391 14 N -0.277 5.277 15 C -0.167 4.167 16 S 0.542 5.458 17 C -0.400 4.400 18 C -0.101 4.101 19 C -0.159 4.159 20 C -0.017 4.017 21 N -0.143 5.143 22 H 0.096 0.904 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.264 0.736 27 H 0.221 0.779 28 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -0.550 -0.123 -16.862 16.872 hybrid contribution -0.984 1.402 -0.210 1.726 sum -1.534 1.278 -17.072 17.189 Atomic orbital electron populations 1.22098 0.94354 1.02321 1.01612 1.19273 0.95435 0.97818 0.89850 0.90592 1.20985 1.32083 1.13243 0.89576 0.93737 1.25869 0.97192 1.00178 0.95006 1.70039 1.47170 1.42452 0.98751 0.85866 0.79082 0.79562 0.78073 1.18768 1.22812 1.15734 1.21586 0.78601 0.84100 0.84295 1.90533 1.36981 1.26555 1.85004 1.43189 1.50864 1.30844 1.02843 1.22413 1.03056 1.02033 0.89185 1.84849 1.42773 1.17078 1.01057 1.26236 1.08579 1.05736 0.99495 1.20857 0.96601 0.92693 0.99994 1.16213 1.10304 0.98770 0.90632 1.25052 0.91862 0.91811 0.92987 1.81275 1.12443 1.12331 1.08265 0.90376 0.93155 0.92563 0.92282 0.73622 0.77942 0.80558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 8.57 71.98 0.62 -4.63 15 2 C 0.00 -0.09 2.23 -12.29 -0.03 -0.12 15 3 H 0.08 2.98 7.20 -2.39 -0.02 2.96 15 4 C -0.52 -28.72 8.96 25.60 0.23 -28.49 15 5 H 0.04 2.86 7.00 -2.91 -0.02 2.84 15 6 C 0.02 0.85 5.45 84.66 0.46 1.31 15 7 N -0.94 -57.81 13.96 21.45 0.30 -57.51 15 8 Si 0.95 41.17 24.37 68.60 1.67 42.84 15 9 H -0.26 -10.72 6.87 99.48 0.68 -10.03 15 10 H -0.30 -13.32 7.11 99.48 0.71 -12.62 15 11 H -0.23 -8.84 6.53 99.48 0.65 -8.19 15 12 C 0.52 20.32 7.11 87.66 0.62 20.94 15 13 O -0.52 -23.08 12.89 -3.06 -0.04 -23.12 15 14 N -0.63 -18.91 5.26 -309.03 -1.63 -20.53 15 15 C 0.05 1.49 6.98 83.29 0.58 2.07 15 16 S 0.28 7.11 19.96 -56.49 -1.13 5.98 15 17 C -0.27 -4.26 11.10 66.66 0.74 -3.52 15 18 C -0.07 -1.21 10.35 22.73 0.24 -0.98 15 19 C -0.14 -3.14 5.88 -20.71 -0.12 -3.26 15 20 C 0.30 7.53 14.98 88.33 1.32 8.85 15 21 N -0.47 -13.38 18.54 19.00 0.35 -13.02 15 22 H 0.08 2.10 7.56 -2.39 -0.02 2.09 15 23 H 0.05 1.87 3.27 -2.39 -0.01 1.86 15 24 H 0.06 2.07 8.14 -2.38 -0.02 2.05 15 25 H 0.27 15.29 8.31 -92.70 -0.77 14.52 15 26 H 0.42 10.77 7.57 -92.71 -0.70 10.07 15 27 H 0.20 1.84 8.06 -2.91 -0.02 1.82 15 28 H 0.18 1.89 8.06 -2.91 -0.02 1.87 15 Total: -1.00 -68.58 262.24 4.63 -63.95 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 0.44 Total: 9.24 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 4.66 Total: -7.83 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -0.97 Total: -91.06 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.04 Total: -23.12 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.67 Total: 42.84 kcal Atomic # 16 Polarization: 7.11 SS G_CDS: -1.13 Total: 5.98 kcal Total: -68.58 4.63 -63.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598801108.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.683 kcal (2) G-P(sol) polarization free energy of solvation -68.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds