Wall clock time and date at job start Mon Mar 30 2020 05:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48503 * 109.47155 * 240.00536 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00539 * 3 2 1 7 7 C 1.37875 * 119.99408 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99491 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00542 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 O 1.21342 * 119.99991 * 359.97438 * 12 11 10 14 14 C 1.46489 * 120.00166 * 180.02562 * 12 11 10 15 15 C 1.40175 * 120.16395 * 359.71983 * 14 12 11 16 16 C 1.36424 * 120.05491 * 179.74104 * 15 14 12 17 17 C 1.39281 * 120.41048 * 0.51697 * 16 15 14 18 18 O 1.35663 * 119.83490 * 179.74023 * 17 16 15 19 19 C 1.38742 * 120.33053 * 359.75752 * 17 16 15 20 20 C 1.38427 * 119.93359 * 359.97438 * 19 17 16 21 21 O 1.35602 * 120.19665 * 179.97438 * 20 19 17 22 22 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47390 * 60.00123 * 9 7 2 24 24 H 1.09001 * 109.46948 * 299.99764 * 9 7 2 25 25 H 1.09001 * 109.47502 * 60.00161 * 10 9 7 26 26 H 1.09001 * 109.47289 * 299.99957 * 10 9 7 27 27 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 28 28 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 29 29 H 1.07999 * 119.97178 * 359.97438 * 15 14 12 30 30 H 1.08001 * 119.79503 * 180.26020 * 16 15 14 31 31 H 0.96700 * 113.99927 * 270.01911 * 18 17 16 32 32 H 1.07995 * 120.02990 * 179.97438 * 19 17 16 33 33 H 0.96700 * 114.00167 * 270.02013 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 2.4593 -6.1326 -0.0005 13 8 3.6523 -5.9109 -0.0001 14 6 1.9710 -7.5137 -0.0016 15 6 0.5936 -7.7738 0.0028 16 6 0.1412 -9.0608 -0.0035 17 6 1.0407 -10.1243 -0.0034 18 8 0.5780 -11.3996 -0.0044 19 6 2.4075 -9.8859 -0.0020 20 6 2.8818 -8.5854 -0.0012 21 8 4.2166 -8.3462 0.0007 22 1 -0.4850 0.8400 0.0004 23 1 0.6239 -2.5568 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8718 -3.6044 0.8895 26 1 2.8718 -3.6044 -0.8905 27 1 0.8531 -5.0451 0.8886 28 1 0.8537 -5.0446 -0.8913 29 1 -0.1102 -6.9546 0.0073 30 1 -0.9209 -9.2564 -0.0043 31 1 0.4430 -11.7696 0.8787 32 1 3.1006 -10.7141 -0.0016 33 1 4.6026 -8.2773 0.8846 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001736279.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:08 Heat of formation + Delta-G solvation = -138.559342 kcal Electronic energy + Delta-G solvation = -17213.198504 eV Core-core repulsion = 14202.928354 eV Total energy + Delta-G solvation = -3010.270150 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.52487 -39.92515 -38.66170 -36.83977 -36.11048 -34.04308 -31.89939 -30.92141 -29.46712 -26.16437 -24.45979 -23.61016 -22.13202 -20.72277 -20.06162 -18.50609 -18.13767 -17.69569 -17.33135 -16.75690 -16.50629 -16.33998 -15.59188 -15.39705 -14.96011 -14.72832 -14.28036 -14.09759 -13.71255 -13.43348 -13.12537 -12.88658 -12.59655 -12.50232 -12.38229 -11.95498 -11.67903 -11.55395 -11.48250 -11.26524 -10.54116 -10.44983 -10.00405 -9.66728 -8.20191 -6.30379 -0.50429 0.20061 1.36913 1.39433 1.42272 1.50391 2.41115 2.50113 2.93229 3.08422 3.12586 3.38832 3.76097 4.06092 4.12479 4.27155 4.28507 4.38441 4.58567 4.81838 4.85497 4.97305 5.11074 5.15225 5.19368 5.23867 5.29588 5.52853 5.59303 5.75330 5.86527 6.27656 6.61299 6.69769 6.79608 6.84961 7.38189 8.91044 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.046309 B = 0.003778 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.484440 B = 7410.386507 C = 7984.010606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.051 0.949 9 C 0.026 3.974 10 C -0.089 4.089 11 C -0.158 4.158 12 C 0.395 3.605 13 O -0.480 6.480 14 C -0.230 4.230 15 C -0.034 4.034 16 C -0.167 4.167 17 C 0.164 3.836 18 O -0.502 6.502 19 C -0.196 4.196 20 C 0.170 3.830 21 O -0.498 6.498 22 H 0.265 0.735 23 H 0.000 1.000 24 H 0.003 0.997 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.116 0.884 28 H 0.109 0.891 29 H 0.160 0.840 30 H 0.163 0.837 31 H 0.420 0.580 32 H 0.152 0.848 33 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 -23.150 3.629 23.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.069 0.931 9 C -0.011 4.011 10 C -0.127 4.127 11 C -0.195 4.195 12 C 0.275 3.725 13 O -0.357 6.357 14 C -0.231 4.231 15 C -0.052 4.052 16 C -0.185 4.185 17 C 0.119 3.881 18 O -0.317 6.317 19 C -0.215 4.215 20 C 0.125 3.875 21 O -0.311 6.311 22 H 0.074 0.926 23 H 0.018 0.982 24 H 0.021 0.979 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.134 0.866 28 H 0.127 0.873 29 H 0.178 0.822 30 H 0.181 0.819 31 H 0.282 0.718 32 H 0.170 0.830 33 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -0.371 -22.885 2.451 23.019 hybrid contribution 0.484 0.986 0.887 1.412 sum 0.113 -21.899 3.338 22.152 Atomic orbital electron populations 1.70057 1.07477 1.27864 1.51461 1.25904 0.95839 1.03045 0.94658 0.85561 0.78403 0.78413 0.79045 1.19532 1.20321 1.19361 1.21682 0.93338 0.92902 1.50914 0.93103 1.19013 0.94210 0.92338 0.95555 1.21230 0.97798 0.93545 1.00111 1.22080 0.99045 0.92630 1.05735 1.22620 0.89419 0.89962 0.70494 1.90528 1.19965 1.87779 1.37438 1.21074 0.95661 0.94158 1.12222 1.21293 0.93131 0.98451 0.92307 1.21435 1.01933 0.91335 1.03837 1.18602 0.90196 0.84983 0.94309 1.84691 1.86634 1.24335 1.36044 1.21798 0.96455 0.96389 1.06880 1.18719 0.83511 0.91179 0.94135 1.84681 1.17646 1.93794 1.34996 0.92637 0.98171 0.97891 0.93917 0.94421 0.86644 0.87254 0.82214 0.81925 0.71779 0.83030 0.72929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.96 45.25 29.54 68.60 2.03 47.27 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.55 -32.53 9.11 25.60 0.23 -32.29 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.03 1.37 4.97 29.85 0.15 1.52 16 10 C -0.09 -3.92 4.44 30.60 0.14 -3.79 16 11 C -0.16 -5.13 4.30 29.85 0.13 -5.00 16 12 C 0.39 12.69 7.10 27.84 0.20 12.88 16 13 O -0.48 -18.74 14.79 17.75 0.26 -18.48 16 14 C -0.23 -5.80 5.88 -20.07 -0.12 -5.92 16 15 C -0.03 -0.63 9.41 22.32 0.21 -0.42 16 16 C -0.17 -2.52 9.91 22.10 0.22 -2.30 16 17 C 0.16 2.58 6.71 22.64 0.15 2.73 16 18 O -0.50 -5.88 13.48 -89.79 -1.21 -7.09 16 19 C -0.20 -3.62 9.92 22.44 0.22 -3.40 16 20 C 0.17 4.08 6.72 22.90 0.15 4.24 16 21 O -0.50 -12.77 11.57 -68.14 -0.79 -13.56 16 22 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 23 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 24 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 25 H 0.04 1.93 8.10 -2.39 -0.02 1.91 16 26 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 27 H 0.12 3.22 8.07 -2.39 -0.02 3.20 16 28 H 0.11 3.20 8.09 -2.39 -0.02 3.18 16 29 H 0.16 2.43 7.03 -2.91 -0.02 2.41 16 30 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 31 H 0.42 0.43 9.06 -74.06 -0.67 -0.24 16 32 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.41 7.19 9.06 -74.06 -0.67 6.52 16 Total: -1.00 -76.68 293.86 2.52 -74.16 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -0.20 Total: 4.90 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 2.14 Total: -31.07 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.28 Total: -56.13 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -1.74 Total: -39.13 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -76.68 2.52 -74.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001736279.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.396 kcal (2) G-P(sol) polarization free energy of solvation -76.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds