Wall clock time and date at job start Mon Mar 30 2020 06:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50702 * 109.46851 * 2 1 4 4 N 1.32061 * 125.93502 * 270.03779 * 3 2 1 5 5 C 1.33423 * 110.01677 * 179.97438 * 4 3 2 6 6 C 1.40296 * 131.72065 * 180.02562 * 5 4 3 7 7 C 1.36734 * 119.42540 * 180.02562 * 6 5 4 8 8 Cl 1.73598 * 120.17041 * 180.02562 * 7 6 5 9 9 C 1.40285 * 119.66523 * 0.06122 * 7 6 5 10 10 C 1.35283 * 120.11100 * 359.90631 * 9 7 6 11 11 N 1.36268 * 120.59613 * 0.06212 * 10 9 7 12 12 C 1.38515 * 132.42826 * 179.97438 * 11 10 9 13 13 C 1.39827 * 126.89587 * 0.02562 * 12 11 10 14 14 H 1.07999 * 119.99779 * 213.38208 * 13 12 11 15 15 C 1.39860 * 120.00213 * 33.36877 * 13 12 11 16 16 N 1.31044 * 119.99414 * 20.46138 * 15 13 12 17 17 Si 1.86796 * 120.00074 * 200.45870 * 15 13 12 18 18 H 1.48494 * 109.47297 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46968 * 120.00186 * 17 15 13 20 20 H 1.48504 * 109.46792 * 240.00050 * 17 15 13 21 21 H 1.09000 * 109.47070 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46606 * 300.00065 * 1 2 3 23 23 H 1.08994 * 109.47088 * 60.00291 * 1 2 3 24 24 H 1.09000 * 109.46606 * 239.99935 * 2 1 3 25 25 H 1.08994 * 109.47088 * 119.99709 * 2 1 3 26 26 H 1.08001 * 120.28475 * 359.97438 * 6 5 4 27 27 H 1.08000 * 119.95146 * 179.97438 * 9 7 6 28 28 H 1.07994 * 119.70403 * 180.34242 * 10 9 7 29 29 H 0.96999 * 119.99965 * 176.38068 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2900 2.1518 -1.0693 5 6 2.7173 3.3616 -0.7033 6 6 3.1112 4.4793 -1.4543 7 6 3.5132 5.6152 -0.8079 8 17 4.0039 7.0097 -1.7179 9 6 3.5279 5.6477 0.5945 10 6 3.1441 4.5607 1.3027 11 7 2.7415 3.4250 0.6663 12 6 2.3075 2.1956 1.1339 13 6 2.1714 1.8060 2.4699 14 1 2.3552 0.7805 2.7547 15 6 1.7976 2.7442 3.4374 16 7 1.1960 3.8516 3.0781 17 14 2.1560 2.4188 5.2415 18 1 2.8385 1.1076 5.3820 19 1 3.0332 3.4925 5.7734 20 1 0.8814 2.3981 6.0034 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.0977 4.4426 -2.5336 27 1 3.8450 6.5423 1.1099 28 1 3.1527 4.5948 2.3820 29 1 0.8898 4.4779 3.7524 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953067826.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:47 Heat of formation + Delta-G solvation = 52.518925 kcal Electronic energy + Delta-G solvation = -15899.575316 eV Core-core repulsion = 13234.759763 eV Total energy + Delta-G solvation = -2664.815553 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.11830 -36.79318 -35.52177 -34.15886 -32.52417 -31.65783 -28.76903 -28.52632 -25.01102 -23.46549 -21.60696 -21.44632 -19.02081 -17.94555 -16.06398 -15.68146 -15.27629 -14.97933 -14.41725 -13.86912 -13.37284 -13.06601 -12.89756 -12.21666 -11.93120 -11.88696 -11.61128 -11.52212 -11.31848 -10.94786 -10.61694 -10.53936 -10.41428 -10.18033 -10.16094 -9.62028 -9.17883 -8.78444 -7.56779 -7.14618 -6.69061 -4.48081 1.74978 2.30206 2.73347 2.87091 2.94691 3.00263 3.74059 3.85790 4.09595 4.60403 4.79106 5.39818 5.57511 5.77309 5.94310 5.99915 6.19138 6.28318 6.38807 6.54005 6.64741 6.72942 6.81755 6.86860 6.96806 7.01862 7.11473 7.44843 7.67947 8.08570 8.26230 8.48666 8.70631 9.29532 9.92710 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.019560 B = 0.009040 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.180548 B = 3096.645314 C = 4325.001214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.012 4.012 3 C -0.057 4.057 4 N -0.463 5.463 5 C 0.117 3.883 6 C -0.049 4.049 7 C -0.063 4.063 8 Cl -0.094 7.094 9 C -0.196 4.196 10 C 0.144 3.856 11 N -0.382 5.382 12 C 0.192 3.808 13 C -0.448 4.448 14 H 0.101 0.899 15 C 0.068 3.932 16 N -0.808 5.808 17 Si 0.912 3.088 18 H -0.258 1.258 19 H -0.271 1.271 20 H -0.272 1.272 21 H 0.043 0.957 22 H 0.057 0.943 23 H 0.046 0.954 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.156 0.844 29 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.203 1.155 0.001 2.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.050 4.050 3 C -0.193 4.193 4 N -0.182 5.182 5 C -0.118 4.118 6 C -0.070 4.070 7 C -0.094 4.094 8 Cl -0.065 7.065 9 C -0.219 4.219 10 C 0.021 3.979 11 N -0.061 5.061 12 C 0.080 3.920 13 C -0.483 4.483 14 H 0.119 0.881 15 C -0.149 4.149 16 N -0.435 5.435 17 Si 0.736 3.264 18 H -0.181 1.181 19 H -0.196 1.196 20 H -0.198 1.198 21 H 0.062 0.938 22 H 0.076 0.924 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.173 0.827 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.084 1.217 -0.847 2.557 hybrid contribution 0.069 0.695 1.648 1.789 sum 2.153 1.911 0.800 2.988 Atomic orbital electron populations 1.21674 0.96179 0.99791 1.02018 1.19417 0.94699 0.90142 1.00759 1.20960 1.12896 0.97853 0.87598 1.69657 1.16539 1.00735 1.31306 1.19654 1.15545 0.95470 0.81118 1.19604 0.99288 0.89028 0.99076 1.20043 1.09274 0.88665 0.91435 1.98284 1.90672 1.42589 1.74968 1.20147 1.11102 0.98958 0.91727 1.21480 0.93374 0.84358 0.98642 1.42696 1.44612 1.11354 1.07391 1.18650 0.97254 0.81390 0.94665 1.18503 1.43104 0.97578 0.89070 0.88108 1.25937 0.92751 0.94097 1.02092 1.69907 1.26895 1.09709 1.37035 0.86169 0.79250 0.80016 0.80988 1.18111 1.19619 1.19765 0.93840 0.92354 0.93446 0.92567 0.91561 0.84889 0.84906 0.82661 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.90 37.16 0.37 -2.18 15 2 C -0.01 -0.23 6.30 -27.88 -0.18 -0.41 15 3 C -0.06 -1.40 6.46 -81.81 -0.53 -1.93 15 4 N -0.46 -11.69 11.23 -8.11 -0.09 -11.78 15 5 C 0.12 2.87 7.77 -155.49 -1.21 1.66 15 6 C -0.05 -1.04 9.88 -39.35 -0.39 -1.43 15 7 C -0.06 -1.23 6.33 -39.36 -0.25 -1.48 15 8 Cl -0.09 -1.54 28.97 -51.86 -1.50 -3.04 15 9 C -0.20 -3.89 9.80 -39.87 -0.39 -4.28 15 10 C 0.14 3.23 9.30 -16.63 -0.15 3.07 15 11 N -0.38 -9.48 2.91 -60.04 -0.17 -9.65 15 12 C 0.19 4.88 6.26 -83.57 -0.52 4.35 15 13 C -0.45 -10.79 8.90 -38.38 -0.34 -11.13 15 14 H 0.10 2.30 7.64 -52.49 -0.40 1.90 15 15 C 0.07 1.55 4.49 -17.28 -0.08 1.47 15 16 N -0.81 -19.18 10.63 55.55 0.59 -18.59 15 17 Si 0.91 17.07 29.61 -169.99 -5.03 12.03 15 18 H -0.26 -4.78 7.11 56.52 0.40 -4.38 15 19 H -0.27 -5.01 7.11 56.52 0.40 -4.60 15 20 H -0.27 -5.10 7.11 56.52 0.40 -4.70 15 21 H 0.04 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 25 H 0.07 1.24 7.72 -51.93 -0.40 0.84 15 26 H 0.13 2.55 8.06 -52.49 -0.42 2.13 15 27 H 0.13 2.25 8.06 -52.49 -0.42 1.82 15 28 H 0.16 3.42 6.02 -52.49 -0.32 3.11 15 29 H 0.29 6.20 8.30 -40.82 -0.34 5.86 15 LS Contribution 268.42 15.07 4.04 4.04 Total: -1.00 -26.58 268.42 -8.62 -35.21 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -2.79 Total: 4.05 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -3.67 Total: -12.27 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.33 Total: -40.02 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.03 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -1.50 Total: -3.04 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -26.58 -8.62 -35.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067826.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.727 kcal (2) G-P(sol) polarization free energy of solvation -26.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds