Wall clock time and date at job start Mon Mar 30 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48503 * 109.47155 * 240.00536 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00539 * 3 2 1 7 7 C 1.37875 * 119.99408 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99491 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00542 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 O 1.21342 * 119.99991 * 359.97438 * 12 11 10 14 14 C 1.46489 * 120.00166 * 180.02562 * 12 11 10 15 15 C 1.40175 * 120.16395 * 359.71983 * 14 12 11 16 16 C 1.36424 * 120.05491 * 179.74104 * 15 14 12 17 17 C 1.39281 * 120.41048 * 0.51697 * 16 15 14 18 18 O 1.35663 * 119.83490 * 179.74023 * 17 16 15 19 19 C 1.38742 * 120.33053 * 359.75752 * 17 16 15 20 20 C 1.38427 * 119.93359 * 359.97438 * 19 17 16 21 21 O 1.35602 * 120.19665 * 179.97438 * 20 19 17 22 22 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47390 * 60.00123 * 9 7 2 24 24 H 1.09001 * 109.46948 * 299.99764 * 9 7 2 25 25 H 1.09001 * 109.47502 * 60.00161 * 10 9 7 26 26 H 1.09001 * 109.47289 * 299.99957 * 10 9 7 27 27 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 28 28 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 29 29 H 1.07999 * 119.97178 * 359.97438 * 15 14 12 30 30 H 1.08001 * 119.79503 * 180.26020 * 16 15 14 31 31 H 0.96700 * 113.99927 * 270.01911 * 18 17 16 32 32 H 1.07995 * 120.02990 * 179.97438 * 19 17 16 33 33 H 0.96700 * 114.00167 * 270.02013 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 2.4593 -6.1326 -0.0005 13 8 3.6523 -5.9109 -0.0001 14 6 1.9710 -7.5137 -0.0016 15 6 0.5936 -7.7738 0.0028 16 6 0.1412 -9.0608 -0.0035 17 6 1.0407 -10.1243 -0.0034 18 8 0.5780 -11.3996 -0.0044 19 6 2.4075 -9.8859 -0.0020 20 6 2.8818 -8.5854 -0.0012 21 8 4.2166 -8.3462 0.0007 22 1 -0.4850 0.8400 0.0004 23 1 0.6239 -2.5568 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8718 -3.6044 0.8895 26 1 2.8718 -3.6044 -0.8905 27 1 0.8531 -5.0451 0.8886 28 1 0.8537 -5.0446 -0.8913 29 1 -0.1102 -6.9546 0.0073 30 1 -0.9209 -9.2564 -0.0043 31 1 0.4430 -11.7696 0.8787 32 1 3.1006 -10.7141 -0.0016 33 1 4.6026 -8.2773 0.8846 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001736279.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:09 Heat of formation + Delta-G solvation = -113.266751 kcal Electronic energy + Delta-G solvation = -17212.101735 eV Core-core repulsion = 14202.928354 eV Total energy + Delta-G solvation = -3009.173381 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.60384 -38.91126 -37.74923 -36.04096 -34.20054 -32.12808 -30.89090 -30.02238 -27.77794 -24.51852 -23.37450 -22.58341 -20.48978 -19.49223 -19.25839 -17.36807 -16.78697 -16.48854 -16.11863 -15.80337 -15.08383 -14.67907 -14.45588 -14.24477 -14.01940 -13.29448 -13.15928 -12.71982 -12.20280 -12.08448 -11.77798 -11.33158 -11.08990 -11.00532 -10.78268 -10.59319 -10.54932 -9.68115 -9.63998 -9.22832 -9.20431 -8.93978 -8.83408 -8.31591 -5.97397 -3.98969 0.38322 0.96977 2.40911 3.32395 3.36637 3.40093 3.43790 3.70717 4.10225 4.18443 4.50018 4.54084 4.75680 5.09788 5.28791 5.38540 5.39805 5.56936 5.69758 5.71874 5.90033 6.00346 6.06932 6.28280 6.38740 6.70687 6.90933 7.13973 7.20143 7.47962 7.70261 7.82675 7.83741 8.03081 8.47014 9.07862 9.64952 11.14038 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.046309 B = 0.003778 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.484440 B = 7410.386507 C = 7984.010606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.101 4.101 11 C -0.164 4.164 12 C 0.389 3.611 13 O -0.437 6.437 14 C -0.203 4.203 15 C -0.039 4.039 16 C -0.169 4.169 17 C 0.147 3.853 18 O -0.497 6.497 19 C -0.192 4.192 20 C 0.180 3.820 21 O -0.478 6.478 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.146 0.854 30 H 0.137 0.863 31 H 0.395 0.605 32 H 0.139 0.861 33 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.031 -21.885 3.391 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.139 4.139 11 C -0.201 4.201 12 C 0.266 3.734 13 O -0.311 6.311 14 C -0.204 4.204 15 C -0.058 4.058 16 C -0.187 4.187 17 C 0.103 3.897 18 O -0.308 6.308 19 C -0.211 4.211 20 C 0.134 3.866 21 O -0.289 6.289 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.163 0.837 30 H 0.155 0.845 31 H 0.252 0.748 32 H 0.156 0.844 33 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 0.429 -21.591 2.184 21.705 hybrid contribution 0.311 0.723 0.944 1.229 sum 0.740 -20.867 3.128 21.114 Atomic orbital electron populations 1.69951 1.06030 1.26656 1.51089 1.25019 0.94861 0.99236 0.95365 0.86652 0.79578 0.83071 0.78680 1.20218 1.21320 1.20242 1.21243 0.93138 0.91082 1.50330 0.92672 1.19118 0.93950 0.91425 0.97137 1.21490 0.98776 0.92152 1.01442 1.22165 0.99059 0.95079 1.03829 1.22527 0.90310 0.88678 0.71916 1.90542 1.18594 1.87107 1.34855 1.21307 0.94277 0.95977 1.08853 1.21116 0.94180 0.97171 0.93287 1.21172 1.00602 0.92141 1.04816 1.18522 0.90554 0.84149 0.96520 1.84750 1.86957 1.25302 1.33802 1.21692 0.95572 0.97019 1.06771 1.18523 0.83813 0.90433 0.93853 1.84734 1.17018 1.93629 1.33513 0.93006 0.96570 0.96602 0.92861 0.92811 0.88886 0.88865 0.83665 0.84528 0.74768 0.84358 0.74468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 10 C -0.10 -2.17 4.44 -26.73 -0.12 -2.29 16 11 C -0.16 -2.69 4.30 -27.88 -0.12 -2.81 16 12 C 0.39 6.22 7.10 -30.99 -0.22 6.00 16 13 O -0.44 -8.28 14.79 -16.43 -0.24 -8.52 16 14 C -0.20 -2.65 5.88 -104.94 -0.62 -3.27 16 15 C -0.04 -0.41 9.41 -39.51 -0.37 -0.78 16 16 C -0.17 -1.55 9.91 -39.85 -0.39 -1.95 16 17 C 0.15 1.39 6.71 -39.01 -0.26 1.13 16 18 O -0.50 -3.84 13.48 -18.69 -0.25 -4.09 16 19 C -0.19 -1.96 9.92 -39.33 -0.39 -2.35 16 20 C 0.18 2.22 6.72 -38.60 -0.26 1.96 16 21 O -0.48 -6.08 11.57 -40.44 -0.47 -6.55 16 22 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 1.17 8.10 -51.93 -0.42 0.75 16 26 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 27 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 28 H 0.09 1.41 8.09 -51.93 -0.42 0.99 16 29 H 0.15 1.30 7.03 -52.49 -0.37 0.93 16 30 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.40 0.99 9.06 45.56 0.41 1.40 16 32 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.40 3.37 9.06 45.56 0.41 3.79 16 LS Contribution 293.86 15.07 4.43 4.43 Total: -1.00 -35.38 293.86 -6.58 -41.96 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -2.46 Total: -0.08 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -3.30 Total: -17.80 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.74 Total: -26.36 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.96 Total: -19.16 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -35.38 -6.58 -41.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001736279.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.311 kcal (2) G-P(sol) polarization free energy of solvation -35.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds