Wall clock time and date at job start Mon Mar 30 2020 06:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50702 * 109.46851 * 2 1 4 4 N 1.32061 * 125.93502 * 270.03779 * 3 2 1 5 5 C 1.33423 * 110.01677 * 179.97438 * 4 3 2 6 6 C 1.40296 * 131.72065 * 180.02562 * 5 4 3 7 7 C 1.36734 * 119.42540 * 180.02562 * 6 5 4 8 8 Cl 1.73598 * 120.17041 * 180.02562 * 7 6 5 9 9 C 1.40285 * 119.66523 * 0.06122 * 7 6 5 10 10 C 1.35283 * 120.11100 * 359.90631 * 9 7 6 11 11 N 1.36268 * 120.59613 * 0.06212 * 10 9 7 12 12 C 1.38515 * 132.42826 * 179.97438 * 11 10 9 13 13 C 1.39827 * 126.89587 * 0.02562 * 12 11 10 14 14 H 1.07999 * 119.99779 * 213.38208 * 13 12 11 15 15 C 1.39860 * 120.00213 * 33.36877 * 13 12 11 16 16 N 1.31044 * 119.99414 * 20.46138 * 15 13 12 17 17 Si 1.86796 * 120.00074 * 200.45870 * 15 13 12 18 18 H 1.48494 * 109.47297 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46968 * 120.00186 * 17 15 13 20 20 H 1.48504 * 109.46792 * 240.00050 * 17 15 13 21 21 H 1.09000 * 109.47070 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46606 * 300.00065 * 1 2 3 23 23 H 1.08994 * 109.47088 * 60.00291 * 1 2 3 24 24 H 1.09000 * 109.46606 * 239.99935 * 2 1 3 25 25 H 1.08994 * 109.47088 * 119.99709 * 2 1 3 26 26 H 1.08001 * 120.28475 * 359.97438 * 6 5 4 27 27 H 1.08000 * 119.95146 * 179.97438 * 9 7 6 28 28 H 1.07994 * 119.70403 * 180.34242 * 10 9 7 29 29 H 0.96999 * 119.99965 * 176.38068 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2900 2.1518 -1.0693 5 6 2.7173 3.3616 -0.7033 6 6 3.1112 4.4793 -1.4543 7 6 3.5132 5.6152 -0.8079 8 17 4.0039 7.0097 -1.7179 9 6 3.5279 5.6477 0.5945 10 6 3.1441 4.5607 1.3027 11 7 2.7415 3.4250 0.6663 12 6 2.3075 2.1956 1.1339 13 6 2.1714 1.8060 2.4699 14 1 2.3552 0.7805 2.7547 15 6 1.7976 2.7442 3.4374 16 7 1.1960 3.8516 3.0781 17 14 2.1560 2.4188 5.2415 18 1 2.8385 1.1076 5.3820 19 1 3.0332 3.4925 5.7734 20 1 0.8814 2.3981 6.0034 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.0977 4.4426 -2.5336 27 1 3.8450 6.5423 1.1099 28 1 3.1527 4.5948 2.3820 29 1 0.8898 4.4779 3.7524 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953067826.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:47 Heat of formation + Delta-G solvation = 40.080745 kcal Electronic energy + Delta-G solvation = -15900.114676 eV Core-core repulsion = 13234.759763 eV Total energy + Delta-G solvation = -2665.354913 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.88292 -38.41343 -37.08933 -35.89567 -34.12305 -33.38285 -30.49325 -30.24056 -26.75523 -25.08526 -23.30933 -23.17651 -20.75058 -19.69164 -17.76140 -17.41912 -16.92400 -16.58444 -16.17408 -15.54294 -14.98301 -14.63632 -14.48542 -13.78223 -13.56745 -13.51380 -13.18116 -13.07726 -12.96111 -12.54417 -12.16432 -12.02628 -11.91214 -11.89318 -11.72042 -11.29047 -10.82317 -10.60057 -9.31707 -8.86883 -8.44480 -6.27579 0.05839 0.59903 1.16478 1.37374 1.42188 1.56086 2.12731 2.20408 2.35643 2.83762 3.02315 3.71397 3.93257 4.16722 4.32668 4.42041 4.61000 4.72601 4.73815 4.93592 5.07196 5.12401 5.15823 5.22185 5.30384 5.41595 5.52115 5.71390 5.93199 6.30850 6.48843 6.73131 6.93557 7.48207 8.24964 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.019560 B = 0.009040 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.180548 B = 3096.645314 C = 4325.001214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.011 4.011 3 C -0.078 4.078 4 N -0.491 5.491 5 C 0.097 3.903 6 C -0.066 4.066 7 C -0.051 4.051 8 Cl -0.056 7.056 9 C -0.181 4.181 10 C 0.117 3.883 11 N -0.390 5.390 12 C 0.157 3.843 13 C -0.472 4.472 14 H 0.103 0.897 15 C 0.037 3.963 16 N -0.837 5.837 17 Si 0.983 3.017 18 H -0.255 1.255 19 H -0.264 1.264 20 H -0.269 1.269 21 H 0.080 0.920 22 H 0.036 0.964 23 H 0.035 0.965 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.150 0.850 27 H 0.167 0.833 28 H 0.154 0.846 29 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.716 1.972 0.528 3.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.050 4.050 3 C -0.213 4.213 4 N -0.211 5.211 5 C -0.138 4.138 6 C -0.087 4.087 7 C -0.082 4.082 8 Cl -0.027 7.027 9 C -0.203 4.203 10 C -0.005 4.005 11 N -0.068 5.068 12 C 0.045 3.955 13 C -0.507 4.507 14 H 0.121 0.879 15 C -0.178 4.178 16 N -0.466 5.466 17 Si 0.803 3.197 18 H -0.179 1.179 19 H -0.189 1.189 20 H -0.194 1.194 21 H 0.099 0.901 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.168 0.832 27 H 0.184 0.816 28 H 0.171 0.829 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.597 2.036 -0.329 3.317 hybrid contribution -0.038 0.612 1.366 1.497 sum 2.559 2.648 1.036 3.826 Atomic orbital electron populations 1.21570 0.94992 1.01674 1.00320 1.19534 0.95649 0.88176 1.01615 1.21655 1.12877 0.99449 0.87326 1.69644 1.18060 1.01474 1.31878 1.20270 1.15614 0.96257 0.81651 1.19852 1.00073 0.88841 0.99918 1.20190 1.06969 0.89307 0.91764 1.98301 1.90119 1.40214 1.74096 1.20563 1.08759 0.99065 0.91962 1.21711 0.95014 0.84761 0.99007 1.42873 1.44487 1.11845 1.07620 1.19089 0.98621 0.82179 0.95612 1.18713 1.44330 0.98251 0.89363 0.87886 1.26678 0.91725 0.93491 1.05876 1.69956 1.27451 1.10581 1.38606 0.85117 0.79015 0.79944 0.75584 1.17866 1.18894 1.19442 0.90090 0.94475 0.94581 0.91467 0.90748 0.83205 0.81601 0.82858 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 9.90 71.99 0.71 -3.96 15 2 C -0.01 -0.46 6.30 29.85 0.19 -0.27 15 3 C -0.08 -3.91 6.46 42.97 0.28 -3.64 15 4 N -0.49 -25.35 11.23 -179.58 -2.02 -27.37 15 5 C 0.10 4.85 7.77 133.67 1.04 5.89 15 6 C -0.07 -2.76 9.88 22.42 0.22 -2.54 15 7 C -0.05 -1.89 6.33 22.42 0.14 -1.75 15 8 Cl -0.06 -1.68 28.97 -2.72 -0.08 -1.75 15 9 C -0.18 -6.85 9.80 22.09 0.22 -6.63 15 10 C 0.12 5.24 9.30 83.32 0.77 6.02 15 11 N -0.39 -19.69 2.91 -343.88 -1.00 -20.69 15 12 C 0.16 8.18 6.26 38.91 0.24 8.42 15 13 C -0.47 -23.21 8.90 23.05 0.21 -23.00 15 14 H 0.10 4.81 7.64 -2.91 -0.02 4.79 15 15 C 0.04 1.66 4.49 85.20 0.38 2.05 15 16 N -0.84 -40.07 10.63 21.83 0.23 -39.83 15 17 Si 0.98 34.64 29.61 68.60 2.03 36.67 15 18 H -0.26 -8.81 7.11 99.48 0.71 -8.10 15 19 H -0.26 -8.95 7.11 99.48 0.71 -8.25 15 20 H -0.27 -9.31 7.11 99.48 0.71 -8.60 15 21 H 0.08 2.31 8.14 -2.39 -0.02 2.29 15 22 H 0.04 1.48 8.14 -2.39 -0.02 1.46 15 23 H 0.03 1.36 8.14 -2.39 -0.02 1.34 15 24 H 0.07 2.50 8.14 -2.39 -0.02 2.48 15 25 H 0.07 2.81 7.72 -2.39 -0.02 2.79 15 26 H 0.15 5.61 8.06 -2.91 -0.02 5.59 15 27 H 0.17 5.07 8.06 -2.91 -0.02 5.05 15 28 H 0.15 6.79 6.02 -2.91 -0.02 6.78 15 29 H 0.29 12.66 8.30 -92.71 -0.77 11.89 15 Total: -1.00 -57.61 268.42 4.74 -52.87 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 1.17 Total: 19.51 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 4.40 Total: -19.41 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -2.78 Total: -87.89 kcal Atomic # 14 Polarization: 34.64 SS G_CDS: 2.03 Total: 36.67 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.08 Total: -1.75 kcal Total: -57.61 4.74 -52.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067826.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.951 kcal (2) G-P(sol) polarization free energy of solvation -57.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds